DC887831

Overview
NameDC887831
Unique NameDC887831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC887831 vs. ExPASy Swiss-Prot
Match: 6DCS_SOYBN (NAD(P)H-dependent 6'-deoxychalcone synthase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.723e-11
Identity = 36/97 (37.11%), Postives = 58/97 (59.79%), Query Frame = -2 
Query:  225 SDVLKHPVVNMVAEKLGKTPAQVCLRWGLQMGNSLLPKSTNEVRIKENLDVFDWSIPEDLLAKFSGIEQARLLRGTSFVHETYGVFRTLEDLWDGEI 515
            ++V+++ V+  +AE  GK+ AQV LRW  + G + +PKS ++ R+ +NL +FDW++ E    K S I Q+RL+ G +           L DLWD +I
Sbjct:  227 NEVMENDVLKEIAEAHGKSIAQVSLRWLYEQGVTFVPKSYDKERMNQNLHIFDWALTEQDHHKISQISQSRLISGPTKPQ--------LADLWDDQI 315
[Close]
BLAST of DC887831 vs. ExPASy Swiss-Prot
Match: Y2408_MYCS2 (Uncharacterized oxidoreductase MSMEG_2408 OS=Mycobacterium smegmatis GN=MSMEG_2408 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.169e-11
Identity = 30/74 (40.54%), Postives = 46/74 (62.16%), Query Frame = -2 
Query:  297 KSDVLKHPVVNMVAEKLGKTPAQVCLRWGLQMGNSLLPKSTNEVRIKENLDVFDWSIPEDLLAKFSGIEQARLL 518
            +  +L  PV+  +AE+ GKTPAQV +RW +Q+GN ++PKS N  RI  N DVFD+ +    +   + +E  + L
Sbjct:  191 QGSLLADPVITGIAEQHGKTPAQVLIRWHIQLGNIVIPKSVNPERIASNFDVFDFELSGQDITSIASLETGKRL 264
The following BLAST results are available for this feature:
BLAST of DC887831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
6DCS_SOYBN4.723e-1137.11NAD(P)H-dependent 6'-deoxychalcone synthase OS=Gly... [more]
Y2408_MYCS26.169e-1140.54Uncharacterized oxidoreductase MSMEG_2408 OS=Mycob... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887831 EIC Citrus sinensis cDNA clone EIC0964 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887831 ID=DC887831; Name=DC887831; organism=Citrus sinensis; type=EST; length=528bp
TAGAACCCTTCGATGCTGTTAGCACATATCATGGCCTTCGATATAAGTAA
GTTTGGAACATTCAGAGTAAAAGCGAGATAAATCTGAAACTGCAAATTGT
TCTCCAAATGGTTTAAAATTATTAAGCACAAAGAATAACTGCGAAGTTAA
ACACAGTTTCAACATCCATCACGGCTATGCTTAAGACTTTTCCTTCTGAA
TACTGATTGTTGTCGTATTGCTCATATCTCACCGTCCCATAAATCTTCAA
GAGTCCTGAATACACCATAAGTTTCATGGACAAAGGAAGTCCCTCTTAGA
AGTCTAGCCTGCTCAATTCCTGAAAACTTGGCTAGTAAGTCCTCAGGTAT
GGACCAGTCAAAGACATCCAAGTTCTCCTTGATCCGTACTTCATTTGTGC
TCTTGGGAAGCAAACTGTTACCCATTTGCAGACCCCAGCGGAGACAAACT
TGTGCGGGAGTTTTGCCTAATTTCTCAGCAACCATATTCACAACTGGATG
CTTGAGGACATCACTCTTGATCCATGTT
back to top