CN185371

Overview
NameCN185371
Unique NameCN185371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: YBKC_SCHPO (Uncharacterized RNA-binding protein C1289.12 OS=Schizosaccharomyces pombe GN=SPBC1289.12 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.960e-12
Identity = 45/151 (29.80%), Postives = 71/151 (47.02%), Query Frame = 1
Query:   49 GRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGE-------NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPS 480
            G S    F+   +ES+   +  EM G  C  R + +    +          K TY ++ G  G         DPNNT ++V  L  ++T   L++ F  +GE+++ ++      G + FA R  AEQA++ +N   L G  I+LSW R PS
Sbjct:  109 GTSTSIAFIWLANESDIQNAQVEMQGAFCLKRSILVHSVKS---------DKNTYLSSPGFYGTPQPLNQFTDPNNTAVYVHQLPENITTQELRSYFLHFGEILYTQV--NNNSGRIVFAQRYFAEQAINEMNNFPLHGVRIQLSWARPPS 248          
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.645e-11
Identity = 47/167 (28.14%), Postives = 82/167 (49.10%), Query Frame = 1
Query:   10 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL---VHVKIPAG--KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSD 495
            ++   KV  D   GRSKGYGFV+F  E     ++ ++NG+L + + + +G    +             Q+   S+    P+ T ++V  L   +TDD LK  FG+YG++   V +K  +G  +  GFV F +   A  A+  +NG  LG   + +   +  S+++ +
Sbjct:  157 TILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRR-------------QDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEE 309          
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.645e-11
Identity = 43/167 (25.75%), Postives = 80/167 (47.90%), Query Frame = 1
Query:   10 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI-----PAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSD 495
            ++   KV  D ++G+SKGYGFV++ +E    +++ ++NG+L + + + +GP   ++               +     N    T ++V  L  S TDD LK  FG+YG++    +        K  GFV F N   A +A+  LNG +   +   +   +  S ++++
Sbjct:  149 NIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQ---------------ERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETE 299          
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.454e-11
Identity = 43/168 (25.60%), Postives = 80/168 (47.62%), Query Frame = 1
Query:   13 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI------PAGKRCGFVQFANRTCAEQALSVLNGTQLGG--QSIRLSWGRSPSNKQS 492
            ++  K+V D+ TG+S GYGFV + D  +  +++  +NG+   T+ +++  A    A+                       +  ++V GL  ++T   L+ +F QYG ++  +I         +  GF++F  R  AE+A+  LNG +  G  + I + +  +PS K S
Sbjct:   65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI---------------------RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSS 211          
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.454e-11
Identity = 43/168 (25.60%), Postives = 80/168 (47.62%), Query Frame = 1
Query:   13 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI------PAGKRCGFVQFANRTCAEQALSVLNGTQLGG--QSIRLSWGRSPSNKQS 492
            ++  K+V D+ TG+S GYGFV + D  +  +++  +NG+   T+ +++  A    A+                       +  ++V GL  ++T   L+ +F QYG ++  +I         +  GF++F  R  AE+A+  LNG +  G  + I + +  +PS K S
Sbjct:   77 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI---------------------RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSS 223          
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.454e-11
Identity = 43/168 (25.60%), Postives = 80/168 (47.62%), Query Frame = 1
Query:   13 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI------PAGKRCGFVQFANRTCAEQALSVLNGTQLGG--QSIRLSWGRSPSNKQS 492
            ++  K+V D+ TG+S GYGFV + D  +  +++  +NG+   T+ +++  A    A+                       +  ++V GL  ++T   L+ +F QYG ++  +I         +  GF++F  R  AE+A+  LNG +  G  + I + +  +PS K S
Sbjct:   72 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI---------------------RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSS 218          
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.512e-11
Identity = 44/159 (27.67%), Postives = 82/159 (51.57%), Query Frame = 1
Query:   10 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI--GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI------PAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLS 462
            +V+  +V+ D+ TGRS+G+GFV    + E   +  + NG     R +R+  GP   K+  +  + + ++++      G  D +N  ++VG L   V  D L+T+F + G++V  K+         +  GFV +++      A+  L+G  L G++IR+S
Sbjct:  112 NVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFR-ENSSFRGGSRGGGSFDSSN-RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 268          
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 44/163 (26.99%), Postives = 81/163 (49.69%), Query Frame = 1
Query:   10 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI--GPAATKKAATGQQYQKATYQNT----QGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI------PAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLS 462
            +V+  +V+ D+ TGRS+G+GFV     SE   +  + NG     RP+R+  GP   K+     +  ++++ ++     G  G    +   ++VG L   V D  L+++F + G++V  ++         K  GFV + +    + A+  L+G  L G+ IR+S
Sbjct:  116 NVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVS 278          
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: YOCE_SCHPO (Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces pombe GN=SPBC4F6.14 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.696e-11
Identity = 48/160 (30.00%), Postives = 79/160 (49.38%), Query Frame = 1
Query:   13 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSV-TDDILKTVFGQYGELVHVKIP---AGKRCG--FVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 474
            +K A VVT+  TG ++GYGFV F    +  R+  E+       R +R+  A  +K +     +  T QN    +     N   + +  L  S+     L+  F ++G++  +KIP    G+ CG  FV   +R  AE+A++ LNGT++ G+ I + W  S
Sbjct:   31 IKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKRS-----EVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVS 185          
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.696e-11
Identity = 44/159 (27.67%), Postives = 80/159 (50.31%), Query Frame = 1
Query:   10 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI--GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI------PAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLS 462
            +V+  +V+ D+ TGRS+G+GFV    + E   +  + NG     R +R+  GP   K+       + ++++      G  D +N  ++VG L   V  D L+T+F + G++V  K+         +  GFV +++      A+  L+G  L G++IR+S
Sbjct:  112 NVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKR-------ENSSFRGGSRGGGSFDSSN-RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 262          
The following BLAST results are available for this feature:
BLAST of CN185371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
YBKC_SCHPO6.960e-1229.80Uncharacterized RNA-binding protein C1289.12 OS=Sc... [more]
PABP5_ARATH2.645e-1128.14Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PABP2_ARATH2.645e-1125.75Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
ELAV4_RAT3.454e-1125.60ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4... [more]
ELAV4_MOUSE3.454e-1125.60ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1... [more]
ELAV4_HUMAN3.454e-1125.60ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1... [more]
ROC1_NICPL4.512e-1127.6730 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_ARATH5.892e-1126.99Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
YOCE_SCHPO7.696e-1130.00Uncharacterized RNA-binding protein C4F6.14 OS=Sch... [more]
ROC1_NICSY7.696e-1127.6729 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185371 ID=CN185371; Name=CN185371; organism=Citrus sinensis; type=EST; length=778bp
GAGGACTCGTCAGTGAAGGGTGCTAAAGTGGTCACTGATAGAACCACTGG
ACGCTCTAAGGGGTATGGTTTTGTGAGATTTGGGGATGAAAGTGAACAAT
TGCGTTCCATGACCGAAATGAATGGCGTGCTCTGCTCTACTAGACCTATG
CGGATTGGGCCAGCTGCCACCAAGAAAGCTGCCACTGGCCAGCAATATCA
GAAAGCTACTTATCAAAATACCCAAGGAAGCCAGGGCGAGAATGATCCAA
ATAATACAACAATATTTGTTGGGGGTTTGGATCCTAGTGTTACAGATGAC
ATTTTGAAAACAGTTTTTGGTCAATATGGTGAGTTAGTTCATGTGAAAAT
ACCAGCGGGCAAGCGCTGCGGGTTTGTTCAGTTTGCTAACAGAACTTGTG
CGGAGCAAGCACTATCAGTTTTGAATGGCACCCAATTAGGAGGACAAAGC
ATTAGACTGTCATGGGGGCGTAGTCCTTCAAACAAACAGTCGGATCAGGC
CCAATGGAACGGTGGTGGATACTATGGTTTTGCACAAGGATACGAGGCAT
ATGGATATGCGCCTCCTACCCAAGACCCGAACATGTACTATGGGGGCTTT
CCTGGATATGGGACTTACCAACAGCCAGGGTCTTACCAACAGCCACAGCA
GTGATGTATTTATGGTGCAAGTCTTGAAGCTGGGGTAGCCATAATCAAAT
TGAATTTTAGGAAGGTATTTGTTGTTTGGTTGTTGAGGATGATGTGAGTG
CTTGGAGATAGTTTATTGATTTTTTTTT
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