CN185079

Overview
NameCN185079
Unique NameCN185079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NFYB9_ARATH (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.067e-35
Identity = 65/112 (58.04%), Postives = 93/112 (83.04%), Query Frame = 1
Query:   94 EQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGD 429
            +Q P    REQD+Y+PIAN+ RIM+K LP++ KI+ DAKET+QECVSE+ISF+T EA+++CQRE+RKTI  +D+LWAM+ LGF++Y+DPL +++ RYRE+E D +G+A  G+
Sbjct:   20 QQQPPCVAREQDQYMPIANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIETD-RGSALRGE 130          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NFYB4_ARATH (Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana GN=NFYB4 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.507e-30
Identity = 64/137 (46.72%), Postives = 97/137 (70.80%), Query Frame = 1
Query:  121 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKDGQPNPNTQLAHQGS-FPQGVNYGNSQGS 528
            ++DR LPIAN+ R+MK+ LP+N KI+K+AK+TVQEC +EFISF+T EAS+KC RE RKT+NGDD+ WA++TLG ++Y D +  +L +YRE E +   + KG + S   + + N  + + +Q + F + V  G+S  +
Sbjct:    3 DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTVNGDDIWWALSTLGLDNYADAVGRHLHKYREAERERTEHNKGSNDSG-NEKETNTRSDVQNQSTKFIRVVEKGSSSSA 138          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: HAP3_YEAST (Transcriptional activator HAP3 OS=Saccharomyces cerevisiae GN=HAP3 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.813e-30
Identity = 60/103 (58.25%), Postives = 81/103 (78.64%), Query Frame = 1
Query:   88 SGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREME 396
            SG     S +REQDR+LPI N++R+MK  LP + K++KDAKE +QECVSE ISF+TSEASD+C  +KRKTING+D+L ++  LGFE+Y + LKIYL +YR+ +
Sbjct:   26 SGSLQQISTLREQDRWLPINNVARLMKNTLPPSAKVSKDAKECMQECVSELISFVTSEASDRCAADKRKTINGEDILISLHALGFENYAEVLKIYLAKYRQQQ 128          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: HAP3_KLULA (Transcriptional activator HAP3 OS=Kluyveromyces lactis GN=HAP3 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.513e-28
Identity = 57/96 (59.38%), Postives = 77/96 (80.21%), Query Frame = 1
Query:  109 SNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREME 396
            + + EQDR+LPI N++R+MK  LPA  K++KDAKE +QECVSEFISF+TSEA D+C   KRKTING+D+L ++  LGFE+Y + LKIYL +YR+ +
Sbjct:   18 NELAEQDRWLPINNVARLMKNTLPATTKVSKDAKECMQECVSEFISFVTSEACDRCTSGKRKTINGEDILLSLHALGFENYAEVLKIYLAKYRQQQ 113          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: HAP3_SCHPO (Transcriptional activator hap3 OS=Schizosaccharomyces pombe GN=hap3 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.629e-27
Identity = 57/87 (65.52%), Postives = 74/87 (85.06%), Query Frame = 1
Query:  136 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREME 396
            LPIAN++RIMK ALP N KI+K+AK+ VQ+CVSEFISF+T EAS++C +EKRKTI G+D+L A+ TLGFE+Y + LKI LT+YRE +
Sbjct:   12 LPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGEDVLLALNTLGFENYAEVLKISLTKYREQQ 98          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NFYB_XENLA (Nuclear transcription factor Y subunit beta (Fragment) OS=Xenopus laevis GN=nfyb PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.929e-20
Identity = 56/122 (45.90%), Postives = 76/122 (62.30%), Query Frame = 1
Query:  217 VQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYRE-MEGD-------TKGNAKGGDASAKKDGQPNPNTQLAHQGSFPQGVNYGNSQGSIYNYQLGDFS 558
            VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK+YL ++RE M+G+       T G+  G D + +      P   +   G     + Y  S   I   Q   FS
Sbjct:    1 VQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGTVTTGDGLGEDLAEEPFTSQIPAGLITTDGQQQNVMVYTTSYQQISGVQQIQFS 122          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NFYB1_ORYSJ (Nuclear transcription factor Y subunit B-1 OS=Oryza sativa subsp. japonica GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.187e-15
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 1
Query:  136 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREME 396
            LP+AN+ R++KK LP   KI   AK    +C  EF+ F+  EAS+K + E R+T+  +D L +   LGF+ Y+DP+  Y+  YRE E
Sbjct:   34 LPMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDYLGSFGDLGFDRYVDPMDAYIHGYREFE 120          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: DPOE3_MOUSE (DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.298e-12
Identity = 42/118 (35.59%), Postives = 64/118 (54.24%), Query Frame = 1
Query:  118 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKDGQPNPNTQ 471
            R +D  LP A I+RI+K+ALP    I+K+A+  +    S F+ + TS A++   + KRKT+N  D+L AM  + F+ +I PLK  L  YR    D KG  +  +   K   + +   Q
Sbjct:    4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFITPLKEALEAYRR---DEKGKKEASEQKKKDKDKKDSEEQ 118          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: DPOE3_RAT (DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.625e-12
Identity = 41/111 (36.94%), Postives = 64/111 (57.66%), Query Frame = 1
Query:  118 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRY-REMEGDTKGNAKGGDASAKKD 447
            R +D  LP A I+RI+K+ALP    I+K+A+  +    S F+ + TS A++   + KRKT+N  D+L AM  + F+ ++ PLK  L  Y RE +G  + + +      KKD
Sbjct:    4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKKD 114          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NC2B_DICDI (Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.253e-11
Identity = 39/124 (31.45%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  112 NVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKDGQPNPNTQLAHQ 483
            N +E +  LP A +S+++K+ LP + K + + ++ + EC  EFI  I+SEA+D C RE+++TI  + ++ A+  LGF DY   +     +++ +E  TK       +S K +    P  QL  +
Sbjct:    5 NDKEDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRTIAAEHVIKALTELGFSDYTQKVSDVYDKHK-LEVSTKSK-----SSKKFENLGKPTEQLIRE 122          
The following BLAST results are available for this feature:
BLAST of CN185079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
NFYB9_ARATH8.067e-3558.04Nuclear transcription factor Y subunit B-9 OS=Arab... [more]
NFYB4_ARATH3.507e-3046.72Nuclear transcription factor Y subunit B-4 OS=Arab... [more]
HAP3_YEAST7.813e-3058.25Transcriptional activator HAP3 OS=Saccharomyces ce... [more]
HAP3_KLULA2.513e-2859.38Transcriptional activator HAP3 OS=Kluyveromyces la... [more]
HAP3_SCHPO3.629e-2765.52Transcriptional activator hap3 OS=Schizosaccharomy... [more]
NFYB_XENLA1.929e-2045.90Nuclear transcription factor Y subunit beta (Fragm... [more]
NFYB1_ORYSJ3.187e-1542.53Nuclear transcription factor Y subunit B-1 OS=Oryz... [more]
DPOE3_MOUSE3.298e-1235.59DNA polymerase epsilon subunit 3 OS=Mus musculus G... [more]
DPOE3_RAT5.625e-1236.94DNA polymerase epsilon subunit 3 OS=Rattus norvegi... [more]
NC2B_DICDI1.253e-1131.45Protein Dr1 homolog OS=Dictyostelium discoideum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006L05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006L05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185079 ID=CN185079; Name=CN185079; organism=Citrus sinensis; type=EST; length=801bp
GAGGCTCAACACCTCATCAGCTAGGGTTTTCTTTCATTTGAGATGGCGGC
CGAGGCACCGGCGAGTCCAGGAGGCGGCAGCCACGAGAGCGGCGAGCAGA
GTCCGAGATCCAACGTCCGCGAACAAGACAGGTACCTTCCGATCGCTAAT
ATTAGCCGGATCATGAAGAAGGCGCTCCCTGCTAACGGAAAAATCGCTAA
GGACGCTAAAGAGACTGTCCAGGAGTGCGTTTCTGAGTTCATCAGCTTTA
TCACCAGCGAGGCGAGTGATAAGTGTCAGAGAGAGAAGAGAAAGACGATT
AACGGTGATGATTTGCTTTGGGCTATGGCAACGTTAGGCTTTGAGGATTA
TATTGATCCGCTGAAAATTTACCTAACCAGATACAGAGAGATGGAGGGTG
ACACCAAGGGTAATGCAAAAGGTGGAGATGCATCTGCTAAGAAAGATGGT
CAACCAAACCCAAACACTCAGCTTGCTCATCAAGGCTCCTTCCCGCAAGG
TGTTAACTATGGGAATTCTCAAGGAAGCATATACAATTACCAACTAGGGG
ATTTCAGTAGCATATGATACAGATACTTCTTGACATGTTATGAAGAACTA
CTGACCAGTCATGATCAATACTGTTCAGTTTGCTGTTACAGAAAAGCATC
AGTCCTGTTTGTCTGGGATTTGATGAAAAAAATTGTTTATTTCCGACTTT
ATGTTAGTTTGTTAATGTTATTTGTTTTTGCATTAAAGTAACATTGTATA
GCGGATATTCAGCTATTGCTAGTTATAAAGATGCTCTTCAACTATTAATC
T
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