CN189037

Overview
NameCN189037
Unique NameCN189037
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189037 vs. ExPASy Swiss-Prot
Match: PARP3_ARATH (Poly [ADP-ribose] polymerase 3 OS=Arabidopsis thaliana GN=PARP3 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.282e-34
Identity = 91/259 (35.14%), Postives = 144/259 (55.60%), Query Frame = 2
Query:   14 ESLIIDASNRFFTVIPSIHPHVIRDEDDFKSKV-KMLEALQDIEIASRLVGFDVDSD---DSLDEKYKKLRCDIAPLPHDSEDYQLIEKYLHTTHAP---THTDWSLELEEVFSLEREG--EFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLG-EVYELKKAKYMDKP-PDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPS 757
            E++  D S+R+F+++ S  P  + D ++         E ++DI  ASRL+G D+  D   D L ++YKKL C I+ +  +SEDY+++ KYL TT+ P   +  ++ + ++ VF++E +     D      +KL N++LLW GSR +N +  + +G   A    P  GYMFG+ I  +D  +++A+Y FT    P G ++L+   LG EV E        K   D K   KGLG+   +ES+   WRDD+ VPCG+  PS
Sbjct:  519 EAMWADFSSRWFSLMHSTRPMRLHDVNELADHAASAFETVRDINTASRLIG-DMRGDTLDDPLSDRYKKLGCKISVVDKESEDYKMVVKYLETTYEPVKVSDVEYGVSVQNVFAVESDAIPSLDDI----KKLPNKVLLWCGSRSSNLLRHIYKGFLPAVCSLPVPGYMFGRAIVCSDAAAEAARYGFTAVDRPEGFLVLAVASLGEEVTEFTSPPEDTKTLEDKKIGVKGLGRKKTEESEHFMWRDDIKVPCGRLVPS 772          
BLAST of CN189037 vs. ExPASy Swiss-Prot
Match: PARP3_MEDTR (Putative poly [ADP-ribose] polymerase 3 OS=Medicago truncatula GN=PARP3 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 93/254 (36.61%), Postives = 134/254 (52.76%), Query Frame = 2
Query:   29 DASNRFFTVIPSIHPHVIRDEDDFKSKVKM-LEALQDIEIASRLVGFDVDS--DDSLDEKYKKLRCDIAPLPHDSEDYQLIEKYLHTTHAPTHT---DWSLELEEVFSLEREGEFDKFSSYQR--KLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLG-EVYELKKAKYMDKPPDG-------KHSTKGLGKTVPQESDFVKWRDDVTVPCG 742
            D S ++FT++ S  P + RD  +        LE ++DI +AS L+G    S  DD L + YKKL C I PL  +S DY++I KYL  T+ P      ++ + +E +F++E         SY    K+ N++LLW GSR +N +  L +G   A    P  GYMFGK I  +D  +++A+Y FT    P G ++L+   LG E+ ELK       PP+        K   KGLGK    ES+   W+DD+ VPCG
Sbjct:  510 DFSQKWFTLMHSTRPFIFRDYQEIADHAAAALEGVRDITLASHLIGDMSGSTIDDPLSDTYKKLGCSITPLEKNSNDYEMIVKYLEKTYEPVKVGDIEYGVSVENIFTVESSA----CPSYADIVKMPNKVLLWCGSRSSNLLRHLHKGFLPAICSLPVPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAIASLGNEITELK------SPPEDTTSLEEKKVGVKGLGKKKTDESEHFVWKDDIKVPCG 753          
BLAST of CN189037 vs. ExPASy Swiss-Prot
Match: PARP3_SOYBN (Poly [ADP-ribose] polymerase 3 OS=Glycine max GN=PARP3 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.308e-34
Identity = 95/259 (36.68%), Postives = 138/259 (53.28%), Query Frame = 2
Query:   14 ESLIIDASNRFFTVIPSIHPHVIRDEDDFKSKVKM-LEALQDIEIASRLVGFDVDS--DDSLDEKYKKLRCDIAPLPHDSEDYQLIEKYLHTTHAPTHT---DWSLELEEVFSLEREGEFDKFSSYQR--KLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLG-EVYELK-KAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSN 760
            E++  D S R+FT++ S  P   RD  +        LE ++DI  AS L+G    S  DD L E YKKL C I+ L   S+DY++I KYL  T+ P      ++ + +E +F+++  G      SY+   KL N++LLW GSR +N +  L +G   A    P  GYMFGK I  +D  +++A+Y FT    P G ++L+   LG E+ ELK   +      + K   KG GK    ES+   W+DD+ VPCGK   S+
Sbjct:  518 EAVWTDFSQRWFTLMHSTRPFNFRDYQEIADHAAAALEGVRDITQASHLIGDMTGSTIDDPLSETYKKLGCSISALDKSSDDYEMIVKYLEKTYEPVKVGDIEYGVSVENIFAVQTGG----CPSYEDIIKLPNKVLLWCGSRSSNLLRHLQKGFLPAICSLPIPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAIASLGNEITELKTPPEDASSLEEKKVGVKGPGKKKTDESEHFVWKDDIKVPCGKLVASD 772          
BLAST of CN189037 vs. ExPASy Swiss-Prot
Match: PARP1_ONCMA (Poly [ADP-ribose] polymerase 1 (Fragment) OS=Oncorhynchus masou GN=parp1 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 68/136 (50.00%), Postives = 96/136 (70.59%), Query Frame = 2
Query:  101 KSKVKMLEALQDIEIASRLV--GFDVDSDDSLDEKYKKLRCDIAPLPHDSEDYQLIEKYLHTTHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGK 502
            ++KV+ML+ L DIE+A  L+  G + +  D +D  Y+KL+  I  +   +++ ++I +Y+  THA TH  ++L +EE+F + REGE+ K+  +Q  L NR LLWHGSR TN+ GILSQGLRIAPPEAP TGYMFGK
Sbjct:    1 QAKVEMLDNLLDIEVAYSLLKGGAEDNKKDPIDINYEKLKTKIEVVDKTTKEAEIILQYVKNTHAATHNTYTLVVEEIFKIVREGEYQKYRPFQ-DLPNRQLLWHGSRATNYAGILSQGLRIAPPEAPVTGYMFGK 135          
BLAST of CN189037 vs. ExPASy Swiss-Prot
Match: PARP3_HUMAN (Poly [ADP-ribose] polymerase 3 OS=Homo sapiens GN=PARP3 PE=1 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 3.499e-24
Identity = 88/262 (33.59%), Postives = 123/262 (46.95%), Query Frame = 2
Query:   29 DASNRFFTVIPS----IHPHVIRDEDDFKSKVKMLEALQDIEIASRLVGFDVDSDD------SLDEKYKKLRCDIAPLPHDSEDYQLIEKYLHTT----HAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDK--KNPVGLMLLSEVGLGEVYELKKAK-YMDKPPDGKHSTKGLGKTVP---QESDFVKWRDDVTVPCGKPAP 754
            + S+ F+TVIP       P  I   +  ++K  ML  L DIE+A  L                LD  Y+ L+C +  L   + +Y++I+ YL  T      PT       L+ ++ + +EGE D+F ++  KL NR LLWHG+ +     IL+ GLRI     P +G   GKGIYFA   SKSA Y    K   + VG M L EV LG  + +      +  PP G  S    G T P   Q+++       V VP G+P P
Sbjct:  252 ELSSHFYTVIPHNFGHSQPPPINSPELLQAKKDMLLVLADIELAQALQAVSEQEKTVEEVPHPLDRDYQLLKCQLQLLDSGAPEYKVIQTYLEQTGSNHRCPT-------LQHIWKVNQEGEEDRFQAHS-KLGNRKLLWHGTNMAVVAAILTSGLRI----MPHSGGRVGKGIYFASENSKSAGYVIGMKCGAHHVGYMFLGEVALGREHHINTDNPSLKSPPPGFDSVIARGHTEPDPTQDTELELDGQQVVVPQGQPVP 501          
BLAST of CN189037 vs. ExPASy Swiss-Prot
Match: PARP4_HUMAN (Poly [ADP-ribose] polymerase 4 OS=Homo sapiens GN=PARP4 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.740e-13
Identity = 53/177 (29.94%), Postives = 89/177 (50.28%), Query Frame = 2
Query:  197 KYKKLRCDIAPLPHDSEDYQLIEKYLHTTHAPTHTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYM------FGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKY-MDKPPDGKHSTKGLGKTVPQESDF 706
            KY+ LRC I  +  ++E++  + K +   H   H+   +++ ++F + R  E  +F S   KL N   L HGS + N VGIL +GL + P      G         G GIYF+D +S S +Y    + +   L+L+ +V LG+  +L +  + + + P G  S  G+ +T    +DF
Sbjct:  374 KYRALRCKIEHVEQNTEEFLRVRKEVLQNH---HSKSPVDVLQIFRVGRVNETTEFLS---KLGNVRPLLHGSPVQNIVGILCRGL-LLPKVVEDRGVQRTDVGNLGSGIYFSDSLSTSIKYSHPGETDGTRLLLICDVALGKCMDLHEKDFSLTEAPPGYDSVHGVSQTASVTTDF 543          
BLAST of CN189037 vs. ExPASy Swiss-Prot
Match: PME5_CAEEL (Poly(ADP-ribose) polymerase pme-5 OS=Caenorhabditis elegans GN=pme-5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.085e-13
Identity = 54/175 (30.86%), Postives = 82/175 (46.86%), Query Frame = 2
Query:  119 LEALQDIEIASRLV-GFDVDSD-DSLDEKYKKLRCDIAPLPHDSEDYQLIEKYLHTTHAP-THTDWSLELEEVFSLEREGEFDKFSSYQRKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVGLGEVYELKKAKY 634
            L   Q+IE A+RL+   +   D D +D     ++C+      DS+  Q + +++H +          LE+  + S E+   F+ F +      N+  LWHG++ TN + IL  G  I PP A   G +FG GIY AD   KS  YC       +  ML+ +  LG+V  L    Y
Sbjct: 2031 LNRCQEIETATRLLCAAEFRQDLDRVDYIRSAIQCEYRLETPDSDISQRLLQWIHNSGGKQAKVKMILEISPMLSTEK---FEPFVNDD----NQKFLWHGTKATNLMSILKNGFLIDPPSACKNGNLFGSGIYLADSFEKSTHYC-QPSAGGINYMLVCQTALGKVRTLDTIPY 2197          
The following BLAST results are available for this feature:
BLAST of CN189037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PARP3_ARATH1.282e-3435.14Poly [ADP-ribose] polymerase 3 OS=Arabidopsis thal... [more]
PARP3_MEDTR4.871e-3436.61Putative poly [ADP-ribose] polymerase 3 OS=Medicag... [more]
PARP3_SOYBN8.308e-3436.68Poly [ADP-ribose] polymerase 3 OS=Glycine max GN=P... [more]
PARP1_ONCMA2.263e-3150.00Poly [ADP-ribose] polymerase 1 (Fragment) OS=Oncor... [more]
PARP3_HUMAN3.499e-2433.59Poly [ADP-ribose] polymerase 3 OS=Homo sapiens GN=... [more]
PARP4_HUMAN4.740e-1329.94Poly [ADP-ribose] polymerase 4 OS=Homo sapiens GN=... [more]
PME5_CAEEL8.085e-1330.86Poly(ADP-ribose) polymerase pme-5 OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D13_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189037 ID=CN189037; Name=CN189037; organism=Citrus sinensis; type=EST; length=767bp
AGTTTCTGTCAAAGAAAGCTTGATTATTGATGCCAGCAