CN184874

Overview
NameCN184874
Unique NameCN184874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIA_SAGOE (Peptidyl-prolyl cis-trans isomerase A OS=Saguinus oedipus GN=PPIA PE=3 SV=3)

HSP 1 Score: 220.705 bits (561), Expect = 7.991e-57
Identity = 111/171 (64.91%), Postives = 124/171 (72.51%), Query Frame = -1
Query:  285 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 797
            M NP VFFDI +     GRV  ELFAD  PKTAENFRAL TGEKG G       YKGS FHRIIP FMCQ           G+SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFFICT KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTVKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIA_RABIT (Peptidyl-prolyl cis-trans isomerase A OS=Oryctolagus cuniculus GN=PPIA PE=2 SV=3)

HSP 1 Score: 220.705 bits (561), Expect = 7.991e-57
Identity = 111/171 (64.91%), Postives = 124/171 (72.51%), Query Frame = -1
Query:  285 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 797
            M NP VFFDI +     GRV  ELFAD  PKTAENFRAL TGEKG G       YKGS FHRIIP FMCQ           G+SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFFICT KT WLDGKHVVFG+V +G S+++ ME  GSE+G+TS+ + I +CGQL
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFLLKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGRVKEGMSIVEAMEHFGSENGKTSKKITIANCGQL 164          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIA_AOTTR (Peptidyl-prolyl cis-trans isomerase A OS=Aotus trivirgatus GN=PPIA PE=2 SV=3)

HSP 1 Score: 220.705 bits (561), Expect = 7.991e-57
Identity = 111/171 (64.91%), Postives = 124/171 (72.51%), Query Frame = -1
Query:  285 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 797
            M NP VFFDI +     GRV  ELFAD  PKTAENFRAL TGEKG G       YKGS FHRIIP FMCQ           G+SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFFICT KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTVKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: CYPH_ALLCE (Peptidyl-prolyl cis-trans isomerase OS=Allium cepa GN=CYP PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.991e-57
Identity = 106/151 (70.20%), Postives = 121/151 (80.13%), Query Frame = -1
Query:  282 MELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 734
            MELF DV P+TAENFRALCTGEKG+G   KPLHYKGS+FHR+IP FMCQ           GESIYG KF DENF  KHTGPG+LSMANAGP TNGSQFFICT+KT WLDGKHVVFG+VV+G  V++ +EKVGS+SG+T + V I DCGQL+
Sbjct:    1 MELFQDVVPQTAENFRALCTGEKGMGDR-KPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFKDENFIKKHTGPGVLSMANAGPGTNGSQFFICTEKTAWLDGKHVVFGQVVEGMDVVRAIEKVGSQSGQTKKPVKIADCGQLS 150          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.044e-56
Identity = 109/170 (64.12%), Postives = 125/170 (73.53%), Query Frame = -1
Query:  282 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 791
            NP V+ D+       GRVV+EL ADV PKTAENFRALCTGEKG G       YKGSTFHR+IP+FMCQ           G+SIYG +F DENF +KH GPG+LSMANAGPNTNGSQFFICT KT WLDGKHVVFG V +G  V+K +E  GS+SGRTS+ +VI DCGQL+
Sbjct:   45 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 207          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIA_PIG (Peptidyl-prolyl cis-trans isomerase A OS=Sus scrofa GN=PPIA PE=1 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 1.044e-56
Identity = 110/171 (64.33%), Postives = 124/171 (72.51%), Query Frame = -1
Query:  285 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 797
            M NP VFFDI +     GRV  ELFAD  PKTAENFRAL TGEKG G       YKGS FHRIIP FMCQ           G+SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFFICT KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQ+
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQI 164          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIA_CRIGR (Peptidyl-prolyl cis-trans isomerase A OS=Cricetulus griseus GN=PPIA PE=2 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 1.044e-56
Identity = 111/171 (64.91%), Postives = 123/171 (71.93%), Query Frame = -1
Query:  285 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 797
            M NP VFFDI       GRV  ELFAD  PKTAENFRAL TGEKG G       YKGS+FHRIIP FMCQ           G SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFFICT KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct:    1 MVNPTVFFDISADGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQL 164          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIA_BOVIN (Peptidyl-prolyl cis-trans isomerase A OS=Bos taurus GN=PPIA PE=1 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 1.044e-56
Identity = 110/171 (64.33%), Postives = 124/171 (72.51%), Query Frame = -1
Query:  285 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 797
            M NP VFFDI +     GRV  ELFAD  PKTAENFRAL TGEKG G       YKGS FHRIIP FMCQ           G+SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFFICT KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQ+
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQI 164          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIA_BLAGE (Peptidyl-prolyl cis-trans isomerase OS=Blattella germanica GN=CYPA PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.325e-56
Identity = 106/171 (61.99%), Postives = 126/171 (73.68%), Query Frame = -1
Query:  285 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 797
            M +PRVFFD+       GR+VMEL +DV PKTAENFRALCTGEKG G       YKGS FHR+IPNFMCQ           G+SIYG KF DENF++KHTGPGIL MANAGPNTNGSQFFI T KT WLD +HVVFG VV+G  V+K +E +GS+SG+T++ + + DCGQ+
Sbjct:    1 MAHPRVFFDMSADGQPVGRIVMELRSDVVPKTAENFRALCTGEKGFG-------YKGSRFHRVIPNFMCQGGDFTNHNGTGGKSIYGTKFEDENFQLKHTGPGILWMANAGPNTNGSQFFITTAKTSWLDNRHVVFGSVVEGMDVVKKLESLGSQSGKTNKKIAVVDCGQI 164          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIF_RAT (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 5.180e-56
Identity = 108/170 (63.53%), Postives = 124/170 (72.94%), Query Frame = -1
Query:  282 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 791
            NP V+ D+       GRVV+EL ADV PKTAENFRALCTGEKG G       YKGSTFHR+IP FMCQ           G+SIYG +F DENF +KH GPG+LSMANAGPNTNGSQFFICT KT WLDGKHVVFG V +G  V+K +E  GS+SG+TS+ +VI DCGQL+
Sbjct:   44 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPAFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQLS 206          
The following BLAST results are available for this feature:
BLAST of CN184874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
PPIA_SAGOE7.991e-5764.91Peptidyl-prolyl cis-trans isomerase A OS=Saguinus ... [more]
PPIA_RABIT7.991e-5764.91Peptidyl-prolyl cis-trans isomerase A OS=Oryctolag... [more]
PPIA_AOTTR7.991e-5764.91Peptidyl-prolyl cis-trans isomerase A OS=Aotus tri... [more]
CYPH_ALLCE7.991e-5770.20Peptidyl-prolyl cis-trans isomerase OS=Allium cepa... [more]
PPIF_HUMAN1.044e-5664.12Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIA_PIG1.044e-5664.33Peptidyl-prolyl cis-trans isomerase A OS=Sus scrof... [more]
PPIA_CRIGR1.044e-5664.91Peptidyl-prolyl cis-trans isomerase A OS=Cricetulu... [more]
PPIA_BOVIN1.044e-5664.33Peptidyl-prolyl cis-trans isomerase A OS=Bos tauru... [more]
PPIA_BLAGE2.325e-5661.99Peptidyl-prolyl cis-trans isomerase OS=Blattella g... [more]
PPIF_RAT5.180e-5663.53Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006E08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184874 ID=CN184874; Name=CN184874; organism=Citrus sinensis; type=EST; length=833bp
GAACTAAGTGGATCCCCCGCGGCTGCAGGTTTTTTTTTAACAAAAGCAAT
TTAGTCGTAGATTCATAACAAGTTCGATCCCACTTTGCTTTATAAGTGCA
TGCTGTTTTCAAAGAACCAAATAGTAGCTCTGCAACAACCTTTTTCTTCT
ATTCAGCCTAAGAAACACTAAACATCAATGACAAAATTAATAAGTTGCAG
GATTGCTGAATTTACATGTCAAACATCATCTTGACCTCACACACTATAGT
TCCCACCATATCTTTCTCATTCTCATTTATCTGCTAGCTGACCACAGTCT
TCAATCACAACTGTTTGCGAAGTCCTCCCACTCTCAGAACCCACCTTCTC
CATATCCTTGATGACACTGTAACCGTCTACCACTTTCCCAAACACAACAT
GTTTGCCATCAAGCCATGGTGTTTTCTGAGTGCATATAAAAAACTGTGAA
CCATTAGTGTTAGGTCCAGCATTAGCCATTGACAGAATTCCAGGCCCAGT
ATGCTTCATCTTGAAGTTCTCATCAGCAAACTTCATCCCATATATCGATT
CTCCTCCAGTTCCATTTCCCCGAGTGAAATCTCCCCCCTGACACATGAAG
TTAGGGATTATGCGGTGAAATGTCGAGCCCTTATAGTGTAGTGGCTTCCC
AGACGTTCCAATCCCTTTCTCACCAGTGCAGAGAGCACGGAAGTTTTCAG
CAGTTTTTGGGGTGACGTCAGCAAATAGCTCCATCACAACTCGCCCCTTG
TTCATCTTTCCAATCAGAATGTCAAAGAAAACCCTTGGATTCGTCATTTT
TTCTATCCAATCAAAAGCCTTTTGCTGTAATTC
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