CN184460

Overview
NameCN184460
Unique NameCN184460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184460_ssr4 microsatellite CN184460_ssr4:4..15. BLAST: Citrus ESTs to Prunus persica proteins V1
CN184460_ssr16 microsatellite CN184460_ssr16:16..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYBA2_ORYSJ (Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.130e-19
Identity = 40/109 (36.70%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSI 513
            W  +ED  L   V+ +G + W F+++     LNR  KSC  RW NYL PG+K+G ++  E+ L++ L A+ GN+W +IA  +PGRT   +  +W     K+ +E+K ++
Sbjct:   13 WTEQEDLQLVCTVRLFGERRWDFIAKVSG--LNRTGKSCRLRWVNYLHPGLKRGRMSPHEERLILELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERKSNM 119          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYBA1_ORYSJ (Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.046e-18
Identity = 43/118 (36.44%), Postives = 70/118 (59.32%), Query Frame = 1
Query:  160 LLEMKERQR---WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQK 504
            ++ ++E  R   W  +ED  L   V+ +G + W FV++     LNR  KSC  RW NYL PG+K G ++ +E++L+I L A+ GN+W +IA  +PGRT   +  +W     K+ +E++
Sbjct:    1 MVTVREEMRKGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSG--LNRTGKSCRLRWVNYLHPGLKHGRMSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERR 116          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18
Identity = 48/136 (35.29%), Postives = 74/136 (54.41%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQ--REQKDSIRIVDPIDEHKYDQILETFAEKLVNN 588
            W  EED +L  YVK +G   W+ ++++  T L R  KSC  RW NYL P +K+G+ T++E++L+I L    GN+W  IA  VPGRT  ++  +W     K+   ++QK      D + +       ET  E  ++N
Sbjct:   21 WTVEEDKILMDYVKAHGKGHWNRIAKK--TGLKRCGKSCRLRWMNYLSPNVKRGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGIKDQKTKQSNGDIVYQINLPNPTETSEETKISN 154          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MY113_ARATH (Transcription factor MYB113 OS=Arabidopsis thaliana GN=MYB113 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18
Identity = 47/105 (44.76%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQ 501
            W  EED LLR  + +YG  +W  V  R  T LNR  KSC  RW NYLKP IK+G L  +E +LV+ L    GN+W  IA  +PGRTA  +  +W     K+  E+
Sbjct:   13 WTTEEDILLRQCIDKYGEGKWHRVPLR--TGLNRCRKSCRLRWLNYLKPSIKRGKLCSDEVDLVLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKKHDER 115          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.329e-18
Identity = 45/128 (35.16%), Postives = 69/128 (53.91%), Query Frame = 1
Query:  151 CCLLLEMKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPID 534
            CC  + MK R  W  EED +L +++K+ G   W  + +R    L R  KSC  RW NYL+P +K+G +T +E++L++ L    GN+W  IA  +PGRT   +  +W     K+   Q    +   P+D
Sbjct:   17 CCTKMGMK-RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAG--LLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLD 141          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB90_ARATH (Transcription factor MYB90 OS=Arabidopsis thaliana GN=MYB90 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.973e-18
Identity = 45/101 (44.55%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 489
            W AEED+LLR  + +YG  +W  V  R    LNR  KSC  RW NYLKP IK+G L+++E +L++ L    GN+W  IA  +PGRTA  +  +W     K+
Sbjct:   13 WTAEEDSLLRLCIDKYGEGKWHQVPLRAG--LNRCRKSCRLRWLNYLKPSIKRGRLSNDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.189e-18
Identity = 43/122 (35.25%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYDQ 552
            W  EED +L  ++  +G   W+ +++  +  L R  KSC  RW NYL+P +++G++T EEQ L++ L AK GN+W KIA  +PGRT   +  +W   + ++  +Q ++  I     EH  +Q
Sbjct:   18 WTMEEDLILINFISNHGEGVWNTIAR--SAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWNRTRIQKHIKQAEASFIGHINPEHSNEQ 137          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.189e-18
Identity = 43/110 (39.09%), Postives = 66/110 (60.00%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW--EVFKEKQQREQKDS 510
            W  EED +L  Y+  +G   W+ +++  +  L R  KSC  RW NYL+P +++G++T EEQ L++ L AK GN+W KIA  +PGRT   +  +W   + K  +Q +Q  S
Sbjct:   18 WTMEEDLILINYIANHGEGVWNSLAR--SAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRTRIQKHMEQGDQSSS 125          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.777e-18
Identity = 44/113 (38.94%), Postives = 67/113 (59.29%), Query Frame = 1
Query:  151 CCLLLEMKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 489
            CC  + +K R RW AEED LL  Y+ ++G   W  + +  N  L R  KSC  RW NYL+  +K+G+++ EE++++I L A  GN+W  IA+ +PGRT   +  +W     +Q
Sbjct:    6 CCEKVGLK-RGRWTAEEDQLLANYIAEHGEGSWRSLPK--NAGLLRCGKSCRLRWINYLRADVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQ 115          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.777e-18
Identity = 48/120 (40.00%), Postives = 69/120 (57.50%), Query Frame = 1
Query:  151 CCLLLEMKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ--QREQK 504
            CC  + +  R  W  +ED  L AY++++G   W  + ++    L R  KSC  RW NYL+P +K+G+ TDEE+  +I L    GNKW KIAA +PGRT   +   W    +K+  QRE+K
Sbjct:    8 CCAKVGLN-RGSWTPQEDMRLIAYIQKHGHTNWRALPKQAG--LLRCGKSCRLRWINYLRPDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKKVAQREKK 124          
The following BLAST results are available for this feature:
BLAST of CN184460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MYBA2_ORYSJ6.130e-1936.70Myb-related protein MYBAS2 OS=Oryza sativa subsp. ... [more]
MYBA1_ORYSJ1.046e-1836.44Myb-related protein MYBAS1 OS=Oryza sativa subsp. ... [more]
WER_ARATH1.783e-1835.29Transcription factor WER OS=Arabidopsis thaliana G... [more]
MY113_ARATH1.783e-1844.76Transcription factor MYB113 OS=Arabidopsis thalian... [more]
MYB5_ARATH2.329e-1835.16Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
MYB90_ARATH3.973e-1844.55Transcription factor MYB90 OS=Arabidopsis thaliana... [more]
MYB40_ANTMA5.189e-1835.25Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]
MYB05_ANTMA5.189e-1839.09Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
MYBP_MAIZE6.777e-1838.94Myb-related protein P OS=Zea mays GN=P PE=2 SV=1[more]
MYB1_MAIZE6.777e-1840.00Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005I20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184460 ID=CN184460; Name=CN184460; organism=Citrus sinensis; type=EST; length=682bp
AGGGTTTGTTTGTTTTTTCTTTCTTTCTCTCTTGCTTTCTGTTTCATTGA
AGAAGCTAAGGTTGCCGGATGTGCAAAGAAGAACAAGTTGGGTTTTTTAA
CACTTGAAGTTAAGAAATATACAGTATGAAGAATTTTACGCAATGGACAG
TGTTGTTTACTCCTGGAAATGAAGGAGAGACAGCGTTGGAGAGCTGAAGA
GGATGCTTTATTACGTGCATATGTGAAACAATATGGCCCGAAGGAGTGGA
GTTTTGTATCACAGCGCATGAACACACCCCTAAACAGGGATGCAAAATCT
TGCTTAGAAAGGTGGAAGAACTACCTCAAACCAGGCATCAAGAAAGGATC
CCTTACTGACGAGGAGCAGAATCTTGTCATCCATCTCCAAGCAAAACACG
GCAACAAGTGGAAGAAAATTGCAGCTGAAGTCCCCGGTCGAACTGCTAAG
AGACTGGGCAAGTGGTGGGAAGTGTTCAAAGAGAAGCAGCAGAGAGAACA
AAAGGATTCCATAAGAATAGTTGATCCAATTGATGAGCACAAGTACGATC
AGATTCTAGAGACTTTTGCAGAGAAGCTAGTGAACAACCATTCATTTGTC
ATGGCCACTTCTAACGGAGGTTTTCTTCATACTGACCCAGCTACCCCTCC
AAATCTGCTTCCCCCATGGCTTTCAAATTCGA
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