CN184874

Overview
NameCN184874
Unique NameCN184874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13044 contig Csv1_Contig13044:11..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPID_HUMAN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Homo sapiens GN=PPID PE=1 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 1.011e-51
Identity = 104/173 (60.12%), Postives = 123/173 (71.10%), Query Frame = -1
Query:  279 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIG-TSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLAD 794
            +NPRVFFD+ IG    GR+V+ELFAD+ PKTAENFRALCTGEKGIG T+GKPLH+KG  FHRII  FM Q           GESIYG KF DENF  KH   G+LSMANAG NTNGSQFFI T  TP LDGKHVVFG+V+ G  V + +E V  +  + ++  VI +CG+L +
Sbjct:   14 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFITTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGELKE 186          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIA_ECHGR (Peptidyl-prolyl cis-trans isomerase OS=Echinococcus granulosus GN=CYP-1 PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 3.841e-51
Identity = 107/167 (64.07%), Postives = 116/167 (69.46%), Query Frame = -1
Query:  285 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 785
            + FFDI IG    GR+V  LF DV PKT ENFRALCTGEKG G       YKGS FHRIIP FMCQ           G+SIYG KF DENF  KH+ P +LSMANAG NTNGSQFFI T  T WLDGKHVVFG+V  G  V+KDME VGS SG+TSQ V+I DCGQL
Sbjct:    4 KCFFDISIGGKPAGRIVFALFDDV-PKTVENFRALCTGEKGFG-------YKGSKFHRIIPGFMCQGGDFTAGNGTGGKSIYGSKFEDENFNHKHSKPMMLSMANAGKNTNGSQFFITTAVTSWLDGKHVVFGEVESGEDVVKDMEAVGSSSGKTSQEVLITDCGQL 162          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPID_AMAMU (Peptidyl-prolyl cis-trans isomerase D OS=Amanita muscaria GN=Cyp40 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 8.558e-51
Identity = 102/170 (60.00%), Postives = 119/170 (70.00%), Query Frame = -1
Query:  282 PRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRT-SQTVVIEDCGQLA 788
            P VFFDI IG    GRV   L++D+ PKTAENFRALCTGEKG+G SGKPL YKGS FHR+I  FMCQ           GESIYG KF DE F + H+ P +LSMANAGPNTNGSQFFI    TP LDGKHVVFG+V+ G SV++ +E   + +G    + VVI DCGQL+
Sbjct:    5 PIVFFDIAIGGQLAGRVAFRLYSDLVPKTAENFRALCTGEKGLGQSGKPLWYKGSAFHRVIKGFMCQGGDFTAGNGTGGESIYGEKFEDEGFPVHHSRPFLLSMANAGPNTNGSQFFITVSATPHLDGKHVVFGEVIKGRSVVRTIENNPATNGDVPKEPVVIADCGQLS 174          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIE_DROME (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster GN=cyp33 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.118e-50
Identity = 101/169 (59.76%), Postives = 117/169 (69.23%), Query Frame = -1
Query:  285 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 791
            NP+VFFDI IG  + GR+VM L ADV PKTAENFR LCT E+G G       YKG +FHR+IP FMCQ           G+SIYG KF DENF +KH   G LSMAN+G NTNGSQFFICT KT WLD KHVVFG V+ G  V++ ME+ GS+SG  SQ +VI  CG+L
Sbjct:  138 NPQVFFDIRIGGNDAGRIVMLLRADVVPKTAENFRQLCTHEQGYG-------YKGCSFHRVIPEFMCQGGDFTNNNGTGGKSIYGKKFNDENFNLKHNSFGTLSMANSGANTNGSQFFICTTKTDWLDNKHVVFGHVISGAEVVRKMERCGSKSGTPSQKIVIYSCGEL 299          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIE_BOVIN (Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.118e-50
Identity = 97/169 (57.40%), Postives = 118/169 (69.82%), Query Frame = -1
Query:  288 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQ 794
            +NP+V+ DI IG    GR+ M L +DV P TAENFR LCT EKG G       +KGS+FHRIIP FMCQ           G+SIYG KF DENF +KHTGPG+LSMAN+GPNTNGSQFF+   KT WLDGKHVVFG++ DG  V++ +E  GS+ G+  Q V+I DCG+
Sbjct:  138 SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEITDGLDVLRQIEAQGSKDGKPKQKVIISDCGE 299          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPID_ASPFU (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus fumigatus GN=cpr6 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.460e-50
Identity = 99/178 (55.62%), Postives = 123/178 (69.10%), Query Frame = -1
Query:  282 EKMTNPRVFFDILIGKMNKGRVVMEL----FADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 803
            E    PRV+FDI IG    GR+ +EL    F DV PKTAENFRALCTGEKG+G   KPL YKGS FHR+I  FM Q           GESIYG KF DENF++KH  P +LSMAN+GP TNGSQFFI T  TP LDGKHVVFG+V++G S+++ +E + +++ + +  V I DCG+L+
Sbjct:    3 ETQRRPRVYFDIQIGSQKAGRIALELVRLPFNDVVPKTAENFRALCTGEKGVGKQRKPLSYKGSIFHRVIKQFMIQGGDFTNFNGTGGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSIVRKIENMPTQADKPTTDVTIVDCGELS 180          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: CYPX_USEUD (Peptidyl-prolyl cis-trans isomerase OS=Unspecified eudicot DB-1992 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.490e-50
Identity = 104/166 (62.65%), Postives = 118/166 (71.08%), Query Frame = -1
Query:  285 FFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESG-RTSQTVVIEDCGQL 779
            FFD+ IG    GR++MELF DV PKTAENFRALCTGEKGIG SGK + Y+GS FHR+IP FM Q           GESIYG KFADENF  KHT PG+LSMANAGP TNGSQFFI T  TP LDGKHVVFGKVV+G  V++ +E   ++ G +    V I  CGQL
Sbjct:    5 FFDMTIGGQPAGRIIMELFPDV-PKTAENFRALCTGEKGIGPSGKKMTYEGSVFHRVIPKFMLQGGDFTLGNGRGGESIYGAKFADENFIHKHTTPGLLSMANAGPGTNGSQFFITTVATPHLDGKHVVFGKVVEGMDVVRKIEATQTDRGDKPLSEVKIAKCGQL 169          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.252e-50
Identity = 97/169 (57.40%), Postives = 118/169 (69.82%), Query Frame = -1
Query:  288 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQ 794
            +NP+V+ DI IG    GR+ M L +DV P TAENFR LCT EKG G       +KGS+FHRIIP FMCQ           G+SIYG KF DENF +KHTGPG+LSMAN+GPNTNGSQFF+   KT WLDGKHVVFG+V +G  V++ +E  GS+ G+  Q V+I DCG+
Sbjct:  138 SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 299          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIE_PONAB (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.247e-50
Identity = 97/169 (57.40%), Postives = 118/169 (69.82%), Query Frame = -1
Query:  288 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQ 794
            +NP+V+ DI IG    GR+ M L +DV P TAENFR LCT EKG G       +KGS+FHRIIP FMCQ           G+SIYG KF DENF +KHTGPG+LSMAN+GPNTNGSQFF+   KT WLDGKHVVFG+V +G  V++ +E  GS+ G+  Q V+I DCG+
Sbjct:  138 SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEARGSKDGKPKQKVIIADCGE 299          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIE_MOUSE (Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 5.547e-50
Identity = 97/169 (57.40%), Postives = 118/169 (69.82%), Query Frame = -1
Query:  288 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQ 794
            +NP+V+ DI IG    GR+ M L +DV P TAENFR LCT EKG G       +KGS+FHRIIP FMCQ           G+SIYG KF DENF +KHTGPG+LSMAN+GPNTNGSQFF+   KT WLDGKHVVFG+V +G  V++ +E  GS+ G+  Q V+I DCG+
Sbjct:  138 SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVMIADCGE 299          
The following BLAST results are available for this feature:
BLAST of CN184874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
PPID_HUMAN1.011e-5160.1240 kDa peptidyl-prolyl cis-trans isomerase OS=Homo... [more]
PPIA_ECHGR3.841e-5164.07Peptidyl-prolyl cis-trans isomerase OS=Echinococcu... [more]
PPID_AMAMU8.558e-5160.00Peptidyl-prolyl cis-trans isomerase D OS=Amanita m... [more]
PPIE_DROME1.118e-5059.76Peptidyl-prolyl cis-trans isomerase E OS=Drosophil... [more]
PPIE_BOVIN1.118e-5057.40Peptidyl-prolyl cis-trans isomerase E OS=Bos tauru... [more]
PPID_ASPFU1.460e-5055.62Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
CYPX_USEUD2.490e-5062.65Peptidyl-prolyl cis-trans isomerase OS=Unspecified... [more]
PPIE_HUMAN3.252e-5057.40Peptidyl-prolyl cis-trans isomerase E OS=Homo sapi... [more]
PPIE_PONAB4.247e-5057.40Peptidyl-prolyl cis-trans isomerase E OS=Pongo abe... [more]
PPIE_MOUSE5.547e-5057.40Peptidyl-prolyl cis-trans isomerase E OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006E08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184874 ID=CN184874; Name=CN184874; organism=Citrus sinensis; type=EST; length=833bp
GAACTAAGTGGATCCCCCGCGGCTGCAGGTTTTTTTTTAACAAAAGCAAT
TTAGTCGTAGATTCATAACAAGTTCGATCCCACTTTGCTTTATAAGTGCA
TGCTGTTTTCAAAGAACCAAATAGTAGCTCTGCAACAACCTTTTTCTTCT
ATTCAGCCTAAGAAACACTAAACATCAATGACAAAATTAATAAGTTGCAG
GATTGCTGAATTTACATGTCAAACATCATCTTGACCTCACACACTATAGT
TCCCACCATATCTTTCTCATTCTCATTTATCTGCTAGCTGACCACAGTCT
TCAATCACAACTGTTTGCGAAGTCCTCCCACTCTCAGAACCCACCTTCTC
CATATCCTTGATGACACTGTAACCGTCTACCACTTTCCCAAACACAACAT
GTTTGCCATCAAGCCATGGTGTTTTCTGAGTGCATATAAAAAACTGTGAA
CCATTAGTGTTAGGTCCAGCATTAGCCATTGACAGAATTCCAGGCCCAGT
ATGCTTCATCTTGAAGTTCTCATCAGCAAACTTCATCCCATATATCGATT
CTCCTCCAGTTCCATTTCCCCGAGTGAAATCTCCCCCCTGACACATGAAG
TTAGGGATTATGCGGTGAAATGTCGAGCCCTTATAGTGTAGTGGCTTCCC
AGACGTTCCAATCCCTTTCTCACCAGTGCAGAGAGCACGGAAGTTTTCAG
CAGTTTTTGGGGTGACGTCAGCAAATAGCTCCATCACAACTCGCCCCTTG
TTCATCTTTCCAATCAGAATGTCAAAGAAAACCCTTGGATTCGTCATTTT
TTCTATCCAATCAAAAGCCTTTTGCTGTAATTC
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