DC900162

Overview
NameDC900162
Unique NameDC900162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7623 contig Csv1_Contig7623:481..1124. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C76_ARATH (Probable protein phosphatase 2C 76 OS=Arabidopsis thaliana GN=At5g53140 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.938e-25
Identity = 54/86 (62.79%), Postives = 71/86 (82.56%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRF 259
            A+SRAFG+R+LKQ+VVA+PEIQ+  ID   E L+LASDGLWDVV NE+AVA+ +  ++PE AA++L   A+ RGSADNITC+VV+F
Sbjct:  262 AMSRAFGNRMLKQFVVAEPEIQDLEIDHEAELLVLASDGLWDVVPNEDAVALAQSEEEPEAAARKLTDTAFSRGSADNITCIVVKF 347          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C56_ORYSJ (Probable protein phosphatase 2C 56 OS=Oryza sativa subsp. japonica GN=Os06g0526800/Os06g0526950 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.829e-22
Identity = 49/86 (56.98%), Postives = 70/86 (81.40%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRF 259
            A+SRAFG+R LK YV A+P+IQE+V+D SLE+LILA+DGLWDV+ NE+AV+++K    P+ AA +L + A+ R + DNITC+V++F
Sbjct:  258 AMSRAFGNRALKHYVKAEPDIQEKVVDESLEYLILATDGLWDVMRNEDAVSLLKAQDGPKAAAMKLTEVAHSRLTLDNITCIVLQF 343          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C55_ORYSJ (Probable protein phosphatase 2C 55 OS=Oryza sativa subsp. japonica GN=Os06g0526700 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 6.951e-22
Identity = 47/86 (54.65%), Postives = 69/86 (80.23%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRF 259
            AVSRAFG+RL+K+YV A+P IQE+V+D  LE+L+LA+DGLWDV+ NE+AV+++K    P+ AA +L + A  R + DN+TC+V++F
Sbjct:  284 AVSRAFGNRLMKRYVKAEPNIQEKVVDEGLEYLVLATDGLWDVMRNEDAVSLLKAQDGPKAAAMKLTEVARSRLTLDNVTCIVLQF 369          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C44_ORYSJ (Probable protein phosphatase 2C 44 OS=Oryza sativa subsp. japonica GN=Os04g0609600 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.505e-21
Identity = 47/86 (54.65%), Postives = 69/86 (80.23%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRF 259
            AV+RAFGD+ LK ++ ++P+++   I+SS+EF+ILASDGLW V+ N+EAV ++K I+DP+ AAKRL  EA  R S D+I+C+V+RF
Sbjct:  234 AVARAFGDQSLKAHLSSEPDVRHVPINSSIEFVILASDGLWKVMKNQEAVDLVKSIKDPQAAAKRLTTEALARKSKDDISCIVIRF 319          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C62_ORYSJ (Probable protein phosphatase 2C 62 OS=Oryza sativa subsp. japonica GN=Os07g0507000 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.712e-20
Identity = 47/87 (54.02%), Postives = 68/87 (78.16%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFL 262
            AV+RAFGDR LK+++ ++P++ EE ID + +FLILASDGLW V++N+EAV  IK  +D + AAK L ++A  R S D+I+C+VV+FL
Sbjct:  203 AVARAFGDRSLKKHLSSEPDVVEEPIDENTDFLILASDGLWKVMSNQEAVDEIKDFKDAQAAAKHLTEQAVNRKSKDDISCIVVKFL 289          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C09_ARATH (Probable protein phosphatase 2C 9 OS=Arabidopsis thaliana GN=At1g22280 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.712e-20
Identity = 46/86 (53.49%), Postives = 68/86 (79.07%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRF 259
            AVSRAFGD+ LK ++ ++P+I+E  +DS  + L+LASDG+W V+TNEEA+ + + ++DP++AAK L  EA +R S D+I+CVVVRF
Sbjct:  195 AVSRAFGDKGLKTHLSSEPDIKEATVDSQTDVLLLASDGIWKVMTNEEAMEIARRVKDPQKAAKELTAEALRRESKDDISCVVVRF 280          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C20_ARATH (Probable protein phosphatase 2C 20 OS=Arabidopsis thaliana GN=PPC3-1.2 PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 4.981e-20
Identity = 45/90 (50.00%), Postives = 69/90 (76.67%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQ 271
            AV+RAFGD+ LK ++ +DP+I++E ID   EF++ ASDG+W V++N+EAV +IK I+DP+ AAK L++EA  + S D+I+C+V  FL  +
Sbjct:  193 AVARAFGDKSLKIHLSSDPDIRDENIDHETEFILFASDGVWKVMSNQEAVDLIKSIKDPQAAAKELIEEAVSKQSTDDISCIVPCFLRRE 282          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C17_ARATH (Probable protein phosphatase 2C 17 OS=Arabidopsis thaliana GN=At1g78200 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.497e-20
Identity = 46/86 (53.49%), Postives = 69/86 (80.23%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRF 259
            AVSR FGD+ LK Y+ ++PEI++  IDS  +FLILASDG+  V++N+EAV + K ++DP+EAA++++ EA +R S D+I+C+VVRF
Sbjct:  197 AVSRVFGDKNLKAYLNSEPEIKDVTIDSHTDFLILASDGISKVMSNQEAVDVAKKLKDPKEAARQVVAEALKRNSKDDISCIVVRF 282          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C58_ARATH (Probable protein phosphatase 2C 58 OS=Arabidopsis thaliana GN=At4g28400 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.110e-19
Identity = 44/86 (51.16%), Postives = 65/86 (75.58%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRF 259
            AV+RAFGD+ LK ++ ++P+I  + ID   EF++ ASDG+W V++N+EAV  IK I+DP  AAK L++EA  R S D+I+C+VV+F
Sbjct:  197 AVARAFGDKSLKLHLSSEPDITHQTIDDHTEFILFASDGIWKVLSNQEAVDAIKSIKDPHAAAKHLIEEAISRKSKDDISCIVVKF 282          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C41_ORYSJ (Probable protein phosphatase 2C 41 OS=Oryza sativa subsp. japonica GN=Os04g0451900/Os04g0452000 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.893e-19
Identity = 48/86 (55.81%), Postives = 64/86 (74.42%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRF 259
            AVSRAFGDR LK  + ++P+I+ E ID + E L+LASDGLW V+ N+E V + K  +DP+ AAK+L  EA +R S D+I+CVVVRF
Sbjct:  197 AVSRAFGDRNLKSLLKSEPDIKVEDIDYTAELLVLASDGLWKVMNNQEVVDVAKRFKDPQAAAKQLTAEALKRDSKDDISCVVVRF 282          
The following BLAST results are available for this feature:
BLAST of DC900162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
P2C76_ARATH3.938e-2562.79Probable protein phosphatase 2C 76 OS=Arabidopsis ... [more]
P2C56_ORYSJ1.829e-2256.98Probable protein phosphatase 2C 56 OS=Oryza sativa... [more]
P2C55_ORYSJ6.951e-2254.65Probable protein phosphatase 2C 55 OS=Oryza sativa... [more]
P2C44_ORYSJ4.505e-2154.65Probable protein phosphatase 2C 44 OS=Oryza sativa... [more]
P2C62_ORYSJ1.712e-2054.02Probable protein phosphatase 2C 62 OS=Oryza sativa... [more]
P2C09_ARATH1.712e-2053.49Probable protein phosphatase 2C 9 OS=Arabidopsis t... [more]
P2C20_ARATH4.981e-2050.00Probable protein phosphatase 2C 20 OS=Arabidopsis ... [more]
P2C17_ARATH8.497e-2053.49Probable protein phosphatase 2C 17 OS=Arabidopsis ... [more]
P2C58_ARATH1.110e-1951.16Probable protein phosphatase 2C 58 OS=Arabidopsis ... [more]
P2C41_ORYSJ1.893e-1955.81Probable protein phosphatase 2C 41 OS=Oryza sativa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900162 VSS Citrus sinensis cDNA clone VS27V81 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900162 ID=DC900162; Name=DC900162; organism=Citrus sinensis; type=EST; length=644bp
TGCCGTTTCTCGCGCATTTGGTGACAGACTCTTGAAGCAGTATGTTGTTG
CTGATCCCGAAATTCAGGAGGAAGTTATTGACAGCTCCCTTGAGTTTCTT
ATCCTTGCAAGTGATGGACTTTGGGATGTCGTCACAAATGAGGAAGCTGT
TGCGATGATCAAACCAATCCAGGATCCAGAGGAGGCAGCGAAGAGGCTGA
TGCAGGAGGCATATCAGAGAGGCAGCGCAGACAACATCACCTGTGTCGTT
GTTCGGTTCTTGGCCAATCAAGGTGGTTCATCCTTTCCTGGCTCTGCATG
AACATCCTTTCATAGCCACCGCTCTGCTTTTGTTCTCTACATGGGCATCC
TTTCAGTGGTCTACAGCTAGTAGTCATAGAAAAATTACAGTTTCGTTGTA
CTTTGTAATGATAGAACATGAACAAAAAGCTTACCCCGGCCGTTAATGTG
TATTACGTATTATCAGTCTCTGGAATAGATGTGTCCGAAGTTTAACATCT
GTTCTCGGTCCTCGAAATGTAGCTAGAAATGTGTATGTATGCATGTGTAA
AGAATTGGCAAAGACTTCTAAAGTTTCAATTTCCTATGTTGTAAATGTAG
ATGAAACTCTTCTGTTGCTCATAGTTTAATATGCGTTTTCATTT
back to top