CN184874

Overview
NameCN184874
Unique NameCN184874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: CYP1_BRUMA (Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia malayi GN=CYP-1 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.618e-41
Identity = 93/176 (52.84%), Postives = 109/176 (61.93%), Query Frame = -1
Query:  285 IEKMTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGT-SGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCGQL 806
            + K    RVF D+ I     GR+VMEL+ D+ P+T  NF  LCTG  G G  SGKPLHYKGSTFHR+I NFM Q           GESIYG  F DE F MKH  P ++SMAN GPNTNGSQFFI T   P L+  HVVFGKVV G  V+  +E + + S  R    VVI +CG+L
Sbjct:    1 MSKKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIB_CRYNE (Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans GN=CPR2 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.113e-41
Identity = 92/178 (51.69%), Postives = 114/178 (64.04%), Query Frame = -1
Query:  255 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESG-RTSQTVVIEDCGQLADK*E*ERYG 785
            +V+FDI  G    GR+VM L+    PKTAENFRAL TG+   G       Y+GS+FHRII NFM Q           G+SIYG KF DENFK+KHTGPG+LSMANAG +TNGSQFFICT KT WLD +HVVFG V++G  V+  ME V +  G +  + + I   G+L  + E +  G
Sbjct:   46 KVYFDIEHGGKPLGRIVMGLYGKTVPKTAENFRALATGKNSDGED-LGYGYEGSSFHRIIKNFMIQGGDFTKGDGTGGKSIYGSKFPDENFKLKHTGPGVLSMANAGRDTNGSQFFICTVKTAWLDNRHVVFGHVLEGMDVVYAMENVKTSRGDKPVEPITIAASGELPIEHEVDEQG 222          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIB_SCHJA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.028e-41
Identity = 88/171 (51.46%), Postives = 114/171 (66.67%), Query Frame = -1
Query:  285 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTS---GKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCGQL 785
            +VFFDI + +   GR+++ LF    PKT ENF+ L      IGT+   G+   YKGSTFHR+I +FM Q           G SIYG +F DENFK+KH G G LSMANAGPNTNG+QFFI T + PWLDGKHVVFGKVV+G SV++ +E + ++S  R  ++V I +CG +
Sbjct:   33 KVFFDIEVDEQPLGRIIIGLFGKTVPKTVENFKQL-----SIGTTLKDGRTAAYKGSTFHRVIKSFMIQGGDFTNHDGTGGFSIYGERFPDENFKLKHVGAGWLSMANAGPNTNGAQFFITTTQNPWLDGKHVVFGKVVEGMSVVRQIENMQTDSRDRPVKSVKIANCGHI 198          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIB_EMENI (Peptidyl-prolyl cis-trans isomerase B OS=Emericella nidulans GN=cpr2 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.028e-41
Identity = 89/173 (51.45%), Postives = 115/173 (66.47%), Query Frame = -1
Query:  285 KMTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKV-GSESGRTSQTVVIEDCGQL 800
            K+TN +V+FDI  G  + GR+V+ L+    P+TAENFRAL TGEKG G       Y+GS FHR+I +FM Q           G+SIYG KF DENFK++HT  G+LSMANAG +TNGSQFFI T  TPWLDGKHVVFG+V++GY ++  ++ V    + R  + V I   G+L
Sbjct:   31 KITN-KVYFDIQHGDESLGRIVLGLYGKTVPETAENFRALATGEKGFG-------YEGSNFHRVIKDFMIQGGDFTRGDGTGGKSIYGAKFKDENFKLRHTKTGLLSMANAGKDTNGSQFFITTAVTPWLDGKHVVFGEVLEGYDIVDKIQNVPKGRNDRPLKDVKIVKSGEL 195          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIB_BOVIN (Peptidyl-prolyl cis-trans isomerase B OS=Bos taurus GN=PPIB PE=1 SV=4)

HSP 1 Score: 167.548 bits (423), Expect = 8.028e-41
Identity = 87/168 (51.79%), Postives = 111/168 (66.07%), Query Frame = -1
Query:  285 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCGQL 785
            +V+FD+ IG  + GRVV+ LF    PKT +NF AL TGEKG G       YK S FHR+I +FM Q           G+SIYG +F DENFK+KH GPG +SMANAG +TNGSQFFI T KT WLDGKHVVFGKV++G  V++ +E   ++   +  + V I DCG++
Sbjct:   45 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG-------YKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVESTKTDGRDKPLKDVTIADCGKI 205          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIB_ARTBE (Peptidyl-prolyl cis-trans isomerase B OS=Arthroderma benhamiae GN=CPR2 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.028e-41
Identity = 92/178 (51.69%), Postives = 114/178 (64.04%), Query Frame = -1
Query:  255 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSE-SGRTSQTVVIEDCGQLADK*E*ERYG 785
            +V+FDI       GR+VM L+    PKTAENFRAL TGEKG G       Y+GSTFHR+I +FM Q           G+SIYG KF DENFK++HT  G+LSMANAG +TNGSQFFI T  T WLDGKHVVFG+V++GY ++  ++ V      R ++ V I  CG+L  K E E  G
Sbjct:   36 KVYFDIEHDGQPLGRIVMGLYGKTVPKTAENFRALATGEKGFG-------YEGSTFHRVIKDFMIQGGDFTNGDGTGGKSIYGNKFEDENFKLRHTKKGVLSMANAGKDTNGSQFFITTAITAWLDGKHVVFGEVLEGYDIVDKIQVVPKGFQDRPTKDVKIVKCGELDMKEEAEGEG 206          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPID_ASHGO (Peptidyl-prolyl cis-trans isomerase D OS=Ashbya gossypii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.049e-40
Identity = 89/169 (52.66%), Postives = 109/169 (64.50%), Query Frame = -1
Query:  285 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTS--GKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 785
            + +FD+ IG    GRVV E+++DVTPKTAENF  LC G+ G   +  G PL Y+GS FHR+I  FMCQ           GESIYG KF DENF  KH  P +LSMANAGPNTNGSQ FI    TP LDGKHVVFG+V+ G  V++ +E+  + + R    V I+ CG L
Sbjct:    6 KTYFDLSIGGKPAGRVVFEVYSDVTPKTAENFVRLCAGDAGECRTKPGVPLCYQGSLFHRVIKGFMCQFGDFTNGDGTGGESIYGEKFEDENFARKHDRPFLLSMANAGPNTNGSQCFITCAPTPHLDGKHVVFGEVIQGKRVVRAIERQETAADRPLADVRIDACGIL 174          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIB_RAT (Peptidyl-prolyl cis-trans isomerase B OS=Rattus norvegicus GN=Ppib PE=2 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 1.369e-40
Identity = 87/168 (51.79%), Postives = 109/168 (64.88%), Query Frame = -1
Query:  285 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCGQL 785
            +V+FD  IG    GRV   LF    PKT +NF AL TGEKG G       YK S FHR+I +FM Q           G+SIYG +F DENFK+KH GPG +SMANAG +TNGSQFFI T KT WLDGKHVVFGKV++G  V++ +E   ++S  +  + V+I DCG++
Sbjct:   45 KVYFDFQIGDEPVGRVTFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVIIVDCGKI 205          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: NKTR_MOUSE (NK-tumor recognition protein OS=Mus musculus GN=Nktr PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 1.369e-40
Identity = 88/173 (50.87%), Postives = 114/173 (65.90%), Query Frame = -1
Query:  276 PRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIG-TSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSE-SGRTSQTVVIEDCGQLADK 788
            P+  FDI I +   GR++ +LF+D+ PKT +NF  LC+GEKG+G T+GK L YKGSTFHR++ NFM Q           GESIYG  F DENF +KH    +LSMAN G +TNGSQFFI T+  P LDG HVVFG V+ G+ VI+ +E + ++ + R    V + DCG LA K
Sbjct:    7 PQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLATK 179          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: NKTR_HUMAN (NK-tumor recognition protein OS=Homo sapiens GN=NKTR PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.369e-40
Identity = 88/173 (50.87%), Postives = 114/173 (65.90%), Query Frame = -1
Query:  276 PRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIG-TSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSE-SGRTSQTVVIEDCGQLADK 788
            P+  FDI I +   GR++ +LF+D+ PKT +NF  LC+GEKG+G T+GK L YKGSTFHR++ NFM Q           GESIYG  F DENF +KH    +LSMAN G +TNGSQFFI T+  P LDG HVVFG V+ G+ VI+ +E + ++ + R    V + DCG LA K
Sbjct:    7 PQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLATK 179          
The following BLAST results are available for this feature:
BLAST of CN184874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
CYP1_BRUMA1.618e-4152.84Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia ma... [more]
PPIB_CRYNE2.113e-4151.69Peptidyl-prolyl cis-trans isomerase B OS=Cryptococ... [more]
PPIB_SCHJA8.028e-4151.46Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPIB_EMENI8.028e-4151.45Peptidyl-prolyl cis-trans isomerase B OS=Emericell... [more]
PPIB_BOVIN8.028e-4151.79Peptidyl-prolyl cis-trans isomerase B OS=Bos tauru... [more]
PPIB_ARTBE8.028e-4151.69Peptidyl-prolyl cis-trans isomerase B OS=Arthroder... [more]
PPID_ASHGO1.049e-4052.66Peptidyl-prolyl cis-trans isomerase D OS=Ashbya go... [more]
PPIB_RAT1.369e-4051.79Peptidyl-prolyl cis-trans isomerase B OS=Rattus no... [more]
NKTR_MOUSE1.369e-4050.87NK-tumor recognition protein OS=Mus musculus GN=Nk... [more]
NKTR_HUMAN1.369e-4050.87NK-tumor recognition protein OS=Homo sapiens GN=NK... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006E08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184874 ID=CN184874; Name=CN184874; organism=Citrus sinensis; type=EST; length=833bp
GAACTAAGTGGATCCCCCGCGGCTGCAGGTTTTTTTTTAACAAAAGCAAT
TTAGTCGTAGATTCATAACAAGTTCGATCCCACTTTGCTTTATAAGTGCA
TGCTGTTTTCAAAGAACCAAATAGTAGCTCTGCAACAACCTTTTTCTTCT
ATTCAGCCTAAGAAACACTAAACATCAATGACAAAATTAATAAGTTGCAG
GATTGCTGAATTTACATGTCAAACATCATCTTGACCTCACACACTATAGT
TCCCACCATATCTTTCTCATTCTCATTTATCTGCTAGCTGACCACAGTCT
TCAATCACAACTGTTTGCGAAGTCCTCCCACTCTCAGAACCCACCTTCTC
CATATCCTTGATGACACTGTAACCGTCTACCACTTTCCCAAACACAACAT
GTTTGCCATCAAGCCATGGTGTTTTCTGAGTGCATATAAAAAACTGTGAA
CCATTAGTGTTAGGTCCAGCATTAGCCATTGACAGAATTCCAGGCCCAGT
ATGCTTCATCTTGAAGTTCTCATCAGCAAACTTCATCCCATATATCGATT
CTCCTCCAGTTCCATTTCCCCGAGTGAAATCTCCCCCCTGACACATGAAG
TTAGGGATTATGCGGTGAAATGTCGAGCCCTTATAGTGTAGTGGCTTCCC
AGACGTTCCAATCCCTTTCTCACCAGTGCAGAGAGCACGGAAGTTTTCAG
CAGTTTTTGGGGTGACGTCAGCAAATAGCTCCATCACAACTCGCCCCTTG
TTCATCTTTCCAATCAGAATGTCAAAGAAAACCCTTGGATTCGTCATTTT
TTCTATCCAATCAAAAGCCTTTTGCTGTAATTC
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