DC900295

Overview
NameDC900295
Unique NameDC900295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1923 contig Csv1_Contig1923:144..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXLA2_ARATH (Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13
Identity = 62/228 (27.19%), Postives = 110/228 (48.25%), Query Frame = 3
Query:   24 SAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-YRAGIVPVSYRRVPC---RKKGGIRF--TINGFRYFNLVLVTNVAGAGDILRVNV-KGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKAS---DRRSSTSWNIVPANWQFGQTF 677
            S+ A ++  S AS    GAC YG++ +  +  + AA   +++ +G  CGACF+++C N P  C S   +++VT  N       + S         R    +A P+     +  + GIV + YRRVPC    KK  +R   +     Y  + L+    G  +++ + + +   + W  M+R+ G  W ++ V  G +L FR   +   D +   S  ++PANW+ G+++
Sbjct:   28 SSKAAYF--SSASALSSGACAYGSMATGFFAGHIAAALPSIYKDGSGCGACFQVRCKN-PTLCSSKGTTVIVTDLNKTNQTDLVLSS--------RAFRAMAKPVVGADRDLLKQGIVDIEYRRVPCDYGNKKMNVRVEESSKNPNYLAIKLLYQ-GGQTEVVAIYIAQVGSSHWSYMTRSHGAVWVTDKVPNG-ALQFRFVVTAGYDGKMVWSQRVLPANWEAGKSY 242          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXLA3_ARATH (Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 60/220 (27.27%), Postives = 103/220 (46.82%), Query Frame = 3
Query:   51 SDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEY--RAGIVPVSYRRVPC---RKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTG---WMSMSRNWGQNWQSNAVLVGQSLSFRVKAS---DRRSSTSWNIVPANWQFGQTF 677
            S AS    GAC YG + +  +  + AA   +++ +G  CGACF+++C N P  C+S    ++VT  N         S+        R    +A P+ + + +Y  + GIV V Y+RVPC   ++   +R      +  N + +  +   G    V +  +  G   W  MSR+ G  W ++ V  G +L F+   +   D ++  S  ++PANW  G+ +
Sbjct:   34 SSASALSSGACAYGPMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKN-PKLCNSKGTIVMVTDLN--------TSNQTDLVLSSRAFRAMAKPV-VGVDKYLLKQGIVDVEYQRVPCNYGKRNLNVRVE-EASKKPNYLAIKLLYQGGQTEVVGIDIAPVGSSQWSYMSRSHGAVWATDKVPTG-ALQFKFTVTGGYDGKTVWSKRVLPANWNSGRIY 241          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXLA1_ARATH (Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 56/220 (25.45%), Postives = 104/220 (47.27%), Query Frame = 3
Query:   51 SDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-YRAGIVPVSYRRVPC---RKKGGIRFTINGFR--YFNLVLVTNVAGAGDILRVNVK--GSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKAS---DRRSSTSWNIVPANWQFGQTF 677
            S AS    GAC YG++ +  +  + AA   +++ +G  CGACF+++C N P  C +    +++T  N         S+        R    +A P+     +  + GIV + Y+RVPC    K   +R      +  Y  + L+    G  +++ +++   GS   W  M+R+ G  W ++ V  G ++ FR   +   D +   S +++P+NW+ G+ +
Sbjct:   34 SSASALSSGACAYGSMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKN-PKLCSTKGTIVMITDLN--------KSNQTDLVLSSRAFRAMAKPIVGADKDLLKQGIVDIEYQRVPCDYGNKNMNVRVEEASKKPNYLEIKLLYQ-GGQTEVVSIDIAQVGSSPNWGYMTRSHGAVWVTDKVPTG-AIQFRFVVTGGYDGKMIWSQSVLPSNWEAGKIY 242          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXLB1_ORYSJ (Expansin-like B1 OS=Oryza sativa subsp. japonica GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 60/227 (26.43%), Postives = 92/227 (40.53%), Query Frame = 3
