CN185887

Overview
NameCN185887
Unique NameCN185887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2452 contig Csv1_Contig2452:148..949. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.614e-19
Identity = 62/170 (36.47%), Postives = 94/170 (55.29%), Query Frame = -2
Query:  330 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEG-DKSQDEIDFEFLG---KDKTIVQTNYYTTGT--GNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNE--GEGFPNKPMFLYASVWDASHIDKARWC--GPYVGCD---APYVCLYKDI 800
            G+ + S   +L+G FS+ I+ P   T+G+    Y+S+ +  +K+ DEIDFEFLG   + +  VQTN Y  G+    REE ++L FD +E FH+Y I W    I + +D   +R  +R    G  FP+KPM LY ++WD S     +W   G   G +   APY+  + D+
Sbjct:   62 GSGFVSNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVKRTAEMGGHFPSKPMSLYTTIWDGS-----KWATNGGKYGVNYKYAPYIARFSDL 226          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH19_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 19 OS=Arabidopsis thaliana GN=XTH19 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.614e-19
Identity = 63/187 (33.69%), Postives = 90/187 (48.13%), Query Frame = -2
Query:  288 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFP---NKPMFLYASVWDASH------IDKARWCGPYVGCDAPYVCLYKDIHVPVATAVE----CPCDS 800
            G+ ++S   FLYG     ++   GN++G     YL S     + DEIDFEFLG        + TN YT G+G++E+   L FD +  FH Y I W P  I + +DG  +R     E  G P    +PM LYAS+W+A H      ++K  W        AP+   Y++ +V     V     CP +S
Sbjct:   56 GSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKS--PGTTWDEIDFEFLGNISGHPYTLHTNVYTKGSGDKEQQFHLWFDPTANFHTYCITWNPQRIIFTVDGIPIREFMNAESRGVPFPTKQPMRLYASLWEAEHWATRGGLEKTDW------SKAPFTAYYRNYNVEGCVWVNGKSVCPANS 234          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH18_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 18 OS=Arabidopsis thaliana GN=XTH18 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.614e-19
Identity = 59/171 (34.50%), Postives = 87/171 (50.88%), Query Frame = -2
Query:  324 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFP---NKPMFLYASVWDASH------IDKARWCGPYVGCDAPYVCLYKDIHV 800
            G+ ++S   FLYG     ++   GN++G     YL S     + DEIDFEFLG        + TN YT G+G++E+   L FD +  FH Y I W P  I + +DG  +R  + +E  G P    +PM LYAS+W+A H      ++K  W        AP+   Y++ +V
Sbjct:   61 GSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKS--PGTTWDEIDFEFLGNLSGHPYTLHTNVYTKGSGDKEQQFHLWFDPTVNFHTYCITWNPQRIIFTVDGIPIREFKNSESIGVPFPTKQPMRLYASLWEAEHWATRGGLEKTDW------SKAPFTAFYRNYNV 223          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XYND_RUMFL (Xylanase/beta-glucanase OS=Ruminococcus flavefaciens GN=xynD PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.794e-18
Identity = 49/135 (36.30%), Postives = 70/135 (51.85%), Query Frame = -2
Query:  396 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHID 800
            G  +R+   + YG +   +Q  K +    +F  Y    + D   DEID E LGK+ T VQ NYYT G G  E+++DLGFD SE +H Y   W P+ I W +DG+ V RA ++     P  P  +  + W    +D
