DC900162

Overview
NameDC900162
Unique NameDC900162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C47_ORYSJ (Probable protein phosphatase 2C 47 OS=Oryza sativa subsp. japonica GN=Os05g0134200 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.227e-11
Identity = 36/101 (35.64%), Postives = 63/101 (62.38%), Query Frame = 2 
Query:    2 AVSRAFGDRLLKQY------VVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMI----KPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQG 274
            +V+RA GD  +K        ++A+PE ++ ++    EFLI+  DG+WDV+T++ AV+++    +   DPE  A+ L+ EA +  +ADN+T +VV F++  G
Sbjct:  251 SVTRALGDWDMKMPDGSISPLIAEPEFRQTMLTEDDEFLIMGCDGIWDVMTSQHAVSIVRRGLRQHDDPERCARELVMEAKRLETADNLTVIVVCFVSELG 351
[Close]
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C44_ARATH (Putative protein phosphatase 2C-like protein 44 OS=Arabidopsis thaliana GN=At3g23360 PE=5 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.227e-11
Identity = 31/63 (49.21%), Postives = 48/63 (76.19%), Query Frame = 2 
Query:   71 EVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRF 259
            E I+S  EF+I+ S G+W+V+ ++EA+ +I+ I+DP+EAAK L +EA  R S  +I+CVV+RF
Sbjct:  197 EKINSDTEFIIIGSPGIWEVMKSQEAINLIRHIEDPKEAAKCLAKEALNRISKSSISCVVIRF 259
The following BLAST results are available for this feature:
BLAST of DC900162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
P2C47_ORYSJ4.227e-1135.64Probable protein phosphatase 2C 47 OS=Oryza sativa... [more]
P2C44_ARATH4.227e-1149.21Putative protein phosphatase 2C-like protein 44 OS... [more]

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Properties
Property NameValue
Genbank descriptionDC900162 VSS Citrus sinensis cDNA clone VS27V81 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900162 ID=DC900162; Name=DC900162; organism=Citrus sinensis; type=EST; length=644bp
TGCCGTTTCTCGCGCATTTGGTGACAGACTCTTGAAGCAGTATGTTGTTG
CTGATCCCGAAATTCAGGAGGAAGTTATTGACAGCTCCCTTGAGTTTCTT
ATCCTTGCAAGTGATGGACTTTGGGATGTCGTCACAAATGAGGAAGCTGT
TGCGATGATCAAACCAATCCAGGATCCAGAGGAGGCAGCGAAGAGGCTGA
TGCAGGAGGCATATCAGAGAGGCAGCGCAGACAACATCACCTGTGTCGTT
GTTCGGTTCTTGGCCAATCAAGGTGGTTCATCCTTTCCTGGCTCTGCATG
AACATCCTTTCATAGCCACCGCTCTGCTTTTGTTCTCTACATGGGCATCC
TTTCAGTGGTCTACAGCTAGTAGTCATAGAAAAATTACAGTTTCGTTGTA
CTTTGTAATGATAGAACATGAACAAAAAGCTTACCCCGGCCGTTAATGTG
TATTACGTATTATCAGTCTCTGGAATAGATGTGTCCGAAGTTTAACATCT
GTTCTCGGTCCTCGAAATGTAGCTAGAAATGTGTATGTATGCATGTGTAA
AGAATTGGCAAAGACTTCTAAAGTTTCAATTTCCTATGTTGTAAATGTAG
ATGAAACTCTTCTGTTGCTCATAGTTTAATATGCGTTTTCATTT
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