CN184460

Overview
NameCN184460
Unique NameCN184460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184460_ssr4 microsatellite CN184460_ssr4:4..15. BLAST: Citrus ESTs to Prunus persica proteins V1
CN184460_ssr16 microsatellite CN184460_ssr16:16..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB98_ARATH (Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.493e-17
Identity = 41/107 (38.32%), Postives = 64/107 (59.81%), Query Frame = 1
Query:  184 RWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQK 504
            +W AEED +L   V++YG ++WS ++Q +     R  K C ERW N+L+P IKK + ++EE  ++I    + GNKW +IA  +PGRT   +   W   K +Q  ++K
Sbjct:  219 QWTAEEDRVLIQLVEKYGLRKWSHIAQVLP---GRIGKQCRERWHNHLRPDIKKETWSEEEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRK 322          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.786e-17
Identity = 42/113 (37.17%), Postives = 61/113 (53.98%), Query Frame = 1
Query:  151 CCLLLEMKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 489
            CC   +  ++  W  EED  L AY+ + G   W  + +     LNR  KSC  RW NYL+P I++G  +D E++ ++ L A  GNKW KIA  +PGRT   +  +W     K+
Sbjct:    6 CCDQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAG--LNRCGKSCRLRWMNYLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKK 116          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens GN=PP2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.786e-17
Identity = 45/133 (33.83%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  151 CCLLLEMKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYD 549
            CC  + ++ R  W +EED  L +++   G   W  + +     L R  KSC  RW NYL+P +K+G  ++ E+NL++ L A  GN+W +IAA++PGRT   +  +W    +K+ R Q        P+++ K D
Sbjct:    6 CCEKVGLR-RGPWTSEEDQKLVSHITNNGLSCWRAIPKLAG--LLRCGKSCRLRWTNYLRPDLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKRLRSQGLDPNTHLPLEDSKLD 135          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB46_ARATH (Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.180e-16
Identity = 40/113 (35.40%), Postives = 67/113 (59.29%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVD 525
            W  EED+ L  Y+   G   WS V++  N  L R  KSC  RW NYL+P +K+G+ + +E++L+I   +  GN+W +IAA +PGRT   +  +W    +K+ ++  D+  +++
Sbjct:   23 WSPEEDSKLMQYMLSNGQGCWSDVAK--NAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKKMSDTSNLIN 133          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.847e-16
Identity = 46/113 (40.71%), Postives = 64/113 (56.64%), Query Frame = 1
Query:  151 CCLLLEMKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 489
            CC  L +K+   W AEED  L +++   G   W  V +     L R  KSC  RW NYL+P +K+G L+D E+ LVI L ++ GN+W KIAA +PGRT   +   W    +K+
Sbjct:    6 CCDKLGVKKGP-WTAEEDKKLISFILTNGQCCWRAVPKLAG--LKRCGKSCRLRWTNYLRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKK 115          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB86_ARATH (Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.847e-16
Identity = 42/117 (35.90%), Postives = 67/117 (57.26%), Query Frame = 1
Query:  151 CCLLLEMKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQ 501
            CC   +++ +  W  EED  L  Y+ ++G   WS V +     L R  KSC  RW NYL+P +K+G+ + +E++L+I L A  GN+W +IA  +PGRT   +  +W    +K+ R +
Sbjct:    6 CCFKQKLR-KGLWSPEEDEKLLNYITRHGHGCWSSVPKLAG--LQRCGKSCRLRWINYLRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRRK 119          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.847e-16
Identity = 42/113 (37.17%), Postives = 66/113 (58.41%), Query Frame = 1
Query:  151 CCLLLEMKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 489
            CC  + +K+   W  EED +L A+++++G   W  + ++    L R  KSC  RW NYL+P IK+G+ + EE++ +IHL    GN+W  IAA +PGRT   +   W    +K+
Sbjct:    6 CCEKMGLKKGP-WTPEEDKVLVAHIQRHGHGNWRALPKQAG--LLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKR 115          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.847e-16
Identity = 42/106 (39.62%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  151 CCLLLEMKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 468
            CC    M  +  W  EED LL  Y++++G   W  + +     L R  KSC  RW NYL+P +K+G+ T+EE  L+I L +  GNKW  IA  +PGRT   +  +W
Sbjct:    6 CCEKAHMN-KGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAG--LQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYW 108          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.082e-15
Identity = 43/113 (38.05%), Postives = 64/113 (56.64%), Query Frame = 1
Query:  151 CCLLLEMKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 489
            CC   ++K R  W  EED+ LR Y+++YG    +++S  +   L R  KSC  RW NYL+P IK G  ++EE  ++  L A  G++W  IAA +PGRT   +  +W     K+
Sbjct:    6 CCDKTKVK-RGPWSPEEDSKLRDYIEKYG-NGGNWISFPLKAGLRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKK 116          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYBA_XENLA (Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.413e-15
Identity = 39/105 (37.14%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW-EVFKEKQQRE 498
            W  EED  +   V +YGPK+WS +++ +     R  K C ERW N+L P +KK S T+EE  ++     + GN+W +IA  +PGRT   +   W    K K ++E
Sbjct:   89 WTKEEDQRVIELVHKYGPKKWSIIAKHLK---GRIGKQCRERWHNHLNPDVKKSSWTEEEDRIIYSAHKRMGNRWAEIAKLLPGRTDNSIKNHWNSTMKRKVEQE 190          
The following BLAST results are available for this feature:
BLAST of CN184460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MYB98_ARATH7.493e-1738.32Transcription factor MYB98 OS=Arabidopsis thaliana... [more]
MYB39_ARATH9.786e-1737.17Transcription factor MYB39 OS=Arabidopsis thaliana... [more]
MYB2_PHYPA9.786e-1733.83Myb-related protein Pp2 OS=Physcomitrella patens G... [more]
MYB46_ARATH2.180e-1635.40Transcription factor MYB46 OS=Arabidopsis thaliana... [more]
ODO1_PETHY2.847e-1640.71Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 S... [more]
MYB86_ARATH2.847e-1635.90Transcription factor MYB86 OS=Arabidopsis thaliana... [more]
MYB4_ORYSJ2.847e-1637.17Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]
MYB3_ARATH2.847e-1639.62Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
RAX1_ARATH1.082e-1538.05Transcription factor RAX1 OS=Arabidopsis thaliana ... [more]
MYBA_XENLA1.413e-1537.14Myb-related protein A OS=Xenopus laevis GN=mybl1 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005I20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184460 ID=CN184460; Name=CN184460; organism=Citrus sinensis; type=EST; length=682bp
AGGGTTTGTTTGTTTTTTCTTTCTTTCTCTCTTGCTTTCTGTTTCATTGA
AGAAGCTAAGGTTGCCGGATGTGCAAAGAAGAACAAGTTGGGTTTTTTAA
CACTTGAAGTTAAGAAATATACAGTATGAAGAATTTTACGCAATGGACAG
TGTTGTTTACTCCTGGAAATGAAGGAGAGACAGCGTTGGAGAGCTGAAGA
GGATGCTTTATTACGTGCATATGTGAAACAATATGGCCCGAAGGAGTGGA
GTTTTGTATCACAGCGCATGAACACACCCCTAAACAGGGATGCAAAATCT
TGCTTAGAAAGGTGGAAGAACTACCTCAAACCAGGCATCAAGAAAGGATC
CCTTACTGACGAGGAGCAGAATCTTGTCATCCATCTCCAAGCAAAACACG
GCAACAAGTGGAAGAAAATTGCAGCTGAAGTCCCCGGTCGAACTGCTAAG
AGACTGGGCAAGTGGTGGGAAGTGTTCAAAGAGAAGCAGCAGAGAGAACA
AAAGGATTCCATAAGAATAGTTGATCCAATTGATGAGCACAAGTACGATC
AGATTCTAGAGACTTTTGCAGAGAAGCTAGTGAACAACCATTCATTTGTC
ATGGCCACTTCTAACGGAGGTTTTCTTCATACTGACCCAGCTACCCCTCC
AAATCTGCTTCCCCCATGGCTTTCAAATTCGA
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