Sbjct:  636 GGEFRTNNFYHYGYYECSMQAMKNDGVVSSFFTYTGPSD-DNPWDEIDIEILGKNTTQVQFNYYTNGQGKHEKLYDLGFDSSEAYHTYGFDWQPNYIAWYVDGREVYRATQD----IPKTPGKIMMNAWPGLTVD 765          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: GUB_BACLI (Beta-glucanase OS=Bacillus licheniformis GN=bg1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.794e-18
Identity = 51/141 (36.17%), Postives = 73/141 (51.77%), Query Frame = -2
Query:  366 RSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVG 788
            RS   + YG +   ++  K      +F  Y    +G    DEID EFLGKD T VQ NYYT G GN E+I +LGFD +  +H Y   W P+ I+W +DG++   A        P  P  +  ++W+ + +D+  W G Y G
Sbjct:   94 RSVQTYGYGLYEVNMKPAKNVGIVSSFFTYTGPTDGTP-WDEIDIEFLGKDTTKVQFNYYTNGVGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDGQLKHTATTQ----IPQTPGKIMMNLWNGAGVDE--WLGSYNG 227          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 61/186 (32.80%), Postives = 93/186 (50.00%), Query Frame = -2
Query:  288 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPN---KPMFLYASVWDASH------IDKARWCGPYVGCDAPYVCLYKDIHV---PVATAVECPCDS 800
            G  + S  ++L+G  S  I+   G+++G     Y++S + D  +DE+DFEFLG        VQTN +  G G+RE+  +L FD S  FHEY I W    I + +D   +R  + NE    P    +PM +Y+++W+A        I+K  W        AP+   YKD  +   PV    +CP +S
Sbjct:   65 GCGFASKKQYLFGRVSMKIKLIPGDSAGTVTAFYMNS-DTDSVRDELDFEFLGNRSGQPYTVQTNVFAHGKGDREQRVNLWFDPSRDFHEYAISWNHLRIVFYVDNVPIRVYKNNEARKVPYPRFQPMGVYSTLWEADDWATRGGIEKINW------SRAPFYAYYKDFDIEGCPVPGPADCPANS 243          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH24_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 64/168 (38.10%), Postives = 89/168 (52.98%), Query Frame = -2
Query:  324 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEG--FP-NKPMFLYASVWDASHIDKARWCGPYVGCD---APYVCLYKDIHV 800
            G+ ++S T +L+G     I+   GN++G     YL S EG  + DEIDFEFLG    D   + TN YT G G++E+   L FD +  FH Y I W P  I   +D   +R  +  E  G  FP NKPM +YAS+W+A   D     G  V  D   AP++  Y++I +
Sbjct:   55 GSGFQSKTEYLFGKIDMQIKLVPGNSAGTVTTFYLKS-EGS-TWDEIDFEFLGNMSGDPYTLHTNVYTQGKGDKEQQFHLWFDPTANFHTYSILWNPQRIILTVDDTPIREFKNYESLGVLFPKNKPMRMYASLWNA---DDWATRGGLVKTDWSKAPFMASYRNIKI 217          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: GUB_CLOTH (Beta-glucanase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=licB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 53/142 (37.32%), Postives = 74/142 (52.11%), Query Frame = -2
Query:  366 WRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVG 791
            +R+ + F YG +   ++  K      +F  Y    + +   DEID EFLGKD T VQ N+Y  G G  E +H+LGFD S+ FH Y  +W PD I + +DGK V R  RN     P  P  +  ++W    +D+  W G Y G
Sbjct:   95 YRTKSFFGYGYYEVRMKAAKNVGIVSSFFTYTGPSDNNP-WDEIDIEFLGKDTTKVQFNWYKNGVGGNEYLHNLGFDASQDFHTYGFEWRPDYIDFYVDGKKVYRGTRN----IPVTPGKIMMNLWPGIGVDE--WLGRYDG 229          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.059e-18
Identity = 63/170 (37.06%), Postives = 94/170 (55.29%), Query Frame = -2
Query:  330 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLE-GDKSQDEIDFEFLGKDKTI---VQTNYYTTGTGN--REEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEG--FPNKPMFLYASVWDASHIDKARWC--GPYVGCD---APYVCLYKDI 800
            G+ + S   +L+G FSS I+ P   ++G+    YLS+ +  +K+ DEIDFEFLG  +     +QTN Y  G+ +  REE ++L FD +E FH+Y I W    I + +D   +R  +R    G  FP KPM LY+++WD S     +W   G   G +   APYV  + D+
Sbjct:   62 GSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPAKPMSLYSTIWDGS-----KWATDGGKYGVNYKYAPYVSQFTDL 226          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: GUB_BREBE (Beta-glucanase OS=Brevibacillus brevis GN=bglBB PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.059e-18
Identity = 52/151 (34.44%), Postives = 73/151 (48.34%), Query Frame = -2
Query:  339 RSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQ-DEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAPYVCLY 788
            R+   + YG F   ++  K   +  +F  Y    + D    DEID EFLGKD T +Q NY+T G G  E  +DLGFD SE F+ Y  +W  D I W ++G+ V  A  N     P  P  +  ++W    +D   W G + G + P    Y
Sbjct:  100 RTNDFYHYGLFEVSMKPAKVEGTVSSFFTYTGEWDWDGDPWDEIDIEFLGKDTTRIQFNYFTNGVGGNEFYYDLGFDASESFNTYAFEWREDSITWYVNGEAVHTATEN----IPQTPQKIMMNLWPGVGVD--GWTGVFDGDNTPVYSYY 244          
The following BLAST results are available for this feature:
BLAST of CN185887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
XTH27_ARATH3.614e-1936.47Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH19_ARATH3.614e-1933.69Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH18_ARATH3.614e-1934.50Probable xyloglucan endotransglucosylase/hydrolase... [more]
XYND_RUMFL1.794e-1836.30Xylanase/beta-glucanase OS=Ruminococcus flavefacie... [more]
GUB_BACLI1.794e-1836.17Beta-glucanase OS=Bacillus licheniformis GN=bg1 PE... [more]
XTH7_ARATH2.343e-1832.80Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH24_ARATH2.343e-1838.10Xyloglucan endotransglucosylase/hydrolase protein ... [more]
GUB_CLOTH2.343e-1837.32Beta-glucanase OS=Clostridium thermocellum (strain... [more]
XTH28_ARATH3.059e-1837.06Probable xyloglucan endotransglucosylase/hydrolase... [more]
GUB_BREBE3.059e-1834.44Beta-glucanase OS=Brevibacillus brevis GN=bglBB PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185887 ID=CN185887; Name=CN185887; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTCGAATCACAGTTCCATCTTATTGCTTAGATATTTCAAGAAAGC
CGTCTAGAGCAAGCATACAGAAGAAGCCTGAGACAGTGACATCCCTAAAC
AAGAAAGCAAATCAGATTACACCATTCAAAAATTTATTACAACAGACTGA
AATTGCTAAGATACAATTGGTAGGAACAGCAACCAACCACCACACAGTGA
AATCCGATTGATGAAAAGACATTGTAAATGGAAGAACAAAATCCCAAGAA
ACATCAGAACAACTCAAATACGCCACTCACCAAATCAAGAATCACAAGGG
CACTCCACCGCAGTGGCAACAGGCACATGAATGTCTTTGTAGAGGCAAAC
ATAAGGTGCATCACAGCCCACGTAGGGCCCACACCACCTGGCCTTATCAA
TGTGGCTAGCATCCCAAACTGAAGCATACAAAAACATTGGTTTATTGGGA
AACCCCTCACCCTCGTTCCTCTCAGCTCTCCTCACCACCTTCCCATCAAT
CAACCACTGGATCAAATCTGGACCCCACTTGATCACGTACTCATGAAATC
CTTCAGAACAATCGAACCCCAGATCATGAATCTCCTCTCTATTCCCGGTT
CCTGTAGTGTAATAATTGGTTTGAACGATAGTCTTGTCCTTGCCAAGGAA
TTCAAAGTCGATTTCGTCTTGGGATTTGTCGCCTTCTAGAGAAGAAAGGT
AGATGTTGAAGTTGAGGCCACTAGTGTTGCCTTTGGGGCACTGGATCAGG
GAGCTGAAGGTGCCGTAAAGGAAGCGAGTGGTGGAGCGCCACCTGGCTCC
G
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