CN185887

Overview
NameCN185887
Unique NameCN185887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2452 contig Csv1_Contig2452:148..949. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: CRH1_YEAST (Probable glycosidase CRH1 OS=Saccharomyces cerevisiae GN=CRH1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.018e-13
Identity = 50/164 (30.49%), Postives = 76/164 (46.34%), Query Frame = -2
Query:  324 RSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTG---TGNREEIHDLGFDC-SEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKA----RWCGPYVGC-DAPYVCLYKDIHV 788
            +S    +YG    +++   G  +G+  + YL S       DEID E++G D T  Q+N+++ G   T +R E H  G D  ++ FH Y + W  D   W +DG+ VR       EG+P  PM+L   +W     D A     W G      DAP+    + + V
Sbjct:   99 KSNFYIMYGKLEVILKAANG--TGIVSSFYLQS----DDLDEIDIEWVGGDNTQFQSNFFSKGDTTTYDRGEFH--GVDTPTDKFHNYTLDWAMDKTTWYLDGESVRVLSNTSSEGYPQSPMYLMMGIWAGGDPDNAAGTIEWAGGETNYNDAPFTMYIEKVIV 254          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.330e-13
Identity = 47/138 (34.06%), Postives = 76/138 (55.07%), Query Frame = -2
Query:  402 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDK---TIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVR--RAERNEGEGFPNKPMFLYASVWDASH 800
            G+ + S + +  G F   I+ P  +++G+    YL+S +GD + DE+DFEFLG  +     +QTN ++ G G RE+     FD +  FH Y I W P  I + +D   +R  +  +  G  +P+KPM L AS+W+  +
Sbjct:   63 GSGFESKSHYGSGFFQMRIKLPPRDSAGVVTAFYLTS-KGD-THDEVDFEFLGNRQGKPIAIQTNVFSNGQGGREQKFVPWFDPTTSFHTYGILWNPYQIVFYVDKVPIRVFKNIKKSGVNYPSKPMQLVASLWNGEN 198          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: CRR1_ASHGO (Probable glycosidase CRR1 OS=Ashbya gossypii GN=CRR1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.471e-12
Identity = 47/154 (30.52%), Postives = 75/154 (48.70%), Query Frame = -2
Query:  378 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEI--HDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEG-------EGFPNKPMFLYASVWDASHIDKAR----WCG 800
            G+   S+  FLYG  +  ++  +G    +   +++SS     +QDEID+EF+G +   VQTNYY  G  N   +  H L  +  E +H Y + W  + I W++DG++VR   + +          +P  PM L  S+W A   D  +    W G
Sbjct:  186 GSLISSSKVFLYGRAAVTMKTSRG-PGVITAIVFMSS-----TQDEIDYEFVGSELHTVQTNYYYQGELNHSRMRRHSLPSNSHEEYHIYEVDWDAERIHWMVDGEIVRTLYKRDTWDPVHKIYKYPQTPMMLQISLWPAGTPDAPQGTIEWAG 333          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: CRR1_YEAST (Probable glycosidase CRR1 OS=Saccharomyces cerevisiae GN=CRR1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.070e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = -2
Query:  414 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTG--TGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAER-------NEGEGFPNKPMFLYASVW 800
            G+   ST  FLYG  S  ++     + G+     L+S  GD    EIDFE+LG D    Q+NYY+ G     R +   +G D    +H Y I W PD I W +DGK+ R   +       ++   +P  PM L  +VW
Sbjct:  178 GSLITSTRSFLYGKAS--VRMKTARSRGVVTAFDLTSAIGD----EIDFEWLGGDLMTAQSNYYSQGHLDYTRMQRFPVGADTWATYHTYEIDWDPDRIIWYVDGKIARTVLKKDTWDPISKEYRYPQTPMRLEIAVW 309          
The following BLAST results are available for this feature:
BLAST of CN185887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
CRH1_YEAST1.018e-1330.49Probable glycosidase CRH1 OS=Saccharomyces cerevis... [more]
XTH2_ARATH1.330e-1334.06Xyloglucan endotransglucosylase/hydrolase protein ... [more]
CRR1_ASHGO1.471e-1230.52Probable glycosidase CRR1 OS=Ashbya gossypii GN=CR... [more]
CRR1_YEAST8.070e-1134.06Probable glycosidase CRR1 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185887 ID=CN185887; Name=CN185887; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTCGAATCACAGTTCCATCTTATTGCTTAGATATTTCAAGAAAGC
CGTCTAGAGCAAGCATACAGAAGAAGCCTGAGACAGTGACATCCCTAAAC
AAGAAAGCAAATCAGATTACACCATTCAAAAATTTATTACAACAGACTGA
AATTGCTAAGATACAATTGGTAGGAACAGCAACCAACCACCACACAGTGA
AATCCGATTGATGAAAAGACATTGTAAATGGAAGAACAAAATCCCAAGAA
ACATCAGAACAACTCAAATACGCCACTCACCAAATCAAGAATCACAAGGG
CACTCCACCGCAGTGGCAACAGGCACATGAATGTCTTTGTAGAGGCAAAC
ATAAGGTGCATCACAGCCCACGTAGGGCCCACACCACCTGGCCTTATCAA
TGTGGCTAGCATCCCAAACTGAAGCATACAAAAACATTGGTTTATTGGGA
AACCCCTCACCCTCGTTCCTCTCAGCTCTCCTCACCACCTTCCCATCAAT
CAACCACTGGATCAAATCTGGACCCCACTTGATCACGTACTCATGAAATC
CTTCAGAACAATCGAACCCCAGATCATGAATCTCCTCTCTATTCCCGGTT
CCTGTAGTGTAATAATTGGTTTGAACGATAGTCTTGTCCTTGCCAAGGAA
TTCAAAGTCGATTTCGTCTTGGGATTTGTCGCCTTCTAGAGAAGAAAGGT
AGATGTTGAAGTTGAGGCCACTAGTGTTGCCTTTGGGGCACTGGATCAGG
GAGCTGAAGGTGCCGTAAAGGAAGCGAGTGGTGGAGCGCCACCTGGCTCC
G
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