Query:   27 AHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCR-KKGGIRFTINGFRYFNLVLVTNV---AGAGDILRVNV-KGSRTGWMSMSRNWGQNWQSNAVLVGQ-SLSFRVKASDRRSSTSW----NIVPANWQFGQTF 677
            + A +Y  SD  GT  GAC YG  +         + S +L+ +G+ CGAC++++C N P +C     +I++T +          SD   +         +A       A    G+V + YRRV C      I F I     F   L   +    G  DI+ V + +        +SR  G  W + +   G  S+     +   R   +W    NIVP NW  G T+
Sbjct:   31 SRAAYYPNSDIKGTENGACEYG-AFGATLNNGDVSASASLYRDGVGCGACYQVRCTN-PYYCSPNGVTIVITDSG--------ASDGTDFILSQHAFTRMAQSTDAGTALLTLGVVGIEYRRVSCTYPNKNIVFKITESSNFPNYLEFEIWYQQGNQDIIAVQLCETVNLTCQLLSRTHGAVWAAVSPPSGPLSIRMLFSSGAPRGGDTWLVPTNIVPQNWTAGATY 247          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPL5_DICDI (Expansin-like protein 5 OS=Dictyostelium discoideum GN=expl5 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 60/196 (30.61%), Postives = 90/196 (45.92%), Query Frame = 3
Query:    3 YSGGPWQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVN--TAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVP-VSYRRVPCRKKGGIRFTI--NGFRYFNLVLVTNVAGAGDILRVNVK--GSRTGWMSMSRNWGQNWQSN 569
            YS      A ATFY   D      G CG+G L       N   AAL T L+ NG  CG CF+I         +S + S+ V AT+ C        ++ G+C     HFDL+   F  +     G++  +SY +VPCR  G ++  +      Y+   LV N   A D+ +V++K  GS T ++ +++     W S+
Sbjct:   27 YSKTVINGASATFYSAMD-----NGNCGFGKLTGPTGPGNYMIAALGTKLYQNGAQCGQCFKIS--------NSKNASVTVMATDSC--------NDAGYCQRDN-HFDLSPTAFSILGAQSQGVLDGLSYVKVPCRVSGNVKVMLKDGSNAYWTSFLVFN--NAIDVKQVSIKLSGSST-YVPLTQTTYNYWPSS 197          
The following BLAST results are available for this feature:
BLAST of DC900295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
EXLA2_ARATH1.097e-1327.19Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 ... [more]
EXLA3_ARATH4.168e-1327.27Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 ... [more]
EXLA1_ARATH4.168e-1325.45Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 ... [more]
EXLB1_ORYSJ2.987e-1126.43Expansin-like B1 OS=Oryza sativa subsp. japonica G... [more]
EXPL5_DICDI8.691e-1130.61Expansin-like protein 5 OS=Dictyostelium discoideu... [more]

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Properties
Property NameValue
Genbank descriptionDC900295 VSS Citrus sinensis cDNA clone VS28642 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900295 ID=DC900295; Name=DC900295; organism=Citrus sinensis; type=EST; length=717bp
ATTACTCCGGTGGCCCATGGCAAAGCGCCCATGCCACCTTTTACGGCGGC
TCTGACGCCTCCGGCACCATGGAAGGAGCGTGCGGTTACGGTAACTTGTA
CAGCCAGGGCTACGGCGTGAATACGGCGGCGCTGAGCACGGCGCTGTTCA
ACAATGGCTTGAGCTGCGGTGCTTGCTTTGAGATCAAGTGTGCAAACGAA
CCCGCGTGGTGTCACTCCGGGAGCCCTTCCATTTTGGTTACCGCTACAAA
CTTTTGCCCGCCCAATTACGCACTCCCAAGTGACAATGGCGGCTGGTGTA
ACCCTCCTCGCCCTCATTTTGACCTCGCCATGCCCATGTTCCTCAAGATT
GCTGAGTACCGCGCCGGCATCGTCCCCGTCTCCTACCGCCGGGTACCATG
CCGCAAGAAGGGAGGAATCAGGTTCACAATAAACGGGTTCCGCTACTTCA
ACTTGGTTCTGGTCACCAACGTGGCGGGTGCAGGGGATATCCTGAGGGTG
AACGTGAAAGGGTCAAGAACTGGCTGGATGAGCATGAGCCGTAACTGGGG
CCAAAACTGGCAGTCTAACGCAGTGCTGGTAGGGCAGTCACTTTCGTTTA
GGGTGAAAGCCAGTGACCGACGCAGCTCCACCTCGTGGAACATTGTGCCA
GCTAACTGGCAGTTTGGTCAAACATTCGTTGGAAAGAATTTCAGAGTCTA
AGTTAACGGAGGAGTTT
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