CN185880

Overview
NameCN185880
Unique NameCN185880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185880 vs. ExPASy Swiss-Prot
Match: DERL1_PONAB (Derlin-1 OS=Pongo abelii GN=DERL1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.629e-17
Identity = 58/202 (28.71%), Postives = 103/202 (50.99%), Query Frame = 3
Query:  123 VWRLITNFFFL----GTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPL-ATGKNLLKTPKWVQKLVARWRIGA------PAINRAQPERTTGVAFR--GRSYRLSD 689
            +WR IT  F+     GT  + + + L  +  Y   LE G F+ R AD+L+M++F  + +++       +   L I L+  ++YVW++   +  ++ +     KA YLPW +L  + I G  ++ +L+G + GHLY+FL   +P+   G+N L TP+++ + +   R G       PA  R   ++  G      G+ +RL D
Sbjct:   52 IWRPITATFYFPVGPGTGFL-YLVNLYFLYHYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQ--LLMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRLGD 250          
BLAST of CN185880 vs. ExPASy Swiss-Prot
Match: DERL1_MOUSE (Derlin-1 OS=Mus musculus GN=Derl1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.740e-17
Identity = 57/202 (28.22%), Postives = 103/202 (50.99%), Query Frame = 3
Query:  123 VWRLITNFFFL----GTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPL-ATGKNLLKTPKWVQKLVARWRIGA------PAINRAQPERTTGVAFR--GRSYRLSD 689
            +WR  T  F+     GT  + + + L  + +Y   LE G F+ R AD+L+M++F  + +++       +   L I L+  ++YVW++   +  ++ +     KA YLPW +L  + I G  ++ +L+G + GHLY+FL   +P+   G+N L TP+++ + +   R G       PA  R   ++  G      G+ +RL D
Sbjct:   52 IWRPFTATFYFPVGPGTGFL-YLVNLYFLYQYSTRLEAGAFDGRPADYLFMLLFNWICIVITGLAMDMQ--LLMIPLIMSVLYVWAQLNRDLIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRLGD 250          
BLAST of CN185880 vs. ExPASy Swiss-Prot
Match: DERL1_DROME (Derlin-1 OS=Drosophila melanogaster GN=CG10908 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.056e-16
Identity = 59/185 (31.89%), Postives = 91/185 (49.19%), Query Frame = 3
Query:  123 VWRLITNFFFLGTFS---INFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKN-LLKTPKWVQKLV-----ARWRIGAPAINRAQPERTT 650
            +WR +T+ F     S    +F I    I +Y   LEK  + R  AD+L+++I  A+  L      IF  YFL  +LV  + Y+W +   +  ++ +     KA YLPW + A + IF   L   L+GI  GH+YYF    +    G   LL+TP+++++LV          G P  +RA P + T
Sbjct:   51 LWRCMTSLFVFPISSNTAFHFLINCFFIVQYSSKLEKDQYSRSPADYLYLLIVSAV--LANIGGMIFNVYFLMDTLVLAITYIWCQLNKDVTVSFWFGTRFKAMYLPWVLAAFEFIFHFSLA-SLVGIFVGHVYYFFKFQYSQDLGGTPLLETPQFLKRLVPDVSGGFGGFGLPPESRAPPRQAT 232          
BLAST of CN185880 vs. ExPASy Swiss-Prot
Match: YFFH_SCHPO (Uncharacterized derlin-like protein C1687.17c OS=Schizosaccharomyces pombe GN=SPAC1687.17c PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 48/139 (34.53%), Postives = 75/139 (53.96%), Query Frame = 3
Query:  126 WRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLV---LSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGS--PLVPDLLGIIAGHLYYFLT 527
            WR IT F ++G F +   + L  + R+   LE+     +T  FL  ++    SLLV    S +P   SYF      F ++Y+WS + P  +I+I GL  +KA Y+PW M+ L  +     PL+ DL+  + GH+Y+F+T
Sbjct:   31 WRAITTFLYVGPFGLELILYLSFLLRFMSMLERSSPPPQTQSFLKTVLIVWFSLLVTSYFSYMPFAASYFS-----FTMLYIWSWKHPLYRISILGLFDVKAPYVPWVMVLLRWLRTGIFPLL-DLISALIGHVYFFVT 163          
BLAST of CN185880 vs. ExPASy Swiss-Prot
Match: DERL1_CAEEL (Derlin-1 OS=Caenorhabditis elegans GN=cup-2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 44/161 (27.33%), Postives = 81/161 (50.31%), Query Frame = 3
Query:  126 WRLITNFFFLGTFSINFGIRLLMIA----RYGVNLEKGPFERRTADFLWMMIFGALSLLVLS-AIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLV 593
            WR +T   +    +   G   LM+      Y   LE   +  R+AD+L+M+IF       L  A+ I   YFL   +V  ++YVW +   ++ ++ +  +   A YLPW +   + +       +L+GI+ GH Y+F+ + +P   G +L+ TP+++ +L+
Sbjct:   52 WRPLTALIYYPV-TPQTGFHWLMMCYFLYNYSKALESETYRGRSADYLFMLIFNWFFCSGLCMALDI---YFLLEPMVISVLYVWCQVNKDTIVSFWFGMRFPARYLPWVLWGFNAVLRGGGTNELVGILVGHAYFFVALKYPDEYGVDLISTPEFLHRLI 208          
The following BLAST results are available for this feature:
BLAST of CN185880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
DERL1_PONAB1.629e-1728.71Derlin-1 OS=Pongo abelii GN=DERL1 PE=2 SV=1[more]
DERL1_MOUSE4.740e-1728.22Derlin-1 OS=Mus musculus GN=Derl1 PE=2 SV=1[more]
DERL1_DROME1.056e-1631.89Derlin-1 OS=Drosophila melanogaster GN=CG10908 PE=... [more]
YFFH_SCHPO3.179e-1334.53Uncharacterized derlin-like protein C1687.17c OS=S... [more]
DERL1_CAEEL5.076e-1127.33Derlin-1 OS=Caenorhabditis elegans GN=cup-2 PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185880 ID=CN185880; Name=CN185880; organism=Citrus sinensis; type=EST; length=712bp
GATTTTTTGCTGCTGCTTATTGTCTCTTCGGAGCATACTACCTTTAAGGG
GAAAACGAAGATCTAAAGCTGCGCGTTTCGCTTGAATTAGCCATCTGAGT
CCGCAATGTCTTCACCTGCTGAGTATGGAGGTTGATAACAAATTTCTTTT
TCCTTGGAACTTTTTCAATCAATTTTGGGATTCGCCTTTTGATGATAGCG
AGATATGGAGTTAACCTGGAGAAGGGACCATTTGAAAGGCGTACAGCAGA
TTTTTTATGGATGATGATTTTTGGAGCCTTATCTCTGTTGGTGTTGTCAG
CCATCCCCATATTTCGATCTTATTTCCTAGGGATATCACTTGTTTTTATG
CTTGTCTATGTCTGGAGTAGAGAATTCCCAAATTCTCAGATCAATATATA
TGGCCTCGTGACACTTAAGGCATTTTATCTACCATGGGCTATGCTTGCTT
TGGACGTCATTTTTGGTTCACCCCTTGTACCAGACCTGCTGGGAATCATA
GCAGGACATCTGTATTACTTTTTGACTGTCTTACATCCACTTGCAACTGG
AAAGAACTTGTTGAAGACTCCAAAATGGGTACAAAAACTGGTGGCGAGGT
GGAGAATCGGAGCTCCAGCTATCAATCGTGCCCAGCCTGAAAGGACAACT
GGTGTGGCTTTCAGAGGAAGATCATATCGTTTAAGCGATTGATTATAATA
TGGCAACGTTCT
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