CN184460

Overview
NameCN184460
Unique NameCN184460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 37/94 (39.36%), Postives = 54/94 (57.45%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 468
            W  EED  L  Y++ +G   W  + +  +  L R  KSC  RW NYL+P +K+G+ TD+E  ++I L +  GNKW  IA  +PGRT   +  +W
Sbjct:   17 WTKEEDQRLVDYIRNHGEGCWRSLPK--SAGLLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYW 108          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB3_HORVU (Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.546e-14
Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQ 501
            W  EED  L  ++ ++G   WS V +     LNR  KSC  RW NYL+P +K+G  + +E++ ++ L    GN+W +IA+ +PGRT   +  +W    +K+ R+Q
Sbjct:   19 WSPEEDEKLYNHIIRHGVGCWSSVPRL--AALNRCGKSCRLRWINYLRPDLKRGCFSQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKLRQQ 121          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.546e-14
Identity = 48/143 (33.57%), Postives = 68/143 (47.55%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYDQILET-FAEKLVNNHSFVMATS 612
            W  EED  L  Y++ +G   W  + +     L R  KSC  RW NYL+P +K+G+ T+EE  ++I L +  GNKW  IA  +PGRT   +  +W         ++K   R +DP      +    T  A   VNN      TS
Sbjct:   17 WTKEEDQRLINYIRAHGEGCWRSLPKAAG--LLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNT-----HIKRKLVSRGIDPQTHRSLNSATTTATATPTVNNSCLDFRTS 152          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.937e-14
Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = 1
Query:  151 CCLLLEMKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 489
            CC    +K R  W  EEDA L+ Y+++ G    ++++      L R  KSC  RW NYL+P I+ G  T+EE N++  L A  G++W  IAA + GRT   +  +W    +K+
Sbjct:    6 CCDKANVK-RGPWSPEEDAKLKDYIEKQGTGG-NWIALPHKAGLRRCGKSCRLRWLNYLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKK 116          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.937e-14
Identity = 42/122 (34.43%), Postives = 61/122 (50.00%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW-EVFKEK-------------QQREQKDS 510
            W  EED  +   VK+YG K W+ +++++     R  K C ERW N+L P +KK S T+EE  ++       GN+W +IA  +PGRT   +   W    K K             QQ E++DS
Sbjct:   86 WTKEEDEKVIELVKKYGTKHWTLIAKQLR---GRMGKQCRERWHNHLNPEVKKSSWTEEEDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVETGGFLTVKASGQQEEREDS 204          

HSP 2 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 51/167 (30.54%), Postives = 76/167 (45.51%), Query Frame = 1
Query:  166 EMKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNK-WKKIAAEVPGRTAKRLGKWW------EVFKEKQQREQKDSIRIVDPIDEHKYDQILETF---AEKLVNNH---SFVMATSNGGFL 627
            E + + +W  EED  L+A VK++G  EW  ++  +N   NR  + C  RW   L P + KG  T EE   VI L  K+G K W  IA ++ GR  K+  + W      EV K     E+   I     +  +++ +I +      +  V NH   +       GGFL
Sbjct:   27 ENRVKVKWTPEEDETLKALVKKHGQGEWKTIASNLN---NRTEQQCQHRWLRVLHPDLVKGPWTKEEDEKVIELVKKYGTKHWTLIAKQLRGRMGKQCRERWHNHLNPEVKKSSWTEEEDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVETGGFL 190          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYBB_CHICK (Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.937e-14
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 468
            W  EED  +   VK+YG K+W+ +++ +     R  K C ERW N+L P +KK S T+EE  ++       GN+W +IA  +PGRT   +   W
Sbjct:   86 WTKEEDQKVIELVKKYGTKQWTLIAKHLK---GRLGKQCRERWHNHLNPEVKKSSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHW 176          

HSP 2 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 51/177 (28.81%), Postives = 76/177 (42.94%), Query Frame = 1
Query:  139 RNGQCCLLLEMKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNK-WKKIAAEVPGRTAKRLGKWW------EVFKEKQQREQKDSIRIVDPIDEHKYDQILETF---AEKLVNNH---SFVMATSNGGFLH 630
            R+G+C        + +W  EED  L+  V+ YG  +W F++       NR  + C  RW   L P + KG  T EE   VI L  K+G K W  IA  + GR  K+  + W      EV K     E+   I     +  +++ +I +      +  V NH   +       GGFL+
Sbjct:   26 RDGRC--------KVKWTQEEDEQLKMLVRHYGQNDWKFLASHFP---NRSDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVDTGGFLN 191          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYBQ_DICDI (Myb-like protein Q OS=Dictyostelium discoideum GN=mybQ PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 37/94 (39.36%), Postives = 52/94 (55.32%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 468
            W+ EEDA L   V + GPKEWS ++ ++     R  K C ERW N+L P ++K + T EE  ++I   A  GNKW  I+  + GR A  +   W
Sbjct:  280 WKDEEDAKLVELVNKCGPKEWSSIAAKIP---GRIGKQCRERWFNHLSPEVRKTNWTPEEDKIIIDAHASLGNKWTAISKMLDGRPANAIKNHW 370          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYBB_MOUSE (Myb-related protein B OS=Mus musculus GN=Mybl2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 34/94 (36.17%), Postives = 51/94 (54.26%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 468
            W  EED  +   VK+YG K+W+ +++ +     R  K C ERW N+L P +KK   T+EE  ++       GN+W +IA  +PGRT   +   W
Sbjct:   86 WTKEEDQKVIELVKKYGTKQWTLIAKHLK---GRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHW 176          

HSP 2 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 40/107 (37.38%), Postives = 56/107 (52.34%), Query Frame = 1
Query:  160 LLEMKERQ---RWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNK-WKKIAAEVPGRTAKRLGKWW 468
            LLE ++ +   +W  EED  LRA V+Q+G ++W F++       NR  + C  RW   L P + KG  T EE   VI L  K+G K W  IA  + GR  K+  + W
Sbjct:   22 LLEQRDNRCKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP---NRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERW 125          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYBB_HUMAN (Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 34/94 (36.17%), Postives = 51/94 (54.26%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 468
            W  EED  +   VK+YG K+W+ +++ +     R  K C ERW N+L P +KK   T+EE  ++       GN+W +IA  +PGRT   +   W
Sbjct:   86 WTKEEDQKVIELVKKYGTKQWTLIAKHLK---GRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHW 176          

HSP 2 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 51/167 (30.54%), Postives = 75/167 (44.91%), Query Frame = 1
Query:  166 EMKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNK-WKKIAAEVPGRTAKRLGKWW------EVFKEKQQREQKDSIRIVDPIDEHKYDQILETF---AEKLVNNH---SFVMATSNGGFL 627
            + K + +W  EED  LRA V+Q+G ++W F++       NR  + C  RW   L P + KG  T EE   VI L  K+G K W  IA  + GR  K+  + W      EV K     E+   I     +  +++ +I +      +  V NH   +       GGFL
Sbjct:   27 DSKCKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP---NRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKVDTGGFL 190          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYBM_DICDI (Myb-like protein M OS=Dictyostelium discoideum GN=mybM PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 40/122 (32.79%), Postives = 60/122 (49.18%), Query Frame = 1
Query:  184 RWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE----QKDSIRIVDPIDE 537
            +W  EED  L   V  YG K+W  +S  M     +    C + WK  L P I+KG   ++E+ L++ L  +HG+ WKKIA  +  RT  +    ++  K  Q RE     K+   +V  +DE
Sbjct:   69 KWTEEEDQKLFQLVSIYGEKKWKRISAEMGG--QKTGAQCAQHWKRVLSPDIRKGPWDEDEEELLLRLVNQHGSSWKKIAKRICKRTDIQCR--YQYLKSLQSREVAWVPKEDEVLVKKVDE 186          
The following BLAST results are available for this feature:
BLAST of CN184460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MYB6_ARATH2.041e-1439.36Transcription repressor MYB6 OS=Arabidopsis thalia... [more]
MYB3_HORVU4.546e-1436.19Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB... [more]
MYB30_ANTMA4.546e-1433.57Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
RAX2_ARATH5.937e-1436.28Transcription factor RAX2 OS=Arabidopsis thaliana ... [more]
MYBB_XENLA5.937e-1434.43Myb-related protein B OS=Xenopus laevis GN=mybl2 P... [more]
MYBB_CHICK5.937e-1437.23Myb-related protein B OS=Gallus gallus GN=MYBL2 PE... [more]
MYBQ_DICDI2.256e-1339.36Myb-like protein Q OS=Dictyostelium discoideum GN=... [more]
MYBB_MOUSE2.256e-1336.17Myb-related protein B OS=Mus musculus GN=Mybl2 PE=... [more]
MYBB_HUMAN2.256e-1336.17Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=... [more]
MYBM_DICDI2.112e-1132.79Myb-like protein M OS=Dictyostelium discoideum GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005I20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184460 ID=CN184460; Name=CN184460; organism=Citrus sinensis; type=EST; length=682bp
AGGGTTTGTTTGTTTTTTCTTTCTTTCTCTCTTGCTTTCTGTTTCATTGA
AGAAGCTAAGGTTGCCGGATGTGCAAAGAAGAACAAGTTGGGTTTTTTAA
CACTTGAAGTTAAGAAATATACAGTATGAAGAATTTTACGCAATGGACAG
TGTTGTTTACTCCTGGAAATGAAGGAGAGACAGCGTTGGAGAGCTGAAGA
GGATGCTTTATTACGTGCATATGTGAAACAATATGGCCCGAAGGAGTGGA
GTTTTGTATCACAGCGCATGAACACACCCCTAAACAGGGATGCAAAATCT
TGCTTAGAAAGGTGGAAGAACTACCTCAAACCAGGCATCAAGAAAGGATC
CCTTACTGACGAGGAGCAGAATCTTGTCATCCATCTCCAAGCAAAACACG
GCAACAAGTGGAAGAAAATTGCAGCTGAAGTCCCCGGTCGAACTGCTAAG
AGACTGGGCAAGTGGTGGGAAGTGTTCAAAGAGAAGCAGCAGAGAGAACA
AAAGGATTCCATAAGAATAGTTGATCCAATTGATGAGCACAAGTACGATC
AGATTCTAGAGACTTTTGCAGAGAAGCTAGTGAACAACCATTCATTTGTC
ATGGCCACTTCTAACGGAGGTTTTCTTCATACTGACCCAGCTACCCCTCC
AAATCTGCTTCCCCCATGGCTTTCAAATTCGA
back to top