CN189157

Overview
NameCN189157
Unique NameCN189157
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189157 vs. ExPASy Swiss-Prot
Match: S47A2_MOUSE (Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.268e-13
Identity = 65/250 (26.00%), Postives = 119/250 (47.60%), Query Frame = 2
Query:    5 VLTICAILLLPLFFFTKPILVALGQEENIAEVAGTISLMLIPVLFAFIISFTCQMYLQAQSRNM--IISYLAACSVSLHLFLSWLFTMKLNFGLPGALGSTILAYWIPNLGQLLFVICGGCP---QTWKGFSFAAFKDLWPVVKLSLSSGAMLCLELWYNTVLVLLTGNMKNAEVAIDALAICININGLEMMISLGFLAAVGVRVSNELGRGSANAAKFAIKVAVFTSLLIGCVLFIIFLFLRGRVAYIF 739
            +L +C      +F  T+ +L+ L Q+ ++A +A    ++ IP L A  +      YLQ+Q   M  +I  +AA  V++ +    L+ + L  G+ G+  +   + +   L  LLF+          TW G++   F++     +L++ S  M+C+E W   +   L G +   E+   A A+   +  +  M+  GF  A  VRV N LG G+A+ A+ +    +  + +   ++ I+   L+  VAYIF
Sbjct:  131 ILLLCCFPCWAIFLNTERLLLLLRQDPDVARLAQVYVMICIPALPAAFLFQLQTRYLQSQGIIMPQVIVGIAANVVNVGMNAFLLYALDL--GVVGSAWANTTSQFF--LSALLFLYVWWKRIHIHTWGGWTRECFQEWSSYTRLAIPSMFMVCIEWWTFEIGTFLAGLVNVTELG--AQAVIYELASVAYMVPFGFGVAASVRVGNALGAGNADQARCSCTTVLLCAGVCALLVGILLAALKDVVAYIF 374          
BLAST of CN189157 vs. ExPASy Swiss-Prot
Match: S47A1_XENTR (Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12
Identity = 64/251 (25.50%), Postives = 119/251 (47.41%), Query Frame = 2
Query:   23 ILLLPLFFF--------TKPILVALGQEENIAEVAGTISLMLIPVLFAFIISFTCQMYLQAQS---RNMIISYLAACSVSLHLFLSWLFTMKLNFGLPGALGSTILAYWIPNLGQLLFVICGGC-PQTWKGFSFAAFKDLWPVVKLSLSSGAMLCLELWYNTVLVLLTGNMKNAEVAIDALAICININGLEMMISLGFLAAVGVRVSNELGRGSANAAKFAIKVAVFTSLLIGCVLFIIFLFLRGRVAYIF 739
            IL+L LF F        T+ IL+   Q+  ++++     L+ +P L A  +      YLQ Q      ++  ++A    +L    +++    L  G+ G+  +  ++ +I  +   L+++       TW G+S A F++    ++L+++S  MLC+E W   + + L G +   ++A  A AI   +  +  +I LG   A  +RV + LG G+   AK +  V +  + L   +  I+   L+  VAYIF
Sbjct:  134 ILILLLFCFPCWALLINTESILLLFRQDPEVSKLTQIYVLIFLPALPAAFLYQLLAKYLQNQGIIYPQVLTGFIANIFNAL---FNYILLYVLGLGVMGSACANTVSQFIQMILLFLYIVWRRLYADTWGGWSQACFEEWGAFIRLAVASMLMLCIEWWAFEISMFLAGVLGMVDLA--AQAIIYQVAIVVYLIPLGLCIAGSIRVGHGLGAGNTEQAKRSALVVLCMTELCALLSGILLATLKDVVAYIF 379          
The following BLAST results are available for this feature:
BLAST of CN189157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
S47A2_MOUSE1.268e-1326.00Multidrug and toxin extrusion protein 2 OS=Mus mus... [more]
S47A1_XENTR1.402e-1225.50Multidrug and toxin extrusion protein 1 OS=Xenopus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G14_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189157 ID=CN189157; Name=CN189157; organism=Citrus sinensis; type=EST; length=779bp
GAGGGTCTTAACCATTTGTGCTATCCTTCTCTTACCTCTGTTCTTCTTCA
CTAAACCAATTTTGGTGGCTTTGGGCCAAGAAGAAAATATTGCTGAAGTG
GCGGGAACTATTTCTCTCATGCTAATCCCTGTGTTGTTCGCCTTCATCAT
ATCCTTTACCTGCCAAATGTACCTACAAGCCCAGAGCAGAAACATGATTA
TCTCCTACTTGGCGGCATGTTCAGTTTCGCTTCATCTCTTTCTTTCGTGG
CTTTTTACCATGAAATTGAATTTTGGACTCCCTGGAGCATTGGGATCAAC
AATTCTGGCATACTGGATTCCAAACTTGGGTCAACTTCTGTTTGTTATAT
GTGGAGGGTGCCCTCAAACATGGAAGGGTTTCTCATTTGCTGCTTTCAAG
GATCTCTGGCCTGTAGTAAAACTTTCCTTGTCGTCTGGCGCCATGCTATG
TCTCGAGCTCTGGTACAACACAGTCTTGGTTCTTTTAACAGGAAACATGA
AAAATGCTGAGGTTGCCATTGATGCTCTTGCAATATGCATCAACATCAAT
GGGCTAGAAATGATGATCTCGCTTGGTTTCTTGGCTGCAGTAGGTGTTAG
GGTGTCAAATGAGCTTGGCCGAGGAAGCGCAAATGCTGCAAAATTTGCTA
TTAAGGTGGCAGTTTTCACATCGCTTTTGATTGGATGTGTGCTGTTTATC
ATTTTCCTCTTCCTCAGAGGACGCGTAGCATACATTTTTCCCCGACAATC
AAGATGTGATTGACACAGTTGCAGATCTA
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