CN189154

Overview
NameCN189154
Unique NameCN189154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1497 contig Csv1_Contig1497:342..1066. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189154 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.805e-31
Identity = 83/159 (52.20%), Postives = 103/159 (64.78%), Query Frame = -1
Query:  250 KYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGY------GLKPAQPQ-GDSFFHALE--CEPTLQIGYQPAD-PISVVTAGPSLNNYMQGWLP 696
            +YLKLKAR E LQR+QRNLLGE+LG L  KELE LE+QLD SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L+++L E  Q++       A   GY       ++   P  G+ FFH+LE   EPTLQIG+ P     S VTA      +M  WLP
Sbjct:   96 EYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRKLEESNQLHGQVWEHGATLLGYERQSPHAVQQVPPHGGNGFFHSLEAAAEPTLQIGFTPEQMNNSCVTA------FMPTWLP 248          
BLAST of CN189154 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.069e-27
Identity = 69/153 (45.10%), Postives = 97/153 (63.40%), Query Frame = -1
Query:  253 KKYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFH--ALECEPTLQIGYQPA--DPISVVTAGPSLNNYMQGWL 699
            ++YLKLKA+ + LQRS RNLLGE+LG L++KELE LE QLD SL+QIRS +TQ+MLD L +LQ KE++L E+N+ LK +L E    +     P+ +         +  GD FF    L C   LQIGY  A  D ++  T+  +++ + QGW+
Sbjct:   92 QEYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTKLEE----SCASFRPNWD--------VRQPGDGFFEPLPLPCNNNLQIGYNEATQDQMNATTSAQNVHGFAQGWM 232          
BLAST of CN189154 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.059e-23
Identity = 60/127 (47.24%), Postives = 85/127 (66.93%), Query Frame = -1
Query:  319 KKYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIGYQ 699
            ++YLKLK R E LQ +QRNLLGE+L PL+ KELE LE Q+++SL  IRS++ Q +LD + EL+ KEQ L +ANK LK+++ E    N L +  S +D G     ++   +   HA+ C+P+L IGYQ
Sbjct:   94 QEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETSGENMLHI--SCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217          
BLAST of CN189154 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.059e-23
Identity = 60/127 (47.24%), Postives = 85/127 (66.93%), Query Frame = -1
Query:  319 KKYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIGYQ 699
            ++YLKLK R E LQ +QRNLLGE+L PL+ KELE LE Q+++SL  IRS++ Q +LD + EL+ KEQ L +ANK LK+++ E    N L +  S +D G     ++   +   HA+ C+P+L IGYQ
Sbjct:   94 QEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETSGENMLHI--SCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217          
BLAST of CN189154 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.623e-22
Identity = 66/157 (42.04%), Postives = 96/157 (61.15%), Query Frame = -1
Query:  253 KLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL-MEGYQVNTLQLNPSAEDCG----YGLKPAQPQGDSFFHALECEPTLQIGYQ----PADPISV---VTAGPSLNNYMQGWL 687
            KLKA++EALQR+QR+LLGE+LGPL+ KEL+ LE+QL+ +L Q R  +TQ M++ + EL+ KE+ L E N+ LK +L +EG   N   +  ++   G     G    QP   S   A++ EPTLQIGY     PA+  ++        + NN+M GW+
Sbjct:   95 KLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTSNYRAMQQASWAQGAVVENGAAYVQPPPHS--AAMDSEPTLQIGYPHQFVPAEANTIQRSTAPAGAENNFMLGWV 249          
BLAST of CN189154 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.623e-22
Identity = 63/158 (39.87%), Postives = 92/158 (58.23%), Query Frame = -1
Query:  256 KLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAED--------CGYGLKPAQPQGDSFFHALECEPTLQIGY------QPADPISVVTAGPSLNNYMQGW 687
            +LK + E LQRSQR++LGE+LGPL+ KEL+ LE+QL+ SL Q R  +TQ M++ + +L+ KE+ L E NK LK +L    + ++     + +D         G  +  AQP  D     ++CEPTLQIGY      + A+P S    G   NN++ GW
Sbjct:   97 RLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEA--EADSSNCRSAIQDSWVHGTVVSGGRVLNAQPPPD-----IDCEPTLQIGYYQFVRPEAANPRSNGGGGDQNNNFVMGW 247          
BLAST of CN189154 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.293e-21
Identity = 59/132 (44.70%), Postives = 82/132 (62.12%), Query Frame = -1
Query:  322 KKYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLN------PSAEDCGYGLKPAQPQGDSFFHALECEPTLQIGY 699
            ++YLKLK R E LQ +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L+++L E    N L ++       S        +P   QG    H  + + +LQIGY
Sbjct:   90 QEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVLHMSWQDGGGHSGSSTVLADQPHHHQGLLHPHPDQGDHSLQIGY 221          
BLAST of CN189154 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.293e-21
Identity = 59/132 (44.70%), Postives = 82/132 (62.12%), Query Frame = -1
Query:  322 KKYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLN------PSAEDCGYGLKPAQPQGDSFFHALECEPTLQIGY 699
            ++YLKLK R E LQ +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L+++L E    N L ++       S        +P   QG    H  + + +LQIGY
Sbjct:   90 QEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVLHMSWQDGGGHSGSSTVLADQPHHHQGLLHPHPDQGDHSLQIGY 221          
BLAST of CN189154 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 61/163 (37.42%), Postives = 90/163 (55.21%), Query Frame = -1
Query:  253 YLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME----------GYQVNTLQLNPSAEDCGYGLKPAQP--QGDSFFHALECEPTLQI----GYQPADPISVVTAGPSLNNYMQGWL 693
            YLKLK+R E LQ SQR+LLGEEL  ++  ELE LERQ+D SL+QIRST+ + MLD L++L+ KE++L E N+ L+++L +          G      Q     +  G     + P  Q   FF  L+    LQ+     + PA+  +  T   ++N +  GW+
Sbjct:   95 YLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKLEDSDAALTQSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGFFKPLQGNVALQMSSHYNHNPANATNSATTSQNVNGFFPGWM 257          
BLAST of CN189154 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.248e-19
Identity = 58/138 (42.03%), Postives = 79/138 (57.25%), Query Frame = -1
Query:  307 KKYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYG-------LKPAQPQGDSFFHALECEPTLQIGYQPADP 699
            ++Y+ LKA  E LQ+SQRNLLGE+L PL + ELE LE Q+  +LKQIRS +TQ +LD L +L+ KEQ+L +AN+ LK++L E          P   +C  G            PQ + FF AL     + +   PA P
Sbjct:   93 QEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDEIDVEAAPPQPPWNGNCSNGHGGGGGVFSSEPPQPEHFFQALGLH-AVDVNQPPAPP 229          
The following BLAST results are available for this feature:
BLAST of CN189154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
MADS8_ORYSJ7.805e-3152.20MADS-box transcription factor 8 OS=Oryza sativa su... [more]
CMB1_DIACA3.069e-2745.10MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
MADS5_ORYSJ2.059e-2347.24MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI2.059e-2347.24MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS6_ORYSJ6.623e-2242.04MADS-box transcription factor 6 OS=Oryza sativa su... [more]
MAD17_ORYSJ6.623e-2239.87MADS-box transcription factor 17 OS=Oryza sativa s... [more]
MADS1_ORYSJ4.293e-2144.70MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI4.293e-2144.70MADS-box transcription factor 1 OS=Oryza sativa su... [more]
AGL3_ARATH2.130e-2037.42Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
MAD34_ORYSJ5.248e-1942.03MADS-box transcription factor 34 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G12_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189154 ID=CN189154; Name=CN189154; organism=Citrus sinensis; type=EST; length=726bp
GAGGCTCAAACAAGGCTTTGTTAAATAAAGATAAGCGCGGTGATTGAAAA
TACACGCACACACAACATAGCTATATATCGTCATCAGTTTCCCTAAAGTG
CAGGATCACTGTAGAGTTATTATAATAAATCCTTATGATTGCGTGTTCCT
AGTCACTGAATAGGGTTGCTTACAAAGGGATACAAAGTTGCTGATTCTTA
TGGATCAACTACAATACATTGACTGGTAATGCCCGCCGCTCTCTTAGCAT
GGTAGCCATCCTTGCATGTAATTATTCAGACTCGGGCCTGCTGTGACAAC
CGATATTGGGTCCGCAGGCTGGTATCCAATTTGCAATGTGGGTTCACATT
CCAAGGCGTGAAAGAAGCTATCGCCCTGAGGTTGAGCTGGTTTAAGCCCA
TAACCACAATCTTCTGCACTAGGATTCAATTGAAGTGTGTTCACTTGGTA
TCCCTCCATCAACCTTTGTTTGAGGGTCTTATTTGCTTCGCTCAGCAACT
GTTCCTTATGTTGCAGTTCAGTAAGGGTATCCAGCATGTACTGAGTTCTT
GTTGATCTGATCTGCTTCAATGACATATCAAGCTGCCTTTCAAGTGACTC
AAGCTCTTTGCTGTTTAGAGGGCCAAGTTCTTCTCCAAGGAGATTCCTTT
GGGATCTCTGTAGGGCTTCATATCGTGCTTTAAGCTTCAGATATTTCTTG
CTGGCTACTTACCTCCAGGGCCTCCC
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