CN185371
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 135.961 bits (341), Expect = 2.301e-31 Identity = 74/165 (44.85%), Postives = 97/165 (58.79%), Query Frame = 1 Query: 7 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA---------TGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 474 +S K AK++TD T S+GYGFVRF DE++Q ++ EM G +C RP+R+G A K A Y Q D N+T+FVGGL V+++ LK +F +GE+V+VKIP GK CGFVQF NR AE A++ L G LG IRLSWGR+ Sbjct: 211 NSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.633e-27 Identity = 63/162 (38.89%), Postives = 95/162 (58.64%), Query Frame = 1 Query: 10 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAAT-----GQQYQKATYQNTQGSQG--ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 474 S AK++ D TG S+ YGFVRF E EQ ++ M G LC RP+RI A+ K A+ + N Q +Q DP NTT+FVGGL ++++ L+ F +G ++++KIP GK CGFVQ++ ++ AE+A++ + G +G IRL+WG + Sbjct: 208 SCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2) HSP 1 Score: 120.168 bits (300), Expect = 1.307e-26 Identity = 68/198 (34.34%), Postives = 102/198 (51.52%), Query Frame = 1 Query: 7 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK---AATGQQYQKATYQNTQG-------------SQGEN--------------------------DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 474 +S AK+V D+ TG SKGYGFV+F + EQ +++EM GV + R +++GP + ++ + + ++ N + S G N DPNNTT+F+GGL VT+D L+ F +G +V+VKIP GK CGFVQ+ +R AE A++ + G + +RLSWGRS Sbjct: 188 ASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRS 385
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 3.558e-24 Identity = 74/240 (30.83%), Postives = 109/240 (45.42%), Query Frame = 1 Query: 10 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK-------------KAATGQQYQKATYQNTQG-------------------------------SQG----------------ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQAQWNGGGYYGFAQGYEA 549 SVK +V+TD TG S+ +GFVRFGDE E+ R++ EM+G R +R+ A + + QQ+Q+ ++ G ++G DP NTT+FVGGL P T+ L+++F +G +++V+IP GK CGFV+F R AE ++ L G +GG IRLSWGR S+ + G Y + G A Sbjct: 218 SVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYATPRNNMMLQLQEQQQQQQQLQQQHQQLDQEDNNGPLLIKTANNLIQNNSNMLPLNALHNAPPMHLNEGGISNMRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGRPSSSNAKTNSTIMGASQYMSSNGLRA 457
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 7.678e-19 Identity = 49/171 (28.65%), Postives = 89/171 (52.05%), Query Frame = 1 Query: 13 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQ-GENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQAQWNGGGY 522 + A+VV D TG+SKGYGFV F ++ + ++ +M G R +R A K A Y+ T Q + ++ PNN T++ GG+ +T+ +++ F +G+++ +++ K FV+F++ A A+ +NGT + G ++ WG+ + + Q N GY Sbjct: 132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGY 302
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.710e-18 Identity = 53/187 (28.34%), Postives = 91/187 (48.66%), Query Frame = 1 Query: 13 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQ-NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSN-----KQSDQAQW-NGGGYYGFAQGYEAY 552 + A+VV D TG+SKGYGFV F ++ + ++ M G R +R A K A + T Q + ++ P N T++ GG+ +TD +++ F +G+++ +++ K FV+F+ A A+ +NGT + G ++ WG+ + +Q D +QW YG Q Y Y Sbjct: 123 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQY 309
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.234e-18 Identity = 53/187 (28.34%), Postives = 91/187 (48.66%), Query Frame = 1 Query: 13 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQ-NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSN-----KQSDQAQW-NGGGYYGFAQGYEAY 552 + A+VV D TG+SKGYGFV F ++ + ++ M G R +R A K A + T Q + ++ P N T++ GG+ +TD +++ F +G+++ +++ K FV+F+ A A+ +NGT + G ++ WG+ + +Q D +QW YG Q Y Y Sbjct: 140 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQY 326
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 92.0485 bits (227), Expect = 3.810e-18 Identity = 52/185 (28.11%), Postives = 94/185 (50.81%), Query Frame = 1 Query: 13 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQ-GENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQAQWNGGGY-YGFAQGYEAYGYA 561 + A+VV D TG+SKGYGFV F ++ + ++ +M G R +R A K A Y+ T Q + ++ P+N T++ GG+ +T+ +++ F +G+++ +++ K FV+F + A A+ +NGT + G ++ WG+ + + Q N GY + Q + YG A Sbjct: 132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWGQWYGNA 316
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.957e-14 Identity = 53/182 (29.12%), Postives = 90/182 (49.45%), Query Frame = 1 Query: 13 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA------GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQAQWNGGGYYGFAQG 540 V GA+V+ +R T RS+GYG+V F ++S +++ EM G RP+ + +K A + +K + +T + T+F+G L + D + +F ++GE+V V+IP K G+VQF+N A++AL L G + + +RL + N + G G G +G Sbjct: 194 VIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKK--FGDTPSEPSD------TLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPNNDGGRGGSRGFGGRGGGRG 367
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: SXL_MEGSC (Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3) HSP 1 Score: 72.4034 bits (176), Expect = 3.124e-12 Identity = 46/144 (31.94%), Postives = 74/144 (51.39%), Query Frame = 1 Query: 13 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCG------FVQFANRTCAEQALSVLN 426 + +++ D TG S GYGFV FG E++ LR++ +NG+ + R RI K ++ G Q +T ++V L S+TD+ L+T+FG+YG++V I K G F++F R A++A+S LN Sbjct: 104 INTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGI--TVRNKRI---------------KVSFARPGGEQ----LRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISALN 226 The following BLAST results are available for this feature:
BLAST of CN185371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185371 ID=CN185371; Name=CN185371; organism=Citrus sinensis; type=EST; length=778bpback to top |