DC900162

Overview
NameDC900162
Unique NameDC900162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7623 contig Csv1_Contig7623:481..1124. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C25_ARATH (Probable protein phosphatase 2C 25 OS=Arabidopsis thaliana GN=At2g30020 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.314e-12
Identity = 40/90 (44.44%), Postives = 60/90 (66.67%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEE------AAKRLMQEAYQRGSADNITCVVV 253
            AVSR  GD  LK++V+A+PE +   I+   EFLILASDGLWD V+N+EAV + +P+    E      A K+L+  +  RGS+D+I+ +++
Sbjct:  301 AVSRGIGDAQLKKWVIAEPETKISRIEHDHEFLILASDGLWDKVSNQEAVDIARPLCLGTEKPLLLAACKKLVDLSASRGSSDDISVMLI 390          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C74_ORYSJ (Probable protein phosphatase 2C 74 OS=Oryza sativa subsp. japonica GN=Os11g0242200 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.241e-12
Identity = 40/91 (43.96%), Postives = 62/91 (68.13%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQYVVADPEIQEEVI-DSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVV---RFL 262
            AV+R+FGD  LK++VVA+PE+    +  +  EFL++ASDGLW+ V+N+EAV  +       ++ +RL+  A +RGS D++T +VV   RFL
Sbjct:  305 AVTRSFGDGGLKRWVVAEPEVSRTPLAGAGCEFLVIASDGLWNKVSNQEAVDAVAAGHYSVDSCRRLVDMARRRGSRDDVTVMVVDLKRFL 395          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C73_ARATH (Probable protein phosphatase 2C 73 OS=Arabidopsis thaliana GN=PPC6-7 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.241e-12
Identity = 40/101 (39.60%), Postives = 65/101 (64.36%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQY-VVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAY------QRGSADNITCVVVRFLANQGGSS 283
            A+SRAFGD  +K+Y +V+ PE+ +  I +   F+ILASDG+WDV++N+EA+ ++    +  +AAKRL+++A       +RG + +   VV  FL +   SS
Sbjct:  261 AMSRAFGDYCIKEYGLVSVPEVTQRHISTKDHFIILASDGIWDVISNQEAIEIVSSTAERPKAAKRLVEQAVRAWKKKRRGYSMDDMSVVCLFLHSSSSSS 361          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: PPM1L_MOUSE (Protein phosphatase 1L OS=Mus musculus GN=Ppm1l PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.927e-12
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQY--VVADPEIQEEVIDS-SLEFLILASDGLWDVVTNEEAVAMIKP-IQDPEEAAKRLMQEAYQRGSADNITCVVVRF 259
            A+SR+ GD  LK    V+ DP+I    +D    EF+ILASDGLWD  +NEEAV  IK  + +P   AK ++ +++ RG  DNIT +VV+F
Sbjct:  262 AMSRSLGDYPLKNLNVVIPDPDILTFDLDKLQPEFMILASDGLWDAFSNEEAVRFIKERLDEPHFGAKSIVLQSFYRGCPDNITVMVVKF 351          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: PPM1L_HUMAN (Protein phosphatase 1L OS=Homo sapiens GN=PPM1L PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.927e-12
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQY--VVADPEIQEEVIDS-SLEFLILASDGLWDVVTNEEAVAMIKP-IQDPEEAAKRLMQEAYQRGSADNITCVVVRF 259
            A+SR+ GD  LK    V+ DP+I    +D    EF+ILASDGLWD  +NEEAV  IK  + +P   AK ++ +++ RG  DNIT +VV+F
Sbjct:  262 AMSRSLGDYPLKNLNVVIPDPDILTFDLDKLQPEFMILASDGLWDAFSNEEAVRFIKERLDEPHFGAKSIVLQSFYRGCPDNITVMVVKF 351          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: PPM1L_BOVIN (Protein phosphatase 1L OS=Bos taurus GN=PPM1L PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.927e-12
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQY--VVADPEIQEEVIDS-SLEFLILASDGLWDVVTNEEAVAMIKP-IQDPEEAAKRLMQEAYQRGSADNITCVVVRF 259
            A+SR+ GD  LK    V+ DP+I    +D    EF+ILASDGLWD  +NEEAV  IK  + +P   AK ++ +++ RG  DNIT +VV+F
Sbjct:  262 AMSRSLGDYPLKNLNVVIPDPDILTFDLDKLQPEFMILASDGLWDAFSNEEAVRFIKDRLDEPHFGAKSIVLQSFYRGCPDNITVMVVKF 351          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C41_ARATH (Probable protein phosphatase 2C 41 OS=Arabidopsis thaliana GN=At3g16800 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.521e-12
Identity = 34/71 (47.89%), Postives = 53/71 (74.65%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQY-VVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEA 211
            AVSRAFGD  LK + +V++PE+    I    +FLILA+DG+WDV+TN EAV +++ +++  ++AKRL++ A
Sbjct:  255 AVSRAFGDYCLKDFGLVSEPEVTYRKITDKDQFLILATDGMWDVMTNNEAVEIVRGVKERRKSAKRLVERA 325          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C49_ARATH (Probable protein phosphatase 2C 49 OS=Arabidopsis thaliana GN=At3g62260 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.453e-11
Identity = 39/102 (38.24%), Postives = 61/102 (59.80%), Query Frame = 2
Query:    2 AVSRAFGDRLLK------QYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIK----PIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGG 277
            AV+RA GD  LK        ++++PEI++  +    EFL++  DG+WDV+T++EAV++++       DP   A+ L+ EA  R S DN+T VVV F+    G
Sbjct:  254 AVTRALGDWDLKLPHGSQSPLISEPEIKQITLTEDDEFLVIGCDGIWDVLTSQEAVSIVRRGLNRHNDPTRCARELVMEALGRNSFDNLTAVVVCFMTMDRG 355          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C34_ARATH (Probable protein phosphatase 2C 34 OS=Arabidopsis thaliana GN=At3g05640 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.478e-11
Identity = 40/102 (39.22%), Postives = 66/102 (64.71%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQY-VVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAY------QRGSA-DNITCVVVRFLANQGGSS 283
            A+SRAFGD  +K Y +V+ PE+ +  I    +F+ILA+DG+WDV++N+EA+ ++    +  +AAKRL+Q+A       +RG A D+I+ V + F ++    S
Sbjct:  256 AMSRAFGDYCIKDYGLVSVPEVTQRHISIRDQFIILATDGVWDVISNQEAIDIVSSTAERAKAAKRLVQQAVRAWNRKRRGIAMDDISAVCLFFHSSSSSPS 357          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C48_ORYSJ (Probable protein phosphatase 2C 48 OS=Oryza sativa subsp. japonica GN=Os05g0358500 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.227e-11
Identity = 35/71 (49.30%), Postives = 51/71 (71.83%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQY-VVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEA 211
            A+SRAFGD  +K Y V++ PE+    I +   F+ILA+DG+WDVV+NEEAV ++    + E+AAKRL++ A
Sbjct:  255 AMSRAFGDYCVKDYGVISAPEVTHRRITAQDHFVILATDGVWDVVSNEEAVQIVASAPEREKAAKRLVEFA 325          
The following BLAST results are available for this feature:
BLAST of DC900162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
P2C25_ARATH1.314e-1244.44Probable protein phosphatase 2C 25 OS=Arabidopsis ... [more]
P2C74_ORYSJ2.241e-1243.96Probable protein phosphatase 2C 74 OS=Oryza sativa... [more]
P2C73_ARATH2.241e-1239.60Probable protein phosphatase 2C 73 OS=Arabidopsis ... [more]
PPM1L_MOUSE2.927e-1246.67Protein phosphatase 1L OS=Mus musculus GN=Ppm1l PE... [more]
PPM1L_HUMAN2.927e-1246.67Protein phosphatase 1L OS=Homo sapiens GN=PPM1L PE... [more]
PPM1L_BOVIN2.927e-1246.67Protein phosphatase 1L OS=Bos taurus GN=PPM1L PE=2... [more]
P2C41_ARATH6.521e-1247.89Probable protein phosphatase 2C 41 OS=Arabidopsis ... [more]
P2C49_ARATH1.453e-1138.24Probable protein phosphatase 2C 49 OS=Arabidopsis ... [more]
P2C34_ARATH2.478e-1139.22Probable protein phosphatase 2C 34 OS=Arabidopsis ... [more]
P2C48_ORYSJ4.227e-1149.30Probable protein phosphatase 2C 48 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionDC900162 VSS Citrus sinensis cDNA clone VS27V81 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900162 ID=DC900162; Name=DC900162; organism=Citrus sinensis; type=EST; length=644bp
TGCCGTTTCTCGCGCATTTGGTGACAGACTCTTGAAGCAGTATGTTGTTG
CTGATCCCGAAATTCAGGAGGAAGTTATTGACAGCTCCCTTGAGTTTCTT
ATCCTTGCAAGTGATGGACTTTGGGATGTCGTCACAAATGAGGAAGCTGT
TGCGATGATCAAACCAATCCAGGATCCAGAGGAGGCAGCGAAGAGGCTGA
TGCAGGAGGCATATCAGAGAGGCAGCGCAGACAACATCACCTGTGTCGTT
GTTCGGTTCTTGGCCAATCAAGGTGGTTCATCCTTTCCTGGCTCTGCATG
AACATCCTTTCATAGCCACCGCTCTGCTTTTGTTCTCTACATGGGCATCC
TTTCAGTGGTCTACAGCTAGTAGTCATAGAAAAATTACAGTTTCGTTGTA
CTTTGTAATGATAGAACATGAACAAAAAGCTTACCCCGGCCGTTAATGTG
TATTACGTATTATCAGTCTCTGGAATAGATGTGTCCGAAGTTTAACATCT
GTTCTCGGTCCTCGAAATGTAGCTAGAAATGTGTATGTATGCATGTGTAA
AGAATTGGCAAAGACTTCTAAAGTTTCAATTTCCTATGTTGTAAATGTAG
ATGAAACTCTTCTGTTGCTCATAGTTTAATATGCGTTTTCATTT
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