CN184874

Overview
NameCN184874
Unique NameCN184874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13044 contig Csv1_Contig13044:11..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: CP20C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.412e-45
Identity = 93/151 (61.59%), Postives = 109/151 (72.19%), Query Frame = -1
Query:  348 KMTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDME 800
            K+TN +V+FD+ IG    GR+VM LF +V PKT ENFRALCTGEK  G       YKGS+FHRII +FM Q           G SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFFICT KT WLD KHVVFG+V++G  +++ +E
Sbjct:   92 KVTN-KVYFDVEIGGEVAGRIVMGLFGEVVPKTVENFRALCTGEKKYG-------YKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGAKFEDENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIEGMKLVRTLE 234          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: RBP2_HUMAN (E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 5.373e-45
Identity = 91/174 (52.30%), Postives = 112/174 (64.37%), Query Frame = -1
Query:  285 IEKMTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 806
            + K TNP VFFD+       GR+ MELF+++ P+TAENFRALCTGEKG G       +K S FHR+IP+F+CQ           G+SIYG KF DENF +KHTGPG+LSMAN G NTN SQF I  +K   LD KHVVFG V DG   +K +E  GS  G   + + I +CGQ+
Sbjct: 3058 LSKETNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG-------FKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECGQI 3224          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIH_HUMAN (Peptidyl-prolyl cis-trans isomerase H OS=Homo sapiens GN=PPIH PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.373e-45
Identity = 91/170 (53.53%), Postives = 113/170 (66.47%), Query Frame = -1
Query:  285 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGS-ESGRTSQTVVIEDCGQL 791
            NP VFFD+ IG    GR+ +ELFADV PKTAENFR  CTGE      G P+ YKGSTFHR+I +FM Q             SIY   FADENFK++H+ PG+LSMAN+GP+TNG QFFI   K  WLDGKHVVFGK++DG  V++ +E V +  + +    VVI  CG++
Sbjct:   10 NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIH_GIBZE (Peptidyl-prolyl cis-trans isomerase H OS=Gibberella zeae GN=CYP3 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.373e-45
Identity = 99/173 (57.23%), Postives = 110/173 (63.58%), Query Frame = -1
Query:  285 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMK-FADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDME--KVGSE-SGRTSQTVVIEDCGQL 791
            NP VFFDI IG    GR+  ELF DV PKTAENFR  CTGE      G+P  YKGS FHRIIPNFMCQ              I+G K F DENF +KH  PG+LSMANAGPNTNGSQFFI T  TP+LD KHVVFGKV +G  V+K ME  K G       +  VVI  CG++
Sbjct:   11 NPLVFFDITIGGEPLGRITFELFKDVVPKTAENFRQFCTGESKTPV-GRPQGYKGSKFHRIIPNFMCQGGDFLNGDGTGSTCIWGFKSFEDENFTLKHDQPGLLSMANAGPNTNGSQFFITTVPTPFLDNKHVVFGKVFEGMDVVKKMEATKTGYRGKDMPNLDVVISQCGEM 182          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIH_BOVIN (Peptidyl-prolyl cis-trans isomerase H OS=Bos taurus GN=PPIH PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.373e-45
Identity = 91/170 (53.53%), Postives = 113/170 (66.47%), Query Frame = -1
Query:  285 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGS-ESGRTSQTVVIEDCGQL 791
            NP VFFD+ IG    GR+ +ELFADV PKTAENFR  CTGE      G P+ YKGSTFHR+I +FM Q             SIY   FADENFK++H+ PG+LSMAN+GP+TNG QFFI   K  WLDGKHVVFGK++DG  V++ +E V +  + +    VVI  CG++
Sbjct:   10 NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIH_CRYNE (Peptidyl-prolyl cis-trans isomerase H OS=Cryptococcus neoformans GN=CYP3 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.164e-45
Identity = 93/171 (54.39%), Postives = 113/171 (66.08%), Query Frame = -1
Query:  285 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGS-ESGRTSQTVVIEDCGQL 794
            T P VFFDI IG    GR+ MELF D+TPKTAENFR LCTGE  I +   P  YK +TFHR+IP FM Q             SIYG +F DENFK+KHTGPG+LSMAN+GPNTNG QFFI T    +LDGKH VFG+V+DG   ++ +E V +  + R    V I +CG++
Sbjct:   11 TRPIVFFDISIGDTPAGRIKMELFDDITPKTAENFRQLCTGEHRINSV--PQGYKKATFHRVIPQFMVQGGDFVRGDGTGSFSIYGAQFEDENFKVKHTGPGLLSMANSGPNTNGCQFFITTAPAEFLDGKHCVFGRVIDGLLTVRKIENVPTGANNRPKLQVRIAECGEM 179          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIB_ORPSP (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.164e-45
Identity = 95/173 (54.91%), Postives = 119/173 (68.79%), Query Frame = -1
Query:  285 KMTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESG-RTSQTVVIEDCGQL 800
            K+TN +V+FDI  G  + GR+V+ L+ +V PKT ENFRAL TGEKG G       YK S FHR+I +FM Q           G+SIYG +FADENFK++HTGPGILSMANAG +TNGSQFFI T  T WLDG+HVVFGKV++G  V+  +E   +  G R +  V+I DCG+L
Sbjct:   27 KVTN-KVYFDIKQGDKDLGRIVLGLYGEVVPKTVENFRALATGEKGYG-------YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFADENFKLRHTGPGILSMANAGRDTNGSQFFITTVTTSWLDGRHVVFGKVIEGMDVVTAIETTKTLPGDRPATPVIIADCGEL 191          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPID_CANGA (Peptidyl-prolyl cis-trans isomerase D OS=Candida glabrata GN=CPR6 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.563e-44
Identity = 101/204 (49.51%), Postives = 125/204 (61.27%), Query Frame = -1
Query:  225 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGK--PLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESG--RTSQTVVIEDCGQLADK*E---------*ERYGGNYSV*GQDD 797
            MT P+ +FDI IG   KGR+V EL+ DV PKTAENF  LC G+ G+  S    PL YKGS FHR+I +FM Q           GESIYG KF DENF++KH  P +LSMANAGPNTNGSQ FI    TP LDGKHVVFG+V++G  +++ +EK  +E G  +    V +E CG L D  E          + +G NY    +DD
Sbjct:    1 MTRPKAYFDISIGGTPKGRIVFELYKDVVPKTAENFLKLCEGKSGMAKSKPDVPLSYKGSIFHRVIKDFMIQFGDFTNFDGTGGESIYGEKFEDENFEIKHDKPFLLSMANAGPNTNGSQAFITCVPTPHLDGKHVVFGEVIEGKRLVRLIEKQQTEDGTDKPMHDVKVEGCGLLPDDYEVPADAEQTPTDEFGDNYEESLKDD 204          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIA_STRCH (Peptidyl-prolyl cis-trans isomerase A OS=Streptomyces chrysomallus GN=ppiA PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.666e-44
Identity = 95/169 (56.21%), Postives = 113/169 (66.86%), Query Frame = -1
Query:  285 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVV--DGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 785
            +V+FDI I     GR+   LF DV PKTAENFRAL TGEKG G       Y GS+FHR+I +FM Q           G+SIYG KFADENF++KH   G+LSMANAG NTNGSQFFI T  TPWLDGKHVVFG+V   D  ++++ +E +GS SGRTS  V I + G L
Sbjct:    4 KVYFDITIDDAPAGRITFNLFDDVVPKTAENFRALATGEKGFG-------YAGSSFHRVITDFMLQGGDFTRGDGTGGKSIYGEKFADENFQLKHDRVGLLSMANAGKNTNGSQFFITTVLTPWLDGKHVVFGEVADDDSMALVRKIEALGSSSGRTSAKVTIAESGAL 165          
BLAST of CN184874 vs. ExPASy Swiss-Prot
Match: PPIB_ASPFU (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus fumigatus GN=cpr2 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.482e-44
Identity = 93/171 (54.39%), Postives = 117/171 (68.42%), Query Frame = -1
Query:  276 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESG-RTSQTVVIEDCGQLADK 785
            +VFFDI  G    GR+V+ L+    PKTAENFRAL TGEKG G       Y+GSTFHR+I +FM Q           G+SIYG KFADENFK++HT  G+LSMANAG +TNGSQFFI T  TPWLDG+HVVFG+V++GY V++ +E V    G + ++TV I   GQ+ D+
Sbjct:   37 KVFFDIEHGDKPLGRIVLGLYGKTVPKTAENFRALATGEKGFG-------YEGSTFHRVIKSFMIQGGDFTRGDGTGGKSIYGEKFADENFKLRHTRKGLLSMANAGKDTNGSQFFITTVPTPWLDGRHVVFGEVLEGYEVVEQIENVPKGPGDKPAETVKIVKSGQIKDE 200          
The following BLAST results are available for this feature:
BLAST of CN184874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
CP20C_ARATH2.412e-4561.59Peptidyl-prolyl cis-trans isomerase CYP20-3, chlor... [more]
RBP2_HUMAN5.373e-4552.30E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=R... [more]
PPIH_HUMAN5.373e-4553.53Peptidyl-prolyl cis-trans isomerase H OS=Homo sapi... [more]
PPIH_GIBZE5.373e-4557.23Peptidyl-prolyl cis-trans isomerase H OS=Gibberell... [more]
PPIH_BOVIN5.373e-4553.53Peptidyl-prolyl cis-trans isomerase H OS=Bos tauru... [more]
PPIH_CRYNE9.164e-4554.39Peptidyl-prolyl cis-trans isomerase H OS=Cryptococ... [more]
PPIB_ORPSP9.164e-4554.91Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyc... [more]
PPID_CANGA1.563e-4449.51Peptidyl-prolyl cis-trans isomerase D OS=Candida g... [more]
PPIA_STRCH2.666e-4456.21Peptidyl-prolyl cis-trans isomerase A OS=Streptomy... [more]
PPIB_ASPFU3.482e-4454.39Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006E08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184874 ID=CN184874; Name=CN184874; organism=Citrus sinensis; type=EST; length=833bp
GAACTAAGTGGATCCCCCGCGGCTGCAGGTTTTTTTTTAACAAAAGCAAT
TTAGTCGTAGATTCATAACAAGTTCGATCCCACTTTGCTTTATAAGTGCA
TGCTGTTTTCAAAGAACCAAATAGTAGCTCTGCAACAACCTTTTTCTTCT
ATTCAGCCTAAGAAACACTAAACATCAATGACAAAATTAATAAGTTGCAG
GATTGCTGAATTTACATGTCAAACATCATCTTGACCTCACACACTATAGT
TCCCACCATATCTTTCTCATTCTCATTTATCTGCTAGCTGACCACAGTCT
TCAATCACAACTGTTTGCGAAGTCCTCCCACTCTCAGAACCCACCTTCTC
CATATCCTTGATGACACTGTAACCGTCTACCACTTTCCCAAACACAACAT
GTTTGCCATCAAGCCATGGTGTTTTCTGAGTGCATATAAAAAACTGTGAA
CCATTAGTGTTAGGTCCAGCATTAGCCATTGACAGAATTCCAGGCCCAGT
ATGCTTCATCTTGAAGTTCTCATCAGCAAACTTCATCCCATATATCGATT
CTCCTCCAGTTCCATTTCCCCGAGTGAAATCTCCCCCCTGACACATGAAG
TTAGGGATTATGCGGTGAAATGTCGAGCCCTTATAGTGTAGTGGCTTCCC
AGACGTTCCAATCCCTTTCTCACCAGTGCAGAGAGCACGGAAGTTTTCAG
CAGTTTTTGGGGTGACGTCAGCAAATAGCTCCATCACAACTCGCCCCTTG
TTCATCTTTCCAATCAGAATGTCAAAGAAAACCCTTGGATTCGTCATTTT
TTCTATCCAATCAAAAGCCTTTTGCTGTAATTC
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