CN184874

Overview
NameCN184874
Unique NameCN184874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIA_HELPJ (Peptidyl-prolyl cis-trans isomerase OS=Helicobacter pylori J99 GN=ppiA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.061e-12
Identity = 46/132 (34.85%), Postives = 60/132 (45.45%), Query Frame = -1
Query:  363 KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSV 758
            K NKG + +ELF    P+   NF  L           K   Y G  FHR+I  F+ Q            E     + A    K +    G +SMA+AG +T GSQFF+C    P LDG+H VFGK+    S+
Sbjct:   23 KTNKGNITLELFYKDAPQAVSNFVTLA----------KEGFYNGLNFHRVIAGFVAQGGCPYGTGTGGPEHRIKCEVAHNPNKHQR---GSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTVFGKITSAESL 141          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIA_HELPY (Peptidyl-prolyl cis-trans isomerase OS=Helicobacter pylori GN=ppiA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.691e-12
Identity = 48/140 (34.29%), Postives = 65/140 (46.43%), Query Frame = -1
Query:  345 KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKV--VDGYSVIKDMEK 758
            K NKG + +ELF    P+   NF  L           K   Y G  FHR+I  F+ Q                  + A    K K    G +SMA+AG +T GSQFF+C    P LDG+H VFGK+   +G SV+  +++
Sbjct:   24 KTNKGNIALELFYKDAPQAVSNFVTLA----------KEGFYNGLNFHRVIAGFVAQGGCPYGTGTGGPGHRIKCEVAHNPNKHKR---GSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTVFGKITSAEGLSVLDKIKQ 150          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: CWC27_CRYNE (Peptidyl-prolyl isomerase CWC27 OS=Cryptococcus neoformans GN=CWC27 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.591e-12
Identity = 51/144 (35.42%), Postives = 67/144 (46.53%), Query Frame = -1
Query:  378 EKMTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADE-NFKMKHTGPGILSMANAGP-NTNGSQFFICTQKTPWLDGKHVVFGKVV 803
            E  TN +V  D   G++      +EL+    PK   NF AL              +Y G  FHR++P F+ Q            ES YG  F DE + ++K    G+L MAN G  N+N SQFFI     P L  KH +FGK+V
Sbjct:    8 EPATNGKVIIDTTAGEIE-----VELWGKECPKAVRNFLALTMEG----------YYDGVIFHRVVPGFIIQSGDPTGTGMGG-ESFYGEPFEDEIHGRLKFNRRGLLGMANNGSRNSNTSQFFITLDAAPELTNKHTMFGKIV 135          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIB_BACSU (Peptidyl-prolyl cis-trans isomerase B OS=Bacillus subtilis GN=ppiB PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.996e-12
Identity = 48/131 (36.64%), Postives = 61/131 (46.56%), Query Frame = -1
Query:  351 RVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDM 743
            ++  EL+ +  P T  NF  L    +G         Y G TFHR+IP F+ Q               Y +K   E     H   G LSMA+AG +T GSQFFI  +  P L+G H VFGKV  G    K+M
Sbjct:   13 KIEFELYPEAAPGTVANFEKLAN--EGF--------YDGLTFHRVIPGFVSQGGCPHGTGTGGPG--YTIKCETEGNPHTHEA-GALSMAHAGKDTGGSQFFIVHEPQPHLNGVHTVFGKVTSGLEFAKNM 130          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPI_SYNE7 (Peptidyl-prolyl cis-trans isomerase OS=Synechococcus elongatus (strain PCC 7942) GN=rot PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11
Identity = 49/129 (37.98%), Postives = 59/129 (45.74%), Query Frame = -1
Query:  363 KGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSV 749
            KG + ++ F +  P T  NF  L   + G         Y G TFHR+IP FM Q                G K   E     H   G LSMA+AG NT GSQFFIC +  P LDG H  FG+  D  S+
Sbjct:   10 KGTIRLQFFDNDAPNTVANFVKL--SQDGF--------YDGLTFHRVIPGFMSQGGCPHGTGTGGP----GYKIPCEINDNPHLA-GTLSMAHAGRNTGGSQFFICHEPQPHLDGVHTTFGQTEDDESL 123          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIL4_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo sapiens GN=PPIL4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.658e-11
Identity = 49/166 (29.52%), Postives = 77/166 (46.39%), Query Frame = -1
Query:  297 GRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENF--------KMKHTGPGILSMANAGPNTNGSQFFICT-QKTPWLDGKHVVFGKVVDGYSVIK-------DMEKVGSESGRTSQTVVIED 746
            G VV++L+ +  P+   NF  LC          K  +Y     H +  +F+ Q            ESI+G  + D+          ++KH   G +SM N G + +GSQF I T +   +LDG H VFG+V +G  +IK       D + V  +  R + TV+++D
Sbjct:   10 GDVVIDLYTEERPRACLNFLKLC----------KIKYYNYCLIHNVQRDFIIQTGDPTGTGRGG-ESIFGQLYGDQASFFEAEKVPRIKHKKKGTVSMVNNGSDQHGSQFLITTGENLDYLDGVHTVFGEVTEGMDIIKKINETFVDKDFVPYQDIRINHTVILDD 164          
The following BLAST results are available for this feature:
BLAST of CN184874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
PPIA_HELPJ2.061e-1234.85Peptidyl-prolyl cis-trans isomerase OS=Helicobacte... [more]
PPIA_HELPY2.691e-1234.29Peptidyl-prolyl cis-trans isomerase OS=Helicobacte... [more]
CWC27_CRYNE4.591e-1235.42Peptidyl-prolyl isomerase CWC27 OS=Cryptococcus ne... [more]
PPIB_BACSU5.996e-1236.64Peptidyl-prolyl cis-trans isomerase B OS=Bacillus ... [more]
PPI_SYNE71.023e-1137.98Peptidyl-prolyl cis-trans isomerase OS=Synechococc... [more]
PPIL4_HUMAN8.658e-1129.52Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006E08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184874 ID=CN184874; Name=CN184874; organism=Citrus sinensis; type=EST; length=833bp
GAACTAAGTGGATCCCCCGCGGCTGCAGGTTTTTTTTTAACAAAAGCAAT
TTAGTCGTAGATTCATAACAAGTTCGATCCCACTTTGCTTTATAAGTGCA
TGCTGTTTTCAAAGAACCAAATAGTAGCTCTGCAACAACCTTTTTCTTCT
ATTCAGCCTAAGAAACACTAAACATCAATGACAAAATTAATAAGTTGCAG
GATTGCTGAATTTACATGTCAAACATCATCTTGACCTCACACACTATAGT
TCCCACCATATCTTTCTCATTCTCATTTATCTGCTAGCTGACCACAGTCT
TCAATCACAACTGTTTGCGAAGTCCTCCCACTCTCAGAACCCACCTTCTC
CATATCCTTGATGACACTGTAACCGTCTACCACTTTCCCAAACACAACAT
GTTTGCCATCAAGCCATGGTGTTTTCTGAGTGCATATAAAAAACTGTGAA
CCATTAGTGTTAGGTCCAGCATTAGCCATTGACAGAATTCCAGGCCCAGT
ATGCTTCATCTTGAAGTTCTCATCAGCAAACTTCATCCCATATATCGATT
CTCCTCCAGTTCCATTTCCCCGAGTGAAATCTCCCCCCTGACACATGAAG
TTAGGGATTATGCGGTGAAATGTCGAGCCCTTATAGTGTAGTGGCTTCCC
AGACGTTCCAATCCCTTTCTCACCAGTGCAGAGAGCACGGAAGTTTTCAG
CAGTTTTTGGGGTGACGTCAGCAAATAGCTCCATCACAACTCGCCCCTTG
TTCATCTTTCCAATCAGAATGTCAAAGAAAACCCTTGGATTCGTCATTTT
TTCTATCCAATCAAAAGCCTTTTGCTGTAATTC
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