CN189037

Overview
NameCN189037
Unique NameCN189037
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189037 vs. ExPASy Swiss-Prot
Match: PARP2_MOUSE (Poly [ADP-ribose] polymerase 2 OS=Mus musculus GN=Parp2 PE=1 SV=3)

HSP 1 Score: 234.958 bits (598), Expect = 3.579e-61
Identity = 126/253 (49.80%), Postives = 168/253 (66.40%), Query Frame = 2
Query:   23 IIDASNRFFTVIPSIH----PHVIRDEDDFKSKVKMLEALQDIEIASRLVGFDVDS-DDSLDEKYKKLRCDIAPLPHDSEDYQLIEKYLHTTHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKYMDKP-PDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNV 763
            +++A N F+T IP       P VIR E +   KVK+LEAL DIEIA +LV  +    +  LD+ Y+ L C + PL H+S ++++I +YL +THAPTH D+++ L +VF +E+EGE + F   +  L NRMLLWHGSRL+N+VGILS GLR+APPEAP TGYMFGKGIYFAD+ SKSA YCF  +    GL+LLSEV LG+  EL +A    +    GKHSTKG+GK  P  + F+      TVP G  + + +
Sbjct:  274 LVEACNEFYTRIPHDFGLSIPPVIRTEKELSDKVKLLEALGDIEIALKLVKSERQGLEHPLDQHYRNLHCALRPLDHESNEFKVISQYLQSTHAPTHKDYTMTLLDVFEVEKEGEKEAF---REDLPNRMLLWHGSRLSNWVGILSHGLRVAPPEAPITGYMFGKGIYFADMSSKSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAQGLLRGKHSTKGMGKMAPSPAHFITLNGS-TVPLGPASDTGI 522          
BLAST of CN189037 vs. ExPASy Swiss-Prot
Match: PARP2_HUMAN (Poly [ADP-ribose] polymerase 2 OS=Homo sapiens GN=PARP2 PE=1 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 1.360e-60
Identity = 123/253 (48.62%), Postives = 171/253 (67.59%), Query Frame = 2
Query:   23 IIDASNRFFTVIPSIH----PHVIRDEDDFKSKVKMLEALQDIEIASRLVGFDVDSDDS-LDEKYKKLRCDIAPLPHDSEDYQLIEKYLHTTHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAK-YMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNV 763
            +++A N F+T IP       P +IR + +   K+++LEAL DIEIA +LV  ++ S +  LD+ Y+ L C + PL H+S ++++I +YL +THAPTH+D+++ L ++F +E++GE + F   +  L NRMLLWHGSR++N+VGILS GLRIAPPEAP TGYMFGKGIYFAD+ SKSA YCF  +    GL+LLSEV LG+  EL +A    +    GKHSTKGLGK  P  + FV      TVP G  + + +
Sbjct:  298 LMEACNEFYTRIPHDFGLRTPPLIRTQKELSEKIQLLEALGDIEIAIKLVKTELQSPEHPLDQHYRNLHCALRPLDHESYEFKVISQYLQSTHAPTHSDYTMTLLDLFEVEKDGEKEAF---REDLHNRMLLWHGSRMSNWVGILSHGLRIAPPEAPITGYMFGKGIYFADMSSKSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAEGLLQGKHSTKGLGKMAPSSAHFVTLNGS-TVPLGPASDTGI 546          
BLAST of CN189037 vs. ExPASy Swiss-Prot
Match: PARP_SARPE (Poly [ADP-ribose] polymerase OS=Sarcophaga peregrina PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.168e-60
Identity = 120/247 (48.58%), Postives = 166/247 (67.21%), Query Frame = 2
Query:   26 IDASNRFFTVIP----SIHPHVIRDEDDFKSKVKMLEALQDIEIASRLVGFDVDSDD--SLDEKYKKLRCDIAPLPHDSEDYQLIEKYLHTTHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKP 748
            IDA+NRF+T+IP    +  P ++   +  +   +ML++L +IE A  L+  +    D   +D+ Y++L+  + PL  +SE+Y L++KY+  THA TH  + LE+ ++F + R+GE  ++  + +KL NR LLWHGSRLTNF GILS GL+IAPPEAP TGYMFGKGIYFAD+VSKSA YC T   N  GLMLLSEV LG++ E   AKY+ K P+ KHS  G G+T+P  S+ +   D V +P GKP
Sbjct:  715 IDATNRFYTLIPHNFGTQSPPLLDTTEQVEQLRQMLDSLIEIECAYSLLQTEDSKADINPIDKHYEQLKTKLEPLDKNSEEYILLQKYVKNTHAETHKLYDLEVVDIFKVARQGEARRYKPF-KKLHNRRLLWHGSRLTNFAGILSHGLKIAPPEAPVTGYMFGKGIYFADMVSKSANYCCTSHHNSTGLMLLSEVALGDMMECTAAKYVTKLPNDKHSCFGRGRTMPNPSESIIREDGVEIPLGKP 960          
BLAST of CN189037 vs. ExPASy Swiss-Prot
Match: PRP2A_ORYSJ (Poly [ADP-ribose] polymerase 2-A OS=Oryza sativa subsp. japonica GN=PARP2-A PE=3 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 3.350e-59
Identity = 120/246 (48.78%), Postives = 161/246 (65.45%), Query Frame = 2
Query:   35 SNRFFTVIP------SIHPHVIRDEDDFKSKVKMLEALQDIEIASRLVGFD-VDSDDSLDEKYKKLRCDIAPLPHDSEDYQLIEKYLHTTHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKY-MDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKP 748
            +  F+TVIP       +   +I      K+K++M+EAL +IEIA++L+  D  D DD L  +YK+L CD  PL   SE+Y +I+ YL  TH  THT +++++ ++F + R GE ++F  +     NRMLLWHGSRLTN+ GILSQGLRIAPPEAP TGYMFGKG+YFAD+ SKSA YC+  +    G++LL EV LGE+ EL  A Y  +  P GK STKG+G+T P  ++     D V VP GKP
Sbjct:  378 TGEFYTVIPHDFGFKKMREFIIDTPQKLKAKLEMVEALGEIEIATKLLEDDSTDQDDPLYARYKQLSCDFTPLEVGSEEYSMIKTYLANTHGKTHTSYTVDVVQIFKVSRHGEMERFQKFATA-GNRMLLWHGSRLTNWAGILSQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYASEACRSGVLLLCEVALGEMNELLNADYDANNLPKGKLSTKGVGQTEPNTAESKITDDGVVVPLGKP 622          
BLAST of CN189037 vs. ExPASy Swiss-Prot
Match: PARP2_ARATH (Poly [ADP-ribose] polymerase 2 OS=Arabidopsis thaliana GN=PARP2 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.273e-58
Identity = 118/248 (47.58%), Postives = 160/248 (64.52%), Query Frame = 2
Query:   29 DASNRFFTVIP------SIHPHVIRDEDDFKSKVKMLEALQDIEIASRLVGFDVD-SDDSLDEKYKKLRCDIAPLPHDSEDYQLIEKYLHTTHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKY-MDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKP 748
            + S  F+TVIP       +   VI      K K++M+EAL +IE+A++L+  D    DD L   Y++L C + P+ +DSE++ ++  Y+  THA TH+ +++E+ ++F   R  E D+F  +    KNRMLLWHGSRLTN+ GILSQGLRIAPPEAP TGYMFGKG+YFAD+ SKSA YC+ +     G++LL EV LG++ EL  + Y  D  P GK STKG+GKT P  S+     D V VP GKP
Sbjct:  354 ELSGEFYTVIPHDFGFKKMSQFVIDTPQKLKQKIEMVEALGEIELATKLLSVDPGLQDDPLYYHYQQLNCGLTPVGNDSEEFSMVANYMENTHAKTHSGYTVEIAQLFRASRAVEADRFQQFSSS-KNRMLLWHGSRLTNWAGILSQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYANTGANDGVLLLCEVALGDMNELLYSDYNADNLPPGKLSTKGVGKTAPNPSEAQTLEDGVVVPLGKP 600          
BLAST of CN189037 vs. ExPASy Swiss-Prot
Match: PARP_DROME (Poly [ADP-ribose] polymerase OS=Drosophila melanogaster GN=Parp PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.836e-58
Identity = 116/247 (46.96%), Postives = 164/247 (66.40%), Query Frame = 2
Query:   23 IIDASNRFFTVIPSIH----PHVIRDEDDFKSKVKMLEALQDIEIASRLVGFDVDSD--DSLDEKYKKLRCDIAPLPHDSEDYQLIEKYLHTTHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGK 745
            +IDA+NRF+T+IP       P +I      +   +ML++L +IE+A  ++  +  SD  + LD  Y +++  +  L  +SE++ ++ +Y+  THA TH  + L++ +VF + R+GE  +F  + +KL NR LLWHGSRLTNFVGILS GLRIAPPEAP TGYMFGKGIYFAD+VSKSA YC T ++N  GLMLLSEV LG++ E   AKY++K  + KHS  G G+T+P  +      D V +P G+
Sbjct:  711 LIDATNRFYTLIPHNFGVQLPTLIETHQQIEDLRQMLDSLAEIEVAYSIIKSEDVSDACNPLDNHYAQIKTQLVALDKNSEEFSILSQYVKNTHASTHKSYDLKIVDVFKVSRQGEARRFKPF-KKLHNRKLLWHGSRLTNFVGILSHGLRIAPPEAPPTGYMFGKGIYFADMVSKSANYCCTSQQNSTGLMLLSEVALGDMMECTSAKYINKLSNNKHSCFGRGRTMPDPTKSYIRSDGVEIPYGE 956          
BLAST of CN189037 vs. ExPASy Swiss-Prot
Match: PARP2_MAIZE (Poly [ADP-ribose] polymerase 2 OS=Zea mays GN=PARP2 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.401e-57
Identity = 114/246 (46.34%), Postives = 161/246 (65.45%), Query Frame = 2
Query:   35 SNRFFTVIP------SIHPHVIRDEDDFKSKVKMLEALQDIEIASRLVGFDV-DSDDSLDEKYKKLRCDIAPLPHDSEDYQLIEKYLHTTHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKY-MDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKP 748
            +  F+TVIP       +   +I      K+K++M+EAL +IEIA++L+  D  D DD L  +YK+L CD  PL  DS++Y +I+ YL  TH  TH+ +++++ ++F + R GE ++F  +    +NRMLLWHGSRL+N+ GILSQGLRIAPPEAP TGYMFGKG+YFAD+ SKSA YC+  +    G++LL EV LG++ EL  A Y  +  P GK  +KG+G+T P   +     D V VP G+P
Sbjct:  371 TGEFYTVIPHDFGFRKMREFIIDTPQKLKAKLEMVEALGEIEIATKLLEDDSSDQDDPLYARYKQLHCDFTPLEADSDEYSMIKSYLRNTHGKTHSGYTVDIVQIFKVSRHGETERFQKFA-STRNRMLLWHGSRLSNWAGILSQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYASEACRSGVLLLCEVALGDMNELLNADYDANNLPKGKLRSKGVGQTAPNMVESKVADDGVVVPLGEP 615          
BLAST of CN189037 vs. ExPASy Swiss-Prot
Match: PRP2B_ORYSJ (Poly [ADP-ribose] polymerase 2-B OS=Oryza sativa subsp. japonica GN=PARP2-B PE=3 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 3.833e-55
Identity = 114/246 (46.34%), Postives = 158/246 (64.23%), Query Frame = 2
Query:   35 SNRFFTVIP------SIHPHVIRDEDDFKSKVKMLEALQDIEIASRLVGFDV-DSDDSLDEKYKKLRCDIAPLPHDSEDYQLIEKYLHTTHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKY-MDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKP 748
            +  F++VIP       +   +I      K+K++M+EAL +IEIA +L+  D  D D  L  +YK+  CD  PL  DSE+Y +I+ YL  TH  THT +++++ ++F + R GE ++F  +     NRMLLWHGSRLTN+ GILSQGLRIAPPEAP +G+MFGKG+YFAD+ SKSA YC   +    G+MLL EV LGE+ EL    +  D  P+GK STKG+G+T P  ++     D + +P GKP
Sbjct:  322 TGEFYSVIPHDFGFKKMSEFIIDTPQKLKAKLEMVEALSEIEIAIKLLEDDSSDQDHPLYARYKQFCCDFTPLEVDSEEYSMIKTYLTNTHGKTHTGYTVDIVQIFKVSRLGEMERFQKFA-SAGNRMLLWHGSRLTNWAGILSQGLRIAPPEAPISGFMFGKGVYFADMFSKSANYCCASEACKSGVMLLCEVALGEMNELLYGDFGADNLPNGKLSTKGVGQTEPNIAESKITDDGMVIPLGKP 566          
BLAST of CN189037 vs. ExPASy Swiss-Prot
Match: PME1_CAEEL (Poly(ADP-ribose) polymerase pme-1 OS=Caenorhabditis elegans GN=pme-1 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.753e-45
Identity = 110/257 (42.80%), Postives = 146/257 (56.81%), Query Frame = 2
Query:    8 VKESLIIDASNRFFTVIPSIH----PHVIRDEDDFKSKVKMLEALQDIEIA-SRLVGFDVDSDDSL-----DEKYKKLRCDIAPLPHDSEDYQLIEKYLHTTHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKYMDKP--PDGKHSTKGLGKTVPQESDFVKWRDDVTVPCG 742
            +  S I+D SN+F+T+IP       P  I      K K  ML AL DI+ A  ++ G DV +  SL     D  Y+KL+C + PL    +D+ +I +YL  TH  TH D  +EL ++  L R+ E  KF   +R + NR LLWHGS   NF GIL QGLRIAPPEAP +GYMFGKG+YFAD+ SKS  YC  + K     +LL +V LG V +L  +K + +   P G  S +GLG+  P+E       D  T+P G
Sbjct:  649 IDASRILDFSNKFYTIIPHNFGMRVPEPIDSFHKIKEKNNMLNALLDIKFAYDQISGGDVPASTSLGIDPVDINYQKLKCIMEPLQQGCDDWNMIHQYLKNTHGATH-DLKVELIDILKLNRDNESSKF---KRHIGNRRLLWHGSGKMNFAGILGQGLRIAPPEAPVSGYMFGKGVYFADMFSKSFFYCRANAKEE-AYLLLCDVALGNVQQLMASKNVSRQTLPAGFQSVQGLGRQCPREIGSYNHPDGYTIPLG 900          
BLAST of CN189037 vs. ExPASy Swiss-Prot
Match: PARP3_ORYSJ (Poly [ADP-ribose] polymerase 3 OS=Oryza sativa subsp. japonica GN=PARP3 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.406e-35
Identity = 90/256 (35.16%), Postives = 137/256 (53.52%), Query Frame = 2
Query:   26 IDASNRFFTVIPSIHPHVIRDEDDFKSKVKM-LEALQDIEIASRLVG--FDVDSDDSLDEKYKKLRCDIAPLPHDSEDYQLIEKYLHTTHAPTHTD---WSLELEEVFSLEREGEFDKFSSYQ--RKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLG----EVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPS 757
            ++ SN++FT+ P+  P+ ++  +     V   LE ++DI +ASRL+G  F    DD L + YKKL C I  +  DSEDY++I KYL  T+ P       +S  +E ++++E         SY   +KL N++LLW G+R +N +  L  G   A    P  GYMFGK I  +D  +++A Y FT    P G ++L+   LG    E+     ++ + +  + K   KG+G+     S+   WRD VTVPCGK  PS
Sbjct:  539 MEISNKWFTLFPTTRPYTMKGYEQIADNVASGLETVRDINVASRLIGDVFGSTLDDPLSQCYKKLGCSINRVVEDSEDYKMILKYLEKTYEPVKVGDVVYSATVERIYAVESSA----LPSYDEIKKLPNKVLLWCGTRSSNLLRHLRDGFVPAVCHIPVPGYMFGKAIVCSDAAAEAALYGFTAVDRPEGYLVLAVASLGKEIQEITGTPGSEDVKRMEEKKMGVKGVGRKTTDPSEHFTWRDGVTVPCGKLVPS 790          
The following BLAST results are available for this feature:
BLAST of CN189037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PARP2_MOUSE3.579e-6149.80Poly [ADP-ribose] polymerase 2 OS=Mus musculus GN=... [more]
PARP2_HUMAN1.360e-6048.62Poly [ADP-ribose] polymerase 2 OS=Homo sapiens GN=... [more]
PARP_SARPE5.168e-6048.58Poly [ADP-ribose] polymerase OS=Sarcophaga peregri... [more]
PRP2A_ORYSJ3.350e-5948.78Poly [ADP-ribose] polymerase 2-A OS=Oryza sativa s... [more]
PARP2_ARATH1.273e-5847.58Poly [ADP-ribose] polymerase 2 OS=Arabidopsis thal... [more]
PARP_DROME2.836e-5846.96Poly [ADP-ribose] polymerase OS=Drosophila melanog... [more]
PARP2_MAIZE2.401e-5746.34Poly [ADP-ribose] polymerase 2 OS=Zea mays GN=PARP... [more]
PRP2B_ORYSJ3.833e-5546.34Poly [ADP-ribose] polymerase 2-B OS=Oryza sativa s... [more]
PME1_CAEEL2.753e-4542.80Poly(ADP-ribose) polymerase pme-1 OS=Caenorhabditi... [more]
PARP3_ORYSJ4.406e-3535.16Poly [ADP-ribose] polymerase 3 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D13_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189037 ID=CN189037; Name=CN189037; organism=Citrus sinensis; type=EST; length=767bp
AGTTTCTGTCAAAGAAAGCTTGATTATTGATGCCAGCAATAGGTTCTTTA
CTGTCATCCCTTCTATTCATCCACATGTTATACGGGACGAAGACGATTTT
AAGTCAAAGGTAAAAATGCTAGAAGCTCTGCAGGACATTGAAATAGCTTC
AAGATTAGTAGGTTTTGATGTTGATAGTGATGATTCCCTGGATGAGAAAT
ATAAGAAGCTTCGTTGTGATATTGCTCCACTTCCGCATGATAGTGAGGAT
TACCAACTGATTGAAAAGTACCTCCATACTACGCATGCCCCTACTCATAC
TGATTGGTCACTGGAACTGGAAGAAGTTTTTTCACTTGAAAGGGAAGGGG
AATTTGATAAGTTTTCTTCTTATCAAAGAAAGCTTAAAAATAGAATGCTC
CTCTGGCATGGTTCTCGGTTGACAAATTTTGTGGGAATCCTCAGCCAAGG
ACTGAGAATAGCCCCTCCTGAAGCACCGGCAACTGGCTATATGTTTGGTA
AGGGAATTTACTTTGCTGACCTAGTCAGTAAAAGTGCTCAGTATTGCTTT
ACGGATAAGAAAAATCCAGTGGGCTTAATGCTTCTGAGTGAAGTGGGCTT
GGGAGAGGTTTATGAGCTCAAGAAGGCGAAGTATATGGATAAACCACCTG
ATGGGAAGCACTCCACTAAAGGACTTGGCAAGACTGTACCACAGGAATCT
GATTTTGTGAAGTGGAGAGATGATGTCACTGTGCCATGTGGAAAACCAGC
ACCTTCAAATGTCAGGG
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