CN185887

Overview
NameCN185887
Unique NameCN185887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2452 contig Csv1_Contig2452:148..949. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.884e-16
Identity = 55/141 (39.01%), Postives = 75/141 (53.19%), Query Frame = -2
Query:  405 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEG-DKSQDEIDFEFLG---KDKTIVQTNYYTTGT--GNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEG---EGFPNKPMFLYASVWDAS 800
            GA   S  ++ YG FS+ ++ P G  SG+    YLS+ E   KS DEID E LG   +D   +QTN Y  G+    REE     FD ++ FH+Y + W      +L+D   VR+   N G     +P+KPM LY +VWD S
Sbjct:   72 GAGLVSKNKYHYGFFSARLKLPAGFASGVVVAFYLSNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFP-NRGAFTSAYPSKPMSLYVTVWDGS 211          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH13_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 13 OS=Arabidopsis thaliana GN=XTH13 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.884e-16
Identity = 51/137 (37.23%), Postives = 78/137 (56.93%), Query Frame = -2
Query:  408 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEG--FP-NKPMFLYASVWDA 800
            G+ ++S   +L+G     ++   GN++G     YLSS    ++ DEIDFEFLG       ++ TN +T G GNRE    L FD +  FH Y + W P  I +L+DG  +R  + NE  G  +P ++PM +Y+S+W+A
Sbjct:   57 GSGFQSKKEYLFGKIDMKMKLVAGNSAGTVTAYYLSSK--GETWDEIDFEFLGNVTGQPYVLHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEA 191          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.379e-16
Identity = 57/171 (33.33%), Postives = 89/171 (52.05%), Query Frame = -2
Query:  324 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVR--RAERNEGEGFP-NKPMFLYASVWDASH------IDKARWCGPYVGCDAPYVCLYKDIHV 800
            G  ++S   +L+G FS  I+   G+++G     YLSS   +   DEIDFEFLG       I+QTN +T G G+RE+   L FD ++ +H Y I W    I + +D   +R  +  ++ G  FP ++PM +Y S+W+A        ++K  W        AP++  YK  H+
Sbjct:   64 GTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYLSSQNAE--HDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEYHRYSILWNLYQIVFFVDEVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTDW------SKAPFIAAYKGFHI 226          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH15_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana GN=XTH15 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.379e-16
Identity = 60/182 (32.97%), Postives = 90/182 (49.45%), Query Frame = -2
Query:  282 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKT---IVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFP---NKPMFLYASVWDASHIDKARWCGPYVGCD---APYVCLYKDIHVPVATAVECPCDS*F 800
            G+ ++S   +L+G     ++   GN++G     YLSS     + DEIDFEFLG +     ++ TN +  G G+RE+   L FD ++ FH Y I W P  I +L+D   +R     E  G P   ++PM +Y+S+W+A   D     G  V  D   AP+   Y+  +    TA    CD  F
Sbjct:   59 GSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGA--THDEIDFEFLGNETGKPYVLHTNVFAQGKGDREQQFYLWFDPTKNFHTYSIVWRPQHIIFLVDNLPIRVFNNAEKLGVPFPKSQPMRIYSSLWNA---DDWATRGGLVKTDWSKAPFTAYYRGFNAAACTA-SSGCDPKF 234          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH14_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 14 OS=Arabidopsis thaliana GN=XTH14 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.088e-15
Identity = 51/137 (37.23%), Postives = 76/137 (55.47%), Query Frame = -2
Query:  408 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNE--GEGFP-NKPMFLYASVWDA 800
            G+ ++S   +L+G     ++   GN++G     YLSS     + DEIDFEFLG        + TN +T G G+RE    L FD +  FH Y + W P  I +L+DG  +R  + NE  G  +P N+PM +Y+S+W+A
Sbjct:   61 GSGFQSKKEYLFGKIDMKLKLVAGNSAGTVTAYYLSSK--GTAWDEIDFEFLGNRTGHPYTIHTNVFTGGKGDREMQFRLWFDPTADFHTYTVHWNPVNIIFLVDGIPIRVFKNNEKNGVAYPKNQPMRIYSSLWEA 195          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.135e-15
Identity = 58/171 (33.92%), Postives = 88/171 (51.46%), Query Frame = -2
Query:  324 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVR--RAERNEGEGFP-NKPMFLYASVWDASH------IDKARWCGPYVGCDAPYVCLYKDIHV 800
            G  +++   +L+G FS  I+   G+++G      LSS   +   DEIDFEFLG       I+QTN +T G G+RE+   L FD ++ +H Y + W    I +L+D   +R  +  +  G  FP N+PM +Y S+W+A        ++K  W        AP+V  YK  HV
Sbjct:   63 GTGFQTKGSYLFGHFSMNIKMVPGDSAGTVTAFCLSSQNAE--HDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHRYSVLWNMYQIVFLVDNIPIRVFKNLKELGVKFPFNQPMKVYNSLWNADDWATRGGLEKTDW------SKAPFVAEYKGFHV 225          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.400e-15
Identity = 55/171 (32.16%), Postives = 90/171 (52.63%), Query Frame = -2
Query:  324 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVR--RAERNEGEGFP-NKPMFLYASVWDASH------IDKARWCGPYVGCDAPYVCLYKDIHV 800
            G  +++   +L+G FS  I+   G+++G     YLSS   +   DEIDFEFLG       I+QTN ++ G G+RE+   L FD ++ +H Y + W   +I + +D   +R  +  ++ G  +P ++PM LY+S+W+A         +K  W        AP+V  Y+  HV
Sbjct:   63 GTGFQTRGSYLFGHFSMHIKLVGGDSAGTVTAFYLSSQNSE--HDEIDFEFLGNRTGQPYILQTNVFSGGKGDREQRIYLWFDPTKDYHSYSVLWNLYMIAFFVDDTPIRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDW------SKAPFVASYRGFHV 225          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.400e-15
Identity = 60/184 (32.61%), Postives = 93/184 (50.54%), Query Frame = -2
Query:  288 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAE--RNEGEGFPN-KPMFLYASVWDASHIDKARWCGPYVGCD---APYVCLYKDIHVPVATA----VECPCDS 800
            G+ +++   +L+G     ++   GN++G     YL S +GD + DEIDFEFLG    D   + TN YT G G+RE+   L FD +  FH Y + W P  I +++D   VR  +  ++ G  +P  +PM LY+S+W+A   D+    G  V  D   AP+   Y++       +      CP  S
Sbjct:   61 GSGFQTKKEYLFGKIDMQLKLVPGNSAGTVTAYYLKS-KGD-TWDEIDFEFLGNLTGDPYTMHTNVYTQGKGDREQQFHLWFDPTADFHTYSVLWNPHHIVFMVDDIPVREFKNLQHMGIQYPKLQPMRLYSSLWNA---DQWATRGGLVKTDWSKAPFTASYRNFRADACVSSGGRSSCPAGS 239          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH10_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.212e-15
Identity = 59/164 (35.98%), Postives = 82/164 (50.00%), Query Frame = -2
Query:  351 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGE---GFPN-KPMFLYASVWDASH------IDKARWC-GPYVGCDAPY 800
            GA + S   FL+G     I+  +G++ G     Y+SS     ++DEIDFEFLG       I+QTN Y  G  NREE   L FD ++ FH Y I W    I +++D ++  R  RN GE    +P  +PM + AS+W+          DK  W  GP+V     Y
Sbjct:   68 GASFSSIQTFLFGQIDMKIKLIRGSSQGTVVAYYMSS--DQPNRDEIDFEFLGNVNGQPYILQTNVYAEGLDNREERIHLWFDPAKDFHTYSILWNIHQIVFMVD-QIPIRLYRNHGEKGVAYPRLQPMSVQASLWNGESWATRGGHDKIDWSKGPFVASFGDY 228          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.203e-14
Identity = 55/183 (30.05%), Postives = 89/183 (48.63%), Query Frame = -2
Query:  297 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGF---PNKPMFLYASVWDASH------IDKARWCGPYVGCDAPYVCLYKDIHV---PVATAVECP 800
            G  + S  ++L+G  S  I+   G+++G     Y++S +    +DE+DFEFLG        VQTN +  G G+RE+  +L FD S  +H Y I W    I + +D   +R  + NE +      ++PM +Y+++W+A        ++K  W        AP+   YKD  +   PV     CP
Sbjct:   66 GCGFASKRKYLFGRVSMKIKLIPGDSAGTVTAFYMNS-DTATVRDELDFEFLGNRSGQPYSVQTNIFAHGKGDREQRVNLWFDPSMDYHTYTILWSHKHIVFYVDDVPIREYKNNEAKNIAYPTSQPMGVYSTLWEADDWATRGGLEKIDW------SKAPFYAYYKDFDIEGCPVPGPTFCP 241          
The following BLAST results are available for this feature:
BLAST of CN185887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
XTH33_ARATH4.884e-1639.01Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH13_ARATH4.884e-1637.23Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH_SOYBN6.379e-1633.33Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH15_ARATH6.379e-1632.97Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH14_ARATH1.088e-1537.23Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTHB_PHAAN4.135e-1533.92Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_WHEAT5.400e-1532.16Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH25_ARATH5.400e-1532.61Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH10_ARATH9.212e-1535.98Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH6_ARATH1.203e-1430.05Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185887 ID=CN185887; Name=CN185887; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTCGAATCACAGTTCCATCTTATTGCTTAGATATTTCAAGAAAGC
CGTCTAGAGCAAGCATACAGAAGAAGCCTGAGACAGTGACATCCCTAAAC
AAGAAAGCAAATCAGATTACACCATTCAAAAATTTATTACAACAGACTGA
AATTGCTAAGATACAATTGGTAGGAACAGCAACCAACCACCACACAGTGA
AATCCGATTGATGAAAAGACATTGTAAATGGAAGAACAAAATCCCAAGAA
ACATCAGAACAACTCAAATACGCCACTCACCAAATCAAGAATCACAAGGG
CACTCCACCGCAGTGGCAACAGGCACATGAATGTCTTTGTAGAGGCAAAC
ATAAGGTGCATCACAGCCCACGTAGGGCCCACACCACCTGGCCTTATCAA
TGTGGCTAGCATCCCAAACTGAAGCATACAAAAACATTGGTTTATTGGGA
AACCCCTCACCCTCGTTCCTCTCAGCTCTCCTCACCACCTTCCCATCAAT
CAACCACTGGATCAAATCTGGACCCCACTTGATCACGTACTCATGAAATC
CTTCAGAACAATCGAACCCCAGATCATGAATCTCCTCTCTATTCCCGGTT
CCTGTAGTGTAATAATTGGTTTGAACGATAGTCTTGTCCTTGCCAAGGAA
TTCAAAGTCGATTTCGTCTTGGGATTTGTCGCCTTCTAGAGAAGAAAGGT
AGATGTTGAAGTTGAGGCCACTAGTGTTGCCTTTGGGGCACTGGATCAGG
GAGCTGAAGGTGCCGTAAAGGAAGCGAGTGGTGGAGCGCCACCTGGCTCC
G
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