CN185079

Overview
NameCN185079
Unique NameCN185079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: DPOE3_PONAB (DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.253e-11
Identity = 41/114 (35.96%), Postives = 62/114 (54.39%), Query Frame = 1
Query:  118 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTK--GNAKGGDASAKKDGQ 453
            R +D  LP A I+RI+K+ALP    I+K+A+  +    S F+ + TS A++   + KRKT+N  D+L AM  + F+ ++ PLK  L  YR  +   K     K  D   K D +
Sbjct:    4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKKTDSE 117          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: DPOE3_HUMAN (DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.253e-11
Identity = 41/114 (35.96%), Postives = 62/114 (54.39%), Query Frame = 1
Query:  118 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTK--GNAKGGDASAKKDGQ 453
            R +D  LP A I+RI+K+ALP    I+K+A+  +    S F+ + TS A++   + KRKT+N  D+L AM  + F+ ++ PLK  L  YR  +   K     K  D   K D +
Sbjct:    4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKKTDSE 117          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: DPOE3_BOVIN (DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.253e-11
Identity = 41/114 (35.96%), Postives = 62/114 (54.39%), Query Frame = 1
Query:  118 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTK--GNAKGGDASAKKDGQ 453
            R +D  LP A I+RI+K+ALP    I+K+A+  +    S F+ + TS A++   + KRKT+N  D+L AM  + F+ ++ PLK  L  YR  +   K     K  D   K D +
Sbjct:    4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKKTDSE 117          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NC2B_ARATH (Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.637e-11
Identity = 34/101 (33.66%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  121 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYR-EMEGDTKGNAK 420
            ++D  LP A +++I+K+ LP + ++A+DA++ + EC  EFI+ ++SE++D C +E ++TI  + +L A+  LGF +YI+ +     +++ E   DT+ + K
Sbjct:   11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQRSVK 111          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NC2B_RAT (Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.123e-11
Identity = 33/86 (38.37%), Postives = 58/86 (67.44%), Query Frame = 1
Query:  109 SNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLK 366
            S+  + D  +P A I++++K+ LP N ++A DA+E V  C +EFI  I+SEA++ C + ++KTI+ + ++ A+ +LGF  YI  +K
Sbjct:    4 SSGNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVK 88          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NC2B_MOUSE (Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.123e-11
Identity = 33/86 (38.37%), Postives = 58/86 (67.44%), Query Frame = 1
Query:  109 SNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLK 366
            S+  + D  +P A I++++K+ LP N ++A DA+E V  C +EFI  I+SEA++ C + ++KTI+ + ++ A+ +LGF  YI  +K
Sbjct:    4 SSGNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVK 88          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NC2B_HUMAN (Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.123e-11
Identity = 33/86 (38.37%), Postives = 58/86 (67.44%), Query Frame = 1
Query:  109 SNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLK 366
            S+  + D  +P A I++++K+ LP N ++A DA+E V  C +EFI  I+SEA++ C + ++KTI+ + ++ A+ +LGF  YI  +K
Sbjct:    4 SSGNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVK 88          
BLAST of CN185079 vs. ExPASy Swiss-Prot
Match: NC2B_CHICK (Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.123e-11
Identity = 33/86 (38.37%), Postives = 58/86 (67.44%), Query Frame = 1
Query:  109 SNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLK 366
            S+  + D  +P A I++++K+ LP N ++A DA+E V  C +EFI  I+SEA++ C + ++KTI+ + ++ A+ +LGF  YI  +K
Sbjct:    4 SSGNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVK 88          
The following BLAST results are available for this feature:
BLAST of CN185079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DPOE3_PONAB1.253e-1135.96DNA polymerase epsilon subunit 3 OS=Pongo abelii G... [more]
DPOE3_HUMAN1.253e-1135.96DNA polymerase epsilon subunit 3 OS=Homo sapiens G... [more]
DPOE3_BOVIN1.253e-1135.96DNA polymerase epsilon subunit 3 OS=Bos taurus GN=... [more]
NC2B_ARATH1.637e-1133.66Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1... [more]
NC2B_RAT8.123e-1138.37Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1[more]
NC2B_MOUSE8.123e-1138.37Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1[more]
NC2B_HUMAN8.123e-1138.37Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1[more]
NC2B_CHICK8.123e-1138.37Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006L05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006L05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185079 ID=CN185079; Name=CN185079; organism=Citrus sinensis; type=EST; length=801bp
GAGGCTCAACACCTCATCAGCTAGGGTTTTCTTTCATTTGAGATGGCGGC
CGAGGCACCGGCGAGTCCAGGAGGCGGCAGCCACGAGAGCGGCGAGCAGA
GTCCGAGATCCAACGTCCGCGAACAAGACAGGTACCTTCCGATCGCTAAT
ATTAGCCGGATCATGAAGAAGGCGCTCCCTGCTAACGGAAAAATCGCTAA
GGACGCTAAAGAGACTGTCCAGGAGTGCGTTTCTGAGTTCATCAGCTTTA
TCACCAGCGAGGCGAGTGATAAGTGTCAGAGAGAGAAGAGAAAGACGATT
AACGGTGATGATTTGCTTTGGGCTATGGCAACGTTAGGCTTTGAGGATTA
TATTGATCCGCTGAAAATTTACCTAACCAGATACAGAGAGATGGAGGGTG
ACACCAAGGGTAATGCAAAAGGTGGAGATGCATCTGCTAAGAAAGATGGT
CAACCAAACCCAAACACTCAGCTTGCTCATCAAGGCTCCTTCCCGCAAGG
TGTTAACTATGGGAATTCTCAAGGAAGCATATACAATTACCAACTAGGGG
ATTTCAGTAGCATATGATACAGATACTTCTTGACATGTTATGAAGAACTA
CTGACCAGTCATGATCAATACTGTTCAGTTTGCTGTTACAGAAAAGCATC
AGTCCTGTTTGTCTGGGATTTGATGAAAAAAATTGTTTATTTCCGACTTT
ATGTTAGTTTGTTAATGTTATTTGTTTTTGCATTAAAGTAACATTGTATA
GCGGATATTCAGCTATTGCTAGTTATAAAGATGCTCTTCAACTATTAATC
T
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