CN184460

Overview
NameCN184460
Unique NameCN184460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.413e-15
Identity = 45/133 (33.83%), Postives = 68/133 (51.13%), Query Frame = 1
Query:  154 CLLLEMKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYDQ 552
            C   +   +  W  EED  L +Y+K +G   W  + +  +  L R  KSC  RW NYL+P +K+G+ T EE +L+I L +  GNKW  IA  +PGRT   +  +W    +++   +        PI+E K  Q
Sbjct:    6 CCEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPR--SAGLQRCGKSCRLRWINYLRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKGIDPATHRPINETKTSQ 136          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: LAF1_ARATH (Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.413e-15
Identity = 46/148 (31.08%), Postives = 75/148 (50.68%), Query Frame = 1
Query:  175 ERQR---WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ--QREQKDSIRIVDPIDEHKYDQIL--ETFAEKLVNNHSF 597
            ER R   W  EED  LR+++  YG   W+ V   +   L R+ KSC  RW NYL+PG+K+  ++ EE+  ++   +  GNKW +IA  +PGRT   +  +W    +K+  + +     + + P        +   +   E L++NH F
Sbjct:    8 ERHRKGLWSPEEDEKLRSFILSYGHSCWTTVP--IKAGLQRNGKSCRLRWINYLRPGLKRDMISAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHLKKKWLKSQSLQDAKSISPPSSSSSSLVACGKRNPETLISNHVF 153          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYBA_DICDI (Myb-like protein A OS=Dictyostelium discoideum GN=mybA PE=4 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.846e-15
Identity = 42/118 (35.59%), Postives = 61/118 (51.69%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEH 540
            W  +ED  +   VK YGPK+WS ++  +     R  K C ERW N+L P IKK + +DEE  ++    A HGNKW +IA  +PGRT   +   W       +R   +++ +     EH
Sbjct:  204 WTKDEDDKVIELVKTYGPKKWSDIALHLK---GRMGKQCRERWHNHLNPNIKKEAWSDEEDQIIRDQHAIHGNKWAEIAKFLPGRTDNAIKNHW---NSSMKRVSNNNVHLKSHAIEH 315          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.410e-15
Identity = 44/124 (35.48%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  151 CCLLLEMKERQRWRAEEDALLRAYVKQYGPK-EWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEV-FKEKQQREQKDSIR 516
            CC    +K+   W  EEDA L++Y++  G    W  + Q++   L R  KSC  RW NYL+P IK G  ++EE+N++  L    G++W  IAA++PGRT   +  +W    K+K   +Q+  ++
Sbjct:    6 CCDKANVKKGP-WSPEEDAKLKSYIENSGTGGNWIALPQKIG--LKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLINKQRKELQ 126          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.410e-15
Identity = 40/94 (42.55%), Postives = 54/94 (57.45%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 468
            W  EED  L AY+K +G   W  + +     L R  KSC  RW NYL+P +K+G+ T+EE  L+I L +  GNKW  IA  +PGRT   +  +W
Sbjct:   17 WTKEEDERLVAYIKAHGEGCWRSLPKAAG--LLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYW 108          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYBA_MOUSE (Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.148e-15
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW-EVFKEKQQRE 498
            W  EED  +   V++YGPK WS +++ +     R  K C ERW N+L P +KK S T+EE  ++     + GN+W +IA  +PGRT   +   W    + K ++E
Sbjct:   90 WTKEEDQRVIELVQKYGPKRWSLIAKHLK---GRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQE 191          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYBA_HUMAN (Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.148e-15
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW-EVFKEKQQRE 498
            W  EED  +   V++YGPK WS +++ +     R  K C ERW N+L P +KK S T+EE  ++     + GN+W +IA  +PGRT   +   W    + K ++E
Sbjct:   90 WTKEEDQRVIELVQKYGPKRWSLIAKHLK---GRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQE 191          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYBAA_DICDI (Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.111e-15
Identity = 40/115 (34.78%), Postives = 62/115 (53.91%), Query Frame = 1
Query:  166 EMKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW-EVFKEKQQREQKD 507
            E K +  W  EED  LR+ V  +G K W +++  +     R+ + C ERW N L P IK+ + T EE  +++   +K+GNKW +I+  +PGRT   +   W    K K  ++Q D
Sbjct:  753 ESKAKGHWTKEEDEKLRSLVDLHGTKRWKYIASLLCL---RNGRQCRERWSNQLDPSIKRDAWTLEEDRIILDAHSKYGNKWAEISKLLPGRTNCAIKNHWNSTMKRKLSKKQYD 864          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB_XENLA (Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.370e-15
Identity = 38/105 (36.19%), Postives = 57/105 (54.29%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW-EVFKEKQQRE 498
            W  EED  +   V +YGPK WS +++ +     R  K C ERW N+L P +KK S T+EE   +     + GN+W +IA  +PGRT   +   W    + K+++E
Sbjct:   92 WTKEEDQRVIELVHKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNPEVKKSSWTEEEDRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKEEQE 193          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB_DROME (Myb protein OS=Drosophila melanogaster GN=Myb PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.370e-15
Identity = 35/109 (32.11%), Postives = 61/109 (55.96%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSI 513
            W  +ED ++   V+ +GPK+W+ +++ +N    R  K C ERW N+L P IKK + T++E  ++     + GN+W KIA  +PGRT   +   W     ++   ++ S+
Sbjct:  139 WTRDEDDMVIKLVRNFGPKKWTLIARYLN---GRIGKQCRERWHNHLNPNIKKTAWTEKEDEIIYQAHLELGNQWAKIAKRLPGRTDNAIKNHWNSTMRRKYDVERRSV 244          
The following BLAST results are available for this feature:
BLAST of CN184460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MYB32_ARATH1.413e-1533.83Transcription factor MYB32 OS=Arabidopsis thaliana... [more]
LAF1_ARATH1.413e-1531.08Transcription factor LAF1 OS=Arabidopsis thaliana ... [more]
MYBA_DICDI1.846e-1535.59Myb-like protein A OS=Dictyostelium discoideum GN=... [more]
RAX3_ARATH2.410e-1535.48Transcription factor RAX3 OS=Arabidopsis thaliana ... [more]
MYB4_ARATH2.410e-1542.55Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYBA_MOUSE3.148e-1536.19Myb-related protein A OS=Mus musculus GN=Mybl1 PE=... [more]
MYBA_HUMAN3.148e-1536.19Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=... [more]
MYBAA_DICDI4.111e-1534.78Myb-like protein AA OS=Dictyostelium discoideum GN... [more]
MYB_XENLA5.370e-1536.19Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1[more]
MYB_DROME5.370e-1532.11Myb protein OS=Drosophila melanogaster GN=Myb PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005I20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184460 ID=CN184460; Name=CN184460; organism=Citrus sinensis; type=EST; length=682bp
AGGGTTTGTTTGTTTTTTCTTTCTTTCTCTCTTGCTTTCTGTTTCATTGA
AGAAGCTAAGGTTGCCGGATGTGCAAAGAAGAACAAGTTGGGTTTTTTAA
CACTTGAAGTTAAGAAATATACAGTATGAAGAATTTTACGCAATGGACAG
TGTTGTTTACTCCTGGAAATGAAGGAGAGACAGCGTTGGAGAGCTGAAGA
GGATGCTTTATTACGTGCATATGTGAAACAATATGGCCCGAAGGAGTGGA
GTTTTGTATCACAGCGCATGAACACACCCCTAAACAGGGATGCAAAATCT
TGCTTAGAAAGGTGGAAGAACTACCTCAAACCAGGCATCAAGAAAGGATC
CCTTACTGACGAGGAGCAGAATCTTGTCATCCATCTCCAAGCAAAACACG
GCAACAAGTGGAAGAAAATTGCAGCTGAAGTCCCCGGTCGAACTGCTAAG
AGACTGGGCAAGTGGTGGGAAGTGTTCAAAGAGAAGCAGCAGAGAGAACA
AAAGGATTCCATAAGAATAGTTGATCCAATTGATGAGCACAAGTACGATC
AGATTCTAGAGACTTTTGCAGAGAAGCTAGTGAACAACCATTCATTTGTC
ATGGCCACTTCTAACGGAGGTTTTCTTCATACTGACCCAGCTACCCCTCC
AAATCTGCTTCCCCCATGGCTTTCAAATTCGA
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