CN185887

Overview
NameCN185887
Unique NameCN185887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2452 contig Csv1_Contig2452:148..949. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.418e-17
Identity = 55/142 (38.73%), Postives = 78/142 (54.93%), Query Frame = -2
Query:  405 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKS-QDEIDFEFLG----KDKTIVQTNYYTTGTGN-----REEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDAS 800
            G+ ++S   F  G F + I+   G T+G+  ++YLS+ E      DE+D EFLG    K  T+ QTN Y  G+G+     RE    L FD ++ FH Y I W P  I +L+D   +RR  +     FP +PM+LY S+WDAS
Sbjct:   72 GSGFKSVKPFRSGYFGANIKLQPGYTAGVITSLYLSNNEAHPGFHDEVDIEFLGTTFGKPYTL-QTNVYIRGSGDGKIIGREMKFRLWFDPTKDFHHYAILWSPREIIFLVDDIPIRRYPKKSASTFPLRPMWLYGSIWDAS 212          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH23_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.770e-17
Identity = 52/137 (37.96%), Postives = 76/137 (55.47%), Query Frame = -2
Query:  408 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEG--FP-NKPMFLYASVWDA 800
            G+ ++S   +L+G     I+   GN++G     YL S     + DEIDFEFLG    D   + TN +T G G+RE+   L FD +  FH Y I W P  I + +DG  +R  +  E +G  FP N+PM +Y+S+W+A
Sbjct:   57 GSGFQSKNEYLFGKIDMQIKLVAGNSAGTVTAYYLKS--PGSTWDEIDFEFLGNLSGDPYTLHTNVFTQGKGDREQQFKLWFDPTSDFHTYSILWNPQRIIFSVDGTPIREFKNMESQGTLFPKNQPMRMYSSLWNA 191          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH8_ORYSJ (Xyloglucan endotransglycosylase/hydrolase protein 8 OS=Oryza sativa subsp. japonica GN=XTH8 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.536e-17
Identity = 59/165 (35.76%), Postives = 87/165 (52.73%), Query Frame = -2
Query:  336 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFP-NKPMFLYASVWDAS-----HID-KARWCGPYVGCDAPYVCLYK 800
            G+ + S   +L+G FS  ++   GN++G   + YLSS EGD   DEID EF+G    +  ++ TN +  G G +E    L FD +  FH Y I W P  I + +D   VR  ++ +   +P +KPM L+A++WD S     H D K  W G      AP+V  Y+
Sbjct:   62 GSGFTSKDTYLFGEFSVQMKLVGGNSAGTVTSFYLSSGEGD-GHDEIDIEFMGNLSGNPYVMNTNVWANGDGKKEHQFYLWFDPTADFHTYKIIWNPQNIIFQVDDVPVRTFKKYDDLAYPQSKPMRLHATLWDGSYWATRHGDVKIDWSG------APFVVSYR 219          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH9_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.285e-16
Identity = 57/168 (33.93%), Postives = 90/168 (53.57%), Query Frame = -2
Query:  324 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFP---NKPMFLYASVWDASHIDKARWCGPYVGCD---APYVCLYKDIHV 800
            GA + S +++L+G  S  I+  +G+++G     Y+SS     + +E DFEFLG    +  IVQTN Y  G GNRE+  +L FD +  FH Y I W    + +++D   +R  +  E +G P   ++ M +Y+S+W+A   D     G  V  D   AP+V  YK+  +
Sbjct:   58 GAGFESRSKYLFGKVSIQIKLVEGDSAGTVTAFYMSS--DGPNHNEFDFEFLGNTTGEPYIVQTNIYVNGVGNREQRLNLWFDPTTEFHTYSILWSKRSVVFMVDETPIRVQKNLEEKGIPFAKDQAMGVYSSIWNA---DDWATQGGLVKTDWSHAPFVASYKEFQI 220          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.285e-16
Identity = 52/137 (37.96%), Postives = 75/137 (54.74%), Query Frame = -2
Query:  402 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLG--KDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVR--RAERNEGEGFPNKPMFLYASVWDASH 800
            G+ + S   +  G F   I+ P  +TSG+    YL+S     + DE+DFEFLG  + K  VQTN +T G GNRE+   L FD S+ FH Y I W P  I   +D   VR  +   ++G  +P+KPM +  S+W+  +
Sbjct:   70 GSGFESKNHYESGFFQIRIKVPPKDTSGVVTAFYLTSK--GNTHDEVDFEFLGNKEGKLAVQTNVFTNGKGNREQKLALWFDPSKDFHTYAILWNPYQIVLYVDNIPVRVFKNTTSQGMNYPSKPMQVVVSLWNGEN 204          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH12_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 12 OS=Arabidopsis thaliana GN=XTH12 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.285e-16
Identity = 52/137 (37.96%), Postives = 78/137 (56.93%), Query Frame = -2
Query:  408 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEG--FP-NKPMFLYASVWDA 800
            G+ ++S   +L+G     I+   GN++G     YLSS    ++ DEIDFEFLG       ++ TN +T G GNRE    L FD +  FH Y + W P  I +L+DG  +R  + NE  G  +P ++PM +Y+S+W+A
Sbjct:   58 GSGFQSKKEYLFGKIDMKIKLVPGNSAGTVTAYYLSSK--GETWDEIDFEFLGNVTGQPYVIHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEA 192          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.679e-16
Identity = 49/133 (36.84%), Postives = 71/133 (53.38%), Query Frame = -2
Query:  411 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDK---TIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWD 800
            G  + S   +  G F   I+ P GNT G+    YL+S  G    DEIDFEFLG +      +QTN +  G GNREE   L F+ ++ +H Y + W P  I + +D   +R  +   G  +P+KPM + AS+W+
Sbjct:   66 GGGFESKDAYGSGLFEMRIKVPSGNTGGIVTAFYLTSKGG--GHDEIDFEFLGNNNGKPVTLQTNLFLNGEGNREERFLLWFNPTKHYHTYGLLWNPYQIVFYVDNIPIRVYKNENGVSYPSKPMQVEASLWN 196          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.193e-16
Identity = 57/175 (32.57%), Postives = 88/175 (50.29%), Query Frame = -2
Query:  309 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSS-LEGDKSQDEIDFEFLGKDKT---IVQTNYYTTGTGNREEI-----HDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASH--IDKARWCGPYVGCDAPYVCLYKDIHVPVATA 800
            G+ ++S   +  G F + I+   G T+G++ ++YLS+  E     DE+D EFLG        +QTN +  G+G+R  I       L FD ++ FH Y I W P+ I + +D   +R   R     FP +PM++Y S+WDAS    +  R    Y     P+V  YK+  +   TA
Sbjct:   68 GSGFKSLRPYRSGYFGASIKLQPGFTAGVDTSLYLSNNQEHPGDHDEVDIEFLGTTPGKPYSLQTNVFVRGSGDRNVIGREMKFTLWFDPTQDFHHYAILWNPNQIVFFVDDVPIRTYNRKNEAIFPTRPMWVYGSIWDASDWATENGRIKADY--RYQPFVAKYKNFKLAGCTA 240          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH16_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.193e-16
Identity = 58/172 (33.72%), Postives = 88/172 (51.16%), Query Frame = -2
Query:  312 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKT---IVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFP---NKPMFLYASVWDASHIDKARWCGPYVGCD---APYVCLYKDIHVPVAT 800
            G+ ++S   +L+G     ++   GN++G     YLSS EG  + DEIDFEFLG +     ++ TN +  G GNRE+   L FD ++ FH Y + W P  I +++D   +R     E  G P   N+PM +Y+S+W+A   D     G  V  D   AP+   Y+  +    T
Sbjct:   58 GSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSS-EGP-THDEIDFEFLGNETGKPYVLHTNVFAQGKGNREQQFYLWFDPTKNFHTYSLVWRPQHIIFMVDNVPIRVFNNAEQLGVPFPKNQPMKIYSSLWNA---DDWATRGGLVKTDWSKAPFTAYYRGFNAAACT 224          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.884e-16
Identity = 57/171 (33.33%), Postives = 87/171 (50.88%), Query Frame = -2
Query:  324 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVR--RAERNEGEGFP-NKPMFLYASVWDASH------IDKARWCGPYVGCDAPYVCLYKDIHV 800
            G  ++S   +L+G FS  I+   G+++G     YLSS   +   DEIDFEFLG       I+QTN +T G G+RE+   L FD +  +H Y + W    I + +D   +R  +   + G  FP N+PM +Y S+W+A        ++K  W        AP++  YK  H+
Sbjct:   62 GTGFQSKGSYLFGHFSMYIKLVPGDSAGTVTAFYLSSTNAE--HDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTTQYHRYSVLWNMYQIVFYVDDYPIRVFKNSNDLGVKFPFNQPMKIYNSLWNADDWATRGGLEKTDW------SKAPFIASYKGFHI 224          
The following BLAST results are available for this feature:
BLAST of CN185887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
XTH32_ARATH4.418e-1738.73Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH23_ARATH5.770e-1737.96Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH8_ORYSJ7.536e-1735.76Xyloglucan endotransglycosylase/hydrolase protein ... [more]
XTH9_ARATH1.285e-1633.93Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_ARATH1.285e-1637.96Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH12_ARATH1.285e-1637.96Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH3_ARATH1.679e-1636.84Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH31_ARATH2.193e-1632.57Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH16_ARATH2.193e-1633.72Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHA_PHAAN4.884e-1633.33Xyloglucan endotransglucosylase/hydrolase protein ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185887 ID=CN185887; Name=CN185887; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTCGAATCACAGTTCCATCTTATTGCTTAGATATTTCAAGAAAGC
CGTCTAGAGCAAGCATACAGAAGAAGCCTGAGACAGTGACATCCCTAAAC
AAGAAAGCAAATCAGATTACACCATTCAAAAATTTATTACAACAGACTGA
AATTGCTAAGATACAATTGGTAGGAACAGCAACCAACCACCACACAGTGA
AATCCGATTGATGAAAAGACATTGTAAATGGAAGAACAAAATCCCAAGAA
ACATCAGAACAACTCAAATACGCCACTCACCAAATCAAGAATCACAAGGG
CACTCCACCGCAGTGGCAACAGGCACATGAATGTCTTTGTAGAGGCAAAC
ATAAGGTGCATCACAGCCCACGTAGGGCCCACACCACCTGGCCTTATCAA
TGTGGCTAGCATCCCAAACTGAAGCATACAAAAACATTGGTTTATTGGGA
AACCCCTCACCCTCGTTCCTCTCAGCTCTCCTCACCACCTTCCCATCAAT
CAACCACTGGATCAAATCTGGACCCCACTTGATCACGTACTCATGAAATC
CTTCAGAACAATCGAACCCCAGATCATGAATCTCCTCTCTATTCCCGGTT
CCTGTAGTGTAATAATTGGTTTGAACGATAGTCTTGTCCTTGCCAAGGAA
TTCAAAGTCGATTTCGTCTTGGGATTTGTCGCCTTCTAGAGAAGAAAGGT
AGATGTTGAAGTTGAGGCCACTAGTGTTGCCTTTGGGGCACTGGATCAGG
GAGCTGAAGGTGCCGTAAAGGAAGCGAGTGGTGGAGCGCCACCTGGCTCC
G
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