CN185371
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: YBKC_SCHPO (Uncharacterized RNA-binding protein C1289.12 OS=Schizosaccharomyces pombe GN=SPBC1289.12 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.960e-12 Identity = 45/151 (29.80%), Postives = 71/151 (47.02%), Query Frame = 1 Query: 49 GRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGE-------NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPS 480 G S F+ +ES+ + EM G C R + + + K TY ++ G G DPNNT ++V L ++T L++ F +GE+++ ++ G + FA R AEQA++ +N L G I+LSW R PS Sbjct: 109 GTSTSIAFIWLANESDIQNAQVEMQGAFCLKRSILVHSVKS---------DKNTYLSSPGFYGTPQPLNQFTDPNNTAVYVHQLPENITTQELRSYFLHFGEILYTQV--NNNSGRIVFAQRYFAEQAINEMNNFPLHGVRIQLSWARPPS 248
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.645e-11 Identity = 47/167 (28.14%), Postives = 82/167 (49.10%), Query Frame = 1 Query: 10 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL---VHVKIPAG--KRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSD 495 ++ KV D GRSKGYGFV+F E ++ ++NG+L + + + +G + Q+ S+ P+ T ++V L +TDD LK FG+YG++ V +K +G + GFV F + A A+ +NG LG + + + S+++ + Sbjct: 157 TILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRR-------------QDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEE 309
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.645e-11 Identity = 43/167 (25.75%), Postives = 80/167 (47.90%), Query Frame = 1 Query: 10 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI-----PAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSD 495 ++ KV D ++G+SKGYGFV++ +E +++ ++NG+L + + + +GP ++ + N T ++V L S TDD LK FG+YG++ + K GFV F N A +A+ LNG + + + + S ++++ Sbjct: 149 NIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQ---------------ERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETE 299
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.454e-11 Identity = 43/168 (25.60%), Postives = 80/168 (47.62%), Query Frame = 1 Query: 13 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI------PAGKRCGFVQFANRTCAEQALSVLNGTQLGG--QSIRLSWGRSPSNKQS 492 ++ K+V D+ TG+S GYGFV + D + +++ +NG+ T+ +++ A A+ + ++V GL ++T L+ +F QYG ++ +I + GF++F R AE+A+ LNG + G + I + + +PS K S Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI---------------------RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSS 211
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.454e-11 Identity = 43/168 (25.60%), Postives = 80/168 (47.62%), Query Frame = 1 Query: 13 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI------PAGKRCGFVQFANRTCAEQALSVLNGTQLGG--QSIRLSWGRSPSNKQS 492 ++ K+V D+ TG+S GYGFV + D + +++ +NG+ T+ +++ A A+ + ++V GL ++T L+ +F QYG ++ +I + GF++F R AE+A+ LNG + G + I + + +PS K S Sbjct: 77 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI---------------------RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSS 223
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 3.454e-11 Identity = 43/168 (25.60%), Postives = 80/168 (47.62%), Query Frame = 1 Query: 13 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI------PAGKRCGFVQFANRTCAEQALSVLNGTQLGG--QSIRLSWGRSPSNKQS 492 ++ K+V D+ TG+S GYGFV + D + +++ +NG+ T+ +++ A A+ + ++V GL ++T L+ +F QYG ++ +I + GF++F R AE+A+ LNG + G + I + + +PS K S Sbjct: 72 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI---------------------RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSS 218
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.512e-11 Identity = 44/159 (27.67%), Postives = 82/159 (51.57%), Query Frame = 1 Query: 10 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI--GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI------PAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLS 462 +V+ +V+ D+ TGRS+G+GFV + E + + NG R +R+ GP K+ + + + ++++ G D +N ++VG L V D L+T+F + G++V K+ + GFV +++ A+ L+G L G++IR+S Sbjct: 112 NVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFR-ENSSFRGGSRGGGSFDSSN-RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 268
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11 Identity = 44/163 (26.99%), Postives = 81/163 (49.69%), Query Frame = 1 Query: 10 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI--GPAATKKAATGQQYQKATYQNT----QGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI------PAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLS 462 +V+ +V+ D+ TGRS+G+GFV SE + + NG RP+R+ GP K+ + ++++ ++ G G + ++VG L V D L+++F + G++V ++ K GFV + + + A+ L+G L G+ IR+S Sbjct: 116 NVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVS 278
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: YOCE_SCHPO (Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces pombe GN=SPBC4F6.14 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.696e-11 Identity = 48/160 (30.00%), Postives = 79/160 (49.38%), Query Frame = 1 Query: 13 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSV-TDDILKTVFGQYGELVHVKIP---AGKRCG--FVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 474 +K A VVT+ TG ++GYGFV F + R+ E+ R +R+ A +K + + T QN + N + + L S+ L+ F ++G++ +KIP G+ CG FV +R AE+A++ LNGT++ G+ I + W S Sbjct: 31 IKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKRS-----EVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVS 185
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.696e-11 Identity = 44/159 (27.67%), Postives = 80/159 (50.31%), Query Frame = 1 Query: 10 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI--GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI------PAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLS 462 +V+ +V+ D+ TGRS+G+GFV + E + + NG R +R+ GP K+ + ++++ G D +N ++VG L V D L+T+F + G++V K+ + GFV +++ A+ L+G L G++IR+S Sbjct: 112 NVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKR-------ENSSFRGGSRGGGSFDSSN-RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 262 The following BLAST results are available for this feature:
BLAST of CN185371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185371 ID=CN185371; Name=CN185371; organism=Citrus sinensis; type=EST; length=778bpback to top |