CN185887

Overview
NameCN185887
Unique NameCN185887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2452 contig Csv1_Contig2452:148..949. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.996e-18
Identity = 60/171 (35.09%), Postives = 91/171 (53.22%), Query Frame = -2
Query:  324 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVR--RAERNEGEGFP-NKPMFLYASVWDASH------IDKARWCGPYVGCDAPYVCLYKDIHV 800
            G  ++S   +L+G FS  I+   G+++G     YLSS   +   DEIDFEFLG       I+QTN +T G GNRE+  +L FD S+ +H Y + W    I + +D   +R  +  ++ G  FP N+PM +Y+S+W+A        ++K  W        AP+V  Y+  HV
Sbjct:   63 GTGFQSKGSYLFGHFSMHIKMVAGDSAGTVTAFYLSSQNSE--HDEIDFEFLGNRTGQPYILQTNVFTGGAGNREQRINLWFDPSKDYHSYSVLWNMYQIVFFVDDVPIRVFKNSKDVGVKFPFNQPMKIYSSLWNADDWATRGGLEKTNW------EKAPFVASYRGFHV 225          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.901e-18
Identity = 59/171 (34.50%), Postives = 91/171 (53.22%), Query Frame = -2
Query:  324 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVR--RAERNEGEGFP-NKPMFLYASVWDASH------IDKARWCGPYVGCDAPYVCLYKDIHV 800
            GA ++S   +L+G FS  ++   G+++G+    YLSS   +   DEIDFEFLG       I+QTN +T G G+RE+   L FD ++G+H Y + W    I   +D   +R  +  ++ G  FP N+PM +Y+S+WDA        ++K  W       +AP+   Y   HV
Sbjct:   63 GAGFQSKKSYLFGHFSMKLKLVGGDSAGVVTAFYLSS--NNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKGYHSYSVLWNTFQIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTDW------SNAPFTASYTSFHV 225          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.901e-18
Identity = 67/172 (38.95%), Postives = 90/172 (52.33%), Query Frame = -2
Query:  330 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGD---KSQDEIDFEFLGK---DKTIVQTNYYTTGTGNR--EEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNE--GEGFPNKPMFLYASVWDASHIDKARWC--GPYVGCD---APYVCLYKDI 800
            G+ + S++ + +G FSSLI+ P   T+G+    Y S+  GD   K  DE+D EFLG         QTN Y  G+ NR  EE + L FD S+ FH Y I W P  I + +D   +R   R E     +P KPM LYA++WDAS      W   G   G D   +P+V  +KDI
Sbjct:   71 GSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSN--GDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYPQKPMSLYATIWDAS-----SWATSGGKFGVDYTFSPFVSEFKDI 235          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH26_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.901e-18
Identity = 53/137 (38.69%), Postives = 74/137 (54.01%), Query Frame = -2
Query:  408 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVR--RAERNEGEGFPNKP-MFLYASVWDA 800
            G+  +S    L+G+   LI+   GN++G     YLSS     + DEIDFEFLG        + TN Y  G GNRE+     F+ + GFH Y I W P  + W +DG  +R  R   +EG  +PNK  M ++AS+W+A
Sbjct:   58 GSAIKSKVAHLFGSVEMLIKLVPGNSAGTVAAYYLSST--GSTHDEIDFEFLGNATGQPYTIHTNLYAQGKGNREQQFRPWFNPTNGFHNYTIHWNPSEVVWFVDGTPIRVFRNYESEGIAYPNKQGMKVFASLWNA 192          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: GUB_ORPSP (Beta-glucanase OS=Orpinomyces sp. (strain PC-2) GN=licA PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.901e-18
Identity = 54/142 (38.03%), Postives = 71/142 (50.00%), Query Frame = -2
Query:  366 WRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVG 791
            +R+   + YG F   ++  K      +F  Y    +G K  DEID EFLG D T VQ NYYT G G+ E IH LGFD S+GFH Y   W  + I W +DG  V  A  N     P+ P  +  + W+   +D   W  P+ G
Sbjct:   93 YRTKNYYGYGMFQVNMKPIKNPGVVSSFFTYTGPSDGTK-WDEIDIEFLGYDTTKVQFNYYTNGQGHHEHIHYLGFDASQGFHTYGFFWARNSITWYVDGTAVYTAYDN----IPDTPGKIMMNAWNGIGVDD--WLRPFNG 227          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH8_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.163e-17
Identity = 58/174 (33.33%), Postives = 91/174 (52.30%), Query Frame = -2
Query:  324 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEG-DKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNE----GEGFPN-KPMFLYASVWDASH------IDKARWCGPYVGCDAPYVCLYKDIHV 800
            G  +++   + +G FS  ++   G+++G+    Y+ S  G    +DEIDFEFLG       I+QTN Y  GTGNRE  H L FD ++ +H Y I W    + + +D   +R  + ++     + FPN KPM+L++S+W+A        ++K  W        AP+V  YKD  V
Sbjct:   56 GCGFQTKHMYRFGWFSMKLKLVGGDSAGVVTAYYMCSENGAGPERDEIDFEFLGNRTGQPYIIQTNVYKNGTGNREMRHSLWFDPTKDYHTYSILWNNHQLVFFVDRVPIRVYKNSDKVPNNDFFPNQKPMYLFSSIWNADDWATRGGLEKTDW------KKAPFVSSYKDFAV 223          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: GUB_CLOTM (Beta-glucanase OS=Clostridium thermocellum GN=licB PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.518e-17
Identity = 52/142 (36.62%), Postives = 72/142 (50.70%), Query Frame = -2
Query:  366 WRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVG 791
            +RS + F YG +   ++  K      +F  Y    + +   DEID EFLGKD T  Q N+Y    G  E +H+LGFD S+ FH Y  +W PD I + +DGK V R  RN     P  P  +  ++W    +D+  W G Y G
Sbjct:   95 YRSKSFFGYGYYEVRMKAAKNVGIVSSFFTYTGPSDNNP-WDEIDIEFLGKDTTKAQFNWYKNEVGGNEYLHNLGFDASQDFHTYGFEWRPDYIDFYVDGKKVYRGTRN----IPVTPGKIMMNLWPGKGVDE--WLGRYDG 229          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH22_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.590e-17
Identity = 52/137 (37.96%), Postives = 77/137 (56.20%), Query Frame = -2
Query:  408 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEG--FP-NKPMFLYASVWDA 800
            G+ ++S   +L+G  S  ++   GN++G    +YL S     + DEIDFEFLG    +   + TN YT G G++E+   L FD +  FH Y I W P  I + +DG  +R  +  E  G  FP NKPM +Y+S+W+A
Sbjct:   54 GSGFQSKNEYLFGKVSMQMKLVPGNSAGTVTTLYLKS--PGTTWDEIDFEFLGNSSGEPYTLHTNVYTQGKGDKEQQFKLWFDPTANFHTYTILWNPQRIIFTVDGTPIREFKNMESLGTLFPKNKPMRMYSSLWNA 188          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: BRU1_SOYBN (Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.590e-17
Identity = 60/165 (36.36%), Postives = 86/165 (52.12%), Query Frame = -2
Query:  333 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFP---NKPMFLYASVWDASHIDKARWCGPYVGCD---APYVCLYKD 800
            G+ ++S   +L+G     ++   GN++G     YLSS     + DEIDFEFLG    D  I+ TN +T G GNRE+   L FD +  FH Y I W P  I +L+D   +R  +  E  G P   N+PM +Y+S+W+A   D     G  V  D   AP+   Y++
Sbjct:   63 GSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQ--GPTHDEIDFEFLGNLSGDPYILHTNIFTQGKGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNTPIRVFKNAEPLGVPFPKNQPMRIYSSLWNA---DDWATRGGLVKTDWSKAPFTAYYRN 222          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.383e-17
Identity = 63/165 (38.18%), Postives = 91/165 (55.15%), Query Frame = -2
Query:  336 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEG-DKSQDEIDFEFLGKDKTI---VQTNYYTTGTGNR--EEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNE--GEGFPNKPMFLYASVWDASHIDKARWCGPYVG--CDAPYVCLYK 800
            G+ + S+  + +G +SS+I+ P   T+G+    Y S+ +  +K+ DE+D EFLG  K      QTN Y  G+ +R  EE + L FD S+ FH Y I W P  I + +D   +R   RN+  G  +P KPM LYA++WDAS  D A   G Y      AP+V  +K
Sbjct:   63 GSGFISSNMYQHGFYSSMIKLPADYTAGVVVAFYTSNGDVFEKTHDELDIEFLGNIKGKPWRFQTNLYGNGSTHRGREERYRLWFDPSKEFHRYSILWTPHKIIFWVDDVPIREVIRNDAMGADYPAKPMALYATIWDAS--DWATSGGKYKANYKFAPFVAEFK 225          
The following BLAST results are available for this feature:
BLAST of CN185887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
XTH5_ARATH3.996e-1835.09Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_TOBAC8.901e-1834.50Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH29_ARATH8.901e-1838.95Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH26_ARATH8.901e-1838.69Probable xyloglucan endotransglucosylase/hydrolase... [more]
GUB_ORPSP8.901e-1838.03Beta-glucanase OS=Orpinomyces sp. (strain PC-2) GN... [more]
XTH8_ARATH1.163e-1733.33Probable xyloglucan endotransglucosylase/hydrolase... [more]
GUB_CLOTM1.518e-1736.62Beta-glucanase OS=Clostridium thermocellum GN=licB... [more]
XTH22_ARATH2.590e-1737.96Xyloglucan endotransglucosylase/hydrolase protein ... [more]
BRU1_SOYBN2.590e-1736.36Brassinosteroid-regulated protein BRU1 OS=Glycine ... [more]
XTH30_ARATH3.383e-1738.18Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185887 ID=CN185887; Name=CN185887; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTCGAATCACAGTTCCATCTTATTGCTTAGATATTTCAAGAAAGC
CGTCTAGAGCAAGCATACAGAAGAAGCCTGAGACAGTGACATCCCTAAAC
AAGAAAGCAAATCAGATTACACCATTCAAAAATTTATTACAACAGACTGA
AATTGCTAAGATACAATTGGTAGGAACAGCAACCAACCACCACACAGTGA
AATCCGATTGATGAAAAGACATTGTAAATGGAAGAACAAAATCCCAAGAA
ACATCAGAACAACTCAAATACGCCACTCACCAAATCAAGAATCACAAGGG
CACTCCACCGCAGTGGCAACAGGCACATGAATGTCTTTGTAGAGGCAAAC
ATAAGGTGCATCACAGCCCACGTAGGGCCCACACCACCTGGCCTTATCAA
TGTGGCTAGCATCCCAAACTGAAGCATACAAAAACATTGGTTTATTGGGA
AACCCCTCACCCTCGTTCCTCTCAGCTCTCCTCACCACCTTCCCATCAAT
CAACCACTGGATCAAATCTGGACCCCACTTGATCACGTACTCATGAAATC
CTTCAGAACAATCGAACCCCAGATCATGAATCTCCTCTCTATTCCCGGTT
CCTGTAGTGTAATAATTGGTTTGAACGATAGTCTTGTCCTTGCCAAGGAA
TTCAAAGTCGATTTCGTCTTGGGATTTGTCGCCTTCTAGAGAAGAAAGGT
AGATGTTGAAGTTGAGGCCACTAGTGTTGCCTTTGGGGCACTGGATCAGG
GAGCTGAAGGTGCCGTAAAGGAAGCGAGTGGTGGAGCGCCACCTGGCTCC
G
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