CN185079

Overview
NameCN185079
Unique NameCN185079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NFYB_DICDI (Nuclear transcription factor Y subunit beta OS=Dictyostelium discoideum GN=nfyB PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.203e-38
Identity = 78/115 (67.83%), Postives = 96/115 (83.48%), Query Frame = 1
Query:  118 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREME--GDTKGNAKGGDASAKKDGQP 456
            REQDRYLPIANI RIMKKALP N K+AKDAKETVQ+CVSEFISFITSEASDKCQ+EKRKTING+D++ AM +LGFE+Y++PLK+YL +YRE E   + K + K  ++S+  +  P
Sbjct:   47 REQDRYLPIANIIRIMKKALPNNAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRKTINGEDIIAAMVSLGFENYVEPLKVYLLKYRETEKNSNNKRSPKKSESSSPPESPP 161          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NFYB_RAT (Nuclear transcription factor Y subunit beta OS=Rattus norvegicus GN=Nfyb PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.053e-37
Identity = 82/147 (55.78%), Postives = 102/147 (69.39%), Query Frame = 1
Query:   82 HESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKDGQPNPNTQLAHQGSFPQGVNYGNSQ 522
            HE    S  S  REQD YLPIAN++RIMK A+P  GKIAKDAKE VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK+YL ++RE     KG    G A +  DG     T+ A     P G+   + Q
Sbjct:   42 HEDTNGSKES-FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREA---MKGEKGIGGAVSATDGLSEELTEEAFTNQLPAGLITADGQ 184          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NFYB_MOUSE (Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.053e-37
Identity = 82/147 (55.78%), Postives = 102/147 (69.39%), Query Frame = 1
Query:   82 HESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKDGQPNPNTQLAHQGSFPQGVNYGNSQ 522
            HE    S  S  REQD YLPIAN++RIMK A+P  GKIAKDAKE VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK+YL ++RE     KG    G A +  DG     T+ A     P G+   + Q
Sbjct:   42 HEDTNGSKES-FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREA---MKGEKGIGGAVSATDGLSEELTEEAFTNQLPAGLITADGQ 184          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NFYB_HUMAN (Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 8.619e-37
Identity = 81/141 (57.45%), Postives = 99/141 (70.21%), Query Frame = 1
Query:   82 HESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKDGQPNPNTQLAHQGSFPQGV 504
            HE    S  S  REQD YLPIAN++RIMK A+P  GKIAKDAKE VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK+YL ++RE     KG    G A    DG     T+ A     P G+
Sbjct:   42 HEDTNGSKES-FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREA---MKGEKGIGGAVTATDGLSEELTEEAFTNQLPAGL 178          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NFYB_BOVIN (Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.126e-36
Identity = 82/147 (55.78%), Postives = 100/147 (68.03%), Query Frame = 1
Query:   82 HESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKDGQPNPNTQLAHQGSFPQGVNYGNSQ 522
            HE    S  S  REQD YLPIAN++RIMK A+P  GKIAKDAKE VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK+YL ++RE     KG    G A    DG     T  A     P G+   + Q
Sbjct:   42 HEDTNGSKES-FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREA---MKGEKGIGGAVTATDGLSEELTDEAFTNQLPAGLITADGQ 184          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NFYB5_ARATH (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.920e-36
Identity = 74/119 (62.18%), Postives = 90/119 (75.63%), Query Frame = 1
Query:   85 ESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKG-NAKGGDASA 438
            E  +Q     V+EQDR LPIAN+ RIMK  LPAN K++K+AKET+QECVSEFISF+T EASDKC +EKRKT+NGDD+ WAMA LGF+DY   LK YL RYR +EG+    + KGG  S+
Sbjct:   39 EDQQQEESMMVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHHGKGGPKSS 157          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NFYB_HORSE (Nuclear transcription factor Y subunit beta OS=Equus caballus GN=NFYB PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.508e-36
Identity = 81/147 (55.10%), Postives = 100/147 (68.03%), Query Frame = 1
Query:   82 HESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKDGQPNPNTQLAHQGSFPQGVNYGNSQ 522
            HE    S  S  REQD YLPIAN++RIMK A+P  GKIAKDAKE VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK+YL ++RE     KG    G A    DG      + A     P G+   + Q
Sbjct:   42 HEDTNGSKES-FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREA---MKGEKGIGGAVTATDGLSEELAEEAFTNQLPAGLITADGQ 184          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NFYB_CHICK (Nuclear transcription factor Y subunit beta OS=Gallus gallus GN=NFYB PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 3.275e-36
Identity = 80/141 (56.74%), Postives = 98/141 (69.50%), Query Frame = 1
Query:   82 HESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKDGQPNPNTQLAHQGSFPQGV 504
            HE    S  S  REQD YLPIAN++RIMK A+P  GKIAKDAKE VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK+YL ++RE     KG    G      DG     T+ A     P G+
Sbjct:   40 HEDTNGSKES-FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREA---MKGEKGIGGTVTTGDGLSEELTEEAFTNQLPAGL 176          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NFYB6_ARATH (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 4.729e-35
Identity = 66/107 (61.68%), Postives = 89/107 (83.18%), Query Frame = 1
Query:  115 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDAS 435
            VREQDR++PIAN+ RIM++ LPA+ KI+ D+KET+QECVSE+ISFIT EA+++CQRE+RKTI  +D+LWAM+ LGF+DYI+PL +YL RYRE+EG+   +   G  S
Sbjct:   56 VREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGERGVSCSAGSVS 162          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NFYB_PETMA (Nuclear transcription factor Y subunit beta OS=Petromyzon marinus GN=NFYB PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.067e-35
Identity = 71/101 (70.30%), Postives = 90/101 (89.11%), Query Frame = 1
Query:  118 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYRE-MEGDTKGNA 417
            REQD YLPIAN++RIMK ++P++GKIAKDAKE VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL +YRE M+G+   NA
Sbjct:   54 REQDIYLPIANVARIMKTSIPSSGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKQYLQKYRESMKGEKGINA 154          
The following BLAST results are available for this feature:
BLAST of CN185079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
NFYB_DICDI1.203e-3867.83Nuclear transcription factor Y subunit beta OS=Dic... [more]
NFYB_RAT5.053e-3755.78Nuclear transcription factor Y subunit beta OS=Rat... [more]
NFYB_MOUSE5.053e-3755.78Nuclear transcription factor Y subunit beta OS=Mus... [more]
NFYB_HUMAN8.619e-3757.45Nuclear transcription factor Y subunit beta OS=Hom... [more]
NFYB_BOVIN1.126e-3655.78Nuclear transcription factor Y subunit beta OS=Bos... [more]
NFYB5_ARATH1.920e-3662.18Nuclear transcription factor Y subunit B-5 OS=Arab... [more]
NFYB_HORSE2.508e-3655.10Nuclear transcription factor Y subunit beta OS=Equ... [more]
NFYB_CHICK3.275e-3656.74Nuclear transcription factor Y subunit beta OS=Gal... [more]
NFYB6_ARATH4.729e-3561.68Nuclear transcription factor Y subunit B-6 OS=Arab... [more]
NFYB_PETMA8.067e-3570.30Nuclear transcription factor Y subunit beta OS=Pet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006L05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006L05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185079 ID=CN185079; Name=CN185079; organism=Citrus sinensis; type=EST; length=801bp
GAGGCTCAACACCTCATCAGCTAGGGTTTTCTTTCATTTGAGATGGCGGC
CGAGGCACCGGCGAGTCCAGGAGGCGGCAGCCACGAGAGCGGCGAGCAGA
GTCCGAGATCCAACGTCCGCGAACAAGACAGGTACCTTCCGATCGCTAAT
ATTAGCCGGATCATGAAGAAGGCGCTCCCTGCTAACGGAAAAATCGCTAA
GGACGCTAAAGAGACTGTCCAGGAGTGCGTTTCTGAGTTCATCAGCTTTA
TCACCAGCGAGGCGAGTGATAAGTGTCAGAGAGAGAAGAGAAAGACGATT
AACGGTGATGATTTGCTTTGGGCTATGGCAACGTTAGGCTTTGAGGATTA
TATTGATCCGCTGAAAATTTACCTAACCAGATACAGAGAGATGGAGGGTG
ACACCAAGGGTAATGCAAAAGGTGGAGATGCATCTGCTAAGAAAGATGGT
CAACCAAACCCAAACACTCAGCTTGCTCATCAAGGCTCCTTCCCGCAAGG
TGTTAACTATGGGAATTCTCAAGGAAGCATATACAATTACCAACTAGGGG
ATTTCAGTAGCATATGATACAGATACTTCTTGACATGTTATGAAGAACTA
CTGACCAGTCATGATCAATACTGTTCAGTTTGCTGTTACAGAAAAGCATC
AGTCCTGTTTGTCTGGGATTTGATGAAAAAAATTGTTTATTTCCGACTTT
ATGTTAGTTTGTTAATGTTATTTGTTTTTGCATTAAAGTAACATTGTATA
GCGGATATTCAGCTATTGCTAGTTATAAAGATGCTCTTCAACTATTAATC
T
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