CN185880
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185880 vs. ExPASy Swiss-Prot
Match: DERL1_PONAB (Derlin-1 OS=Pongo abelii GN=DERL1 PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.629e-17 Identity = 58/202 (28.71%), Postives = 103/202 (50.99%), Query Frame = 3 Query: 123 VWRLITNFFFL----GTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPL-ATGKNLLKTPKWVQKLVARWRIGA------PAINRAQPERTTGVAFR--GRSYRLSD 689 +WR IT F+ GT + + + L + Y LE G F+ R AD+L+M++F + +++ + L I L+ ++YVW++ + ++ + KA YLPW +L + I G ++ +L+G + GHLY+FL +P+ G+N L TP+++ + + R G PA R ++ G G+ +RL D Sbjct: 52 IWRPITATFYFPVGPGTGFL-YLVNLYFLYHYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQ--LLMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRLGD 250
BLAST of CN185880 vs. ExPASy Swiss-Prot
Match: DERL1_MOUSE (Derlin-1 OS=Mus musculus GN=Derl1 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.740e-17 Identity = 57/202 (28.22%), Postives = 103/202 (50.99%), Query Frame = 3 Query: 123 VWRLITNFFFL----GTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPL-ATGKNLLKTPKWVQKLVARWRIGA------PAINRAQPERTTGVAFR--GRSYRLSD 689 +WR T F+ GT + + + L + +Y LE G F+ R AD+L+M++F + +++ + L I L+ ++YVW++ + ++ + KA YLPW +L + I G ++ +L+G + GHLY+FL +P+ G+N L TP+++ + + R G PA R ++ G G+ +RL D Sbjct: 52 IWRPFTATFYFPVGPGTGFL-YLVNLYFLYQYSTRLEAGAFDGRPADYLFMLLFNWICIVITGLAMDMQ--LLMIPLIMSVLYVWAQLNRDLIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRLGD 250
BLAST of CN185880 vs. ExPASy Swiss-Prot
Match: DERL1_DROME (Derlin-1 OS=Drosophila melanogaster GN=CG10908 PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.056e-16 Identity = 59/185 (31.89%), Postives = 91/185 (49.19%), Query Frame = 3 Query: 123 VWRLITNFFFLGTFS---INFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKN-LLKTPKWVQKLV-----ARWRIGAPAINRAQPERTT 650 +WR +T+ F S +F I I +Y LEK + R AD+L+++I A+ L IF YFL +LV + Y+W + + ++ + KA YLPW + A + IF L L+GI GH+YYF + G LL+TP+++++LV G P +RA P + T Sbjct: 51 LWRCMTSLFVFPISSNTAFHFLINCFFIVQYSSKLEKDQYSRSPADYLYLLIVSAV--LANIGGMIFNVYFLMDTLVLAITYIWCQLNKDVTVSFWFGTRFKAMYLPWVLAAFEFIFHFSLA-SLVGIFVGHVYYFFKFQYSQDLGGTPLLETPQFLKRLVPDVSGGFGGFGLPPESRAPPRQAT 232
BLAST of CN185880 vs. ExPASy Swiss-Prot
Match: YFFH_SCHPO (Uncharacterized derlin-like protein C1687.17c OS=Schizosaccharomyces pombe GN=SPAC1687.17c PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13 Identity = 48/139 (34.53%), Postives = 75/139 (53.96%), Query Frame = 3 Query: 126 WRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLV---LSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGS--PLVPDLLGIIAGHLYYFLT 527 WR IT F ++G F + + L + R+ LE+ +T FL ++ SLLV S +P SYF F ++Y+WS + P +I+I GL +KA Y+PW M+ L + PL+ DL+ + GH+Y+F+T Sbjct: 31 WRAITTFLYVGPFGLELILYLSFLLRFMSMLERSSPPPQTQSFLKTVLIVWFSLLVTSYFSYMPFAASYFS-----FTMLYIWSWKHPLYRISILGLFDVKAPYVPWVMVLLRWLRTGIFPLL-DLISALIGHVYFFVT 163
BLAST of CN185880 vs. ExPASy Swiss-Prot
Match: DERL1_CAEEL (Derlin-1 OS=Caenorhabditis elegans GN=cup-2 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11 Identity = 44/161 (27.33%), Postives = 81/161 (50.31%), Query Frame = 3 Query: 126 WRLITNFFFLGTFSINFGIRLLMIA----RYGVNLEKGPFERRTADFLWMMIFGALSLLVLS-AIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLV 593 WR +T + + G LM+ Y LE + R+AD+L+M+IF L A+ I YFL +V ++YVW + ++ ++ + + A YLPW + + + +L+GI+ GH Y+F+ + +P G +L+ TP+++ +L+ Sbjct: 52 WRPLTALIYYPV-TPQTGFHWLMMCYFLYNYSKALESETYRGRSADYLFMLIFNWFFCSGLCMALDI---YFLLEPMVISVLYVWCQVNKDTIVSFWFGMRFPARYLPWVLWGFNAVLRGGGTNELVGILVGHAYFFVALKYPDEYGVDLISTPEFLHRLI 208 The following BLAST results are available for this feature:
BLAST of CN185880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 25
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN185880 ID=CN185880; Name=CN185880; organism=Citrus sinensis; type=EST; length=712bpback to top |