CN184460

Overview
NameCN184460
Unique NameCN184460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB_MOUSE (Myb proto-oncogene protein OS=Mus musculus GN=Myb PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.013e-15
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW-EVFKEKQQRE 498
            W  EED  +   V++YGPK WS +++ +     R  K C ERW N+L P +KK S T+EE  ++     + GN+W +IA  +PGRT   +   W    + K ++E
Sbjct:   95 WTKEEDQRVIELVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQE 196          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB_HUMAN (Myb proto-oncogene protein OS=Homo sapiens GN=MYB PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.013e-15
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW-EVFKEKQQRE 498
            W  EED  +   V++YGPK WS +++ +     R  K C ERW N+L P +KK S T+EE  ++     + GN+W +IA  +PGRT   +   W    + K ++E
Sbjct:   95 WTKEEDQRVIELVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQE 196          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB_CHICK (Myb proto-oncogene protein OS=Gallus gallus GN=MYB PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.013e-15
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW-EVFKEKQQRE 498
            W  EED  +   V++YGPK WS +++ +     R  K C ERW N+L P +KK S T+EE  ++     + GN+W +IA  +PGRT   +   W    + K ++E
Sbjct:   95 WTKEEDQRVIELVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQE 196          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB_BOVIN (Myb proto-oncogene protein OS=Bos taurus GN=MYB PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.013e-15
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW-EVFKEKQQRE 498
            W  EED  +   V++YGPK WS +++ +     R  K C ERW N+L P +KK S T+EE  ++     + GN+W +IA  +PGRT   +   W    + K ++E
Sbjct:   95 WTKEEDQRVIELVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQE 196          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB_AVIMB (Transforming protein Myb OS=Avian myeloblastosis virus GN=V-MYB PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.013e-15
Identity = 38/105 (36.19%), Postives = 59/105 (56.19%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW-EVFKEKQQRE 498
            W  EED  +  +V++YGPK WS +++ +     R  K C ERW N+L P +KK S T+EE  ++     + GN+W +IA  +PGRT   +   W    + K ++E
Sbjct:   24 WTKEEDQRVIEHVQKYGPKRWSDIAKHLK---GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKVEQE 125          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.013e-15
Identity = 39/97 (40.21%), Postives = 56/97 (57.73%), Query Frame = 1
Query:  178 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 468
            R  W  EED  L AY++ +G   W  + +     L R  KSC  RW NYL+P +K+G+ T +E +L++ L +  GNKW  IAA +PGRT   +  +W
Sbjct:   14 RGAWTKEEDERLVAYIRAHGEGCWRSLPKAAG--LLRCGKSCRLRWINYLRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYW 108          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.013e-15
Identity = 43/115 (37.39%), Postives = 61/115 (53.04%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPI 531
            W  EED  L AY+K +G   W  + +     L R  KSC  RW NYL+P +K+G+ + EE  L+I L +  GNKW  IA  +PGRT   +  +W          +K + R +DP+
Sbjct:   17 WTKEEDDRLTAYIKAHGEGCWRSLPKAAG--LLRCGKSCRLRWINYLRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNT-----HIRRKLTSRGIDPV 124          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.013e-15
Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 468
            W  EED  L AY++ +G   W  + +     L R  KSC  RW NYL+P +K+G+ T+EE  L+I L +  GNKW  IA  +PGRT   +  +W
Sbjct:   17 WTKEEDDRLVAYIRAHGEGCWRSLPKAAG--LLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYW 108          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MB3R1_ARATH (Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.562e-14
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 489
            W  EED  +   V++YGPK+WS +SQ +     R  K C ERW N+L PGI K + T EE+  +I     +GNKW ++   +PGR+   +   W    +K+
Sbjct:   90 WSKEEDNTIIDLVEKYGPKKWSTISQHLP---GRIGKQCRERWHNHLNPGINKNAWTQEEELTLIRAHQIYGNKWAELMKFLPGRSDNSIKNHWNSSVKKK 187          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYBA_CHICK (Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 37/105 (35.24%), Postives = 57/105 (54.29%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW-EVFKEKQQRE 498
            W  EED  +   V++YGPK WS +++ +     R  K C ERW N+L P +KK S T+ E  ++     + GN+W +IA  +PGRT   +   W    + K ++E
Sbjct:   90 WTKEEDQRVIELVQKYGPKRWSLIAKHLK---GRIGKQCRERWHNHLNPEVKKSSWTEAEDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQE 191          
The following BLAST results are available for this feature:
BLAST of CN184460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MYB_MOUSE7.013e-1536.19Myb proto-oncogene protein OS=Mus musculus GN=Myb ... [more]
MYB_HUMAN7.013e-1536.19Myb proto-oncogene protein OS=Homo sapiens GN=MYB ... [more]
MYB_CHICK7.013e-1536.19Myb proto-oncogene protein OS=Gallus gallus GN=MYB... [more]
MYB_BOVIN7.013e-1536.19Myb proto-oncogene protein OS=Bos taurus GN=MYB PE... [more]
MYB_AVIMB7.013e-1536.19Transforming protein Myb OS=Avian myeloblastosis v... [more]
MYB38_MAIZE7.013e-1540.21Myb-related protein Zm38 OS=Zea mays PE=2 SV=1[more]
MYB1_HORVU7.013e-1537.39Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1... [more]
MYB08_ANTMA7.013e-1541.49Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]
MB3R1_ARATH1.562e-1437.62Myb-related protein 3R-1 OS=Arabidopsis thaliana G... [more]
MYBA_CHICK2.041e-1435.24Myb-related protein A OS=Gallus gallus GN=MYBL1 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005I20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184460 ID=CN184460; Name=CN184460; organism=Citrus sinensis; type=EST; length=682bp
AGGGTTTGTTTGTTTTTTCTTTCTTTCTCTCTTGCTTTCTGTTTCATTGA
AGAAGCTAAGGTTGCCGGATGTGCAAAGAAGAACAAGTTGGGTTTTTTAA
CACTTGAAGTTAAGAAATATACAGTATGAAGAATTTTACGCAATGGACAG
TGTTGTTTACTCCTGGAAATGAAGGAGAGACAGCGTTGGAGAGCTGAAGA
GGATGCTTTATTACGTGCATATGTGAAACAATATGGCCCGAAGGAGTGGA
GTTTTGTATCACAGCGCATGAACACACCCCTAAACAGGGATGCAAAATCT
TGCTTAGAAAGGTGGAAGAACTACCTCAAACCAGGCATCAAGAAAGGATC
CCTTACTGACGAGGAGCAGAATCTTGTCATCCATCTCCAAGCAAAACACG
GCAACAAGTGGAAGAAAATTGCAGCTGAAGTCCCCGGTCGAACTGCTAAG
AGACTGGGCAAGTGGTGGGAAGTGTTCAAAGAGAAGCAGCAGAGAGAACA
AAAGGATTCCATAAGAATAGTTGATCCAATTGATGAGCACAAGTACGATC
AGATTCTAGAGACTTTTGCAGAGAAGCTAGTGAACAACCATTCATTTGTC
ATGGCCACTTCTAACGGAGGTTTTCTTCATACTGACCCAGCTACCCCTCC
AAATCTGCTTCCCCCATGGCTTTCAAATTCGA
back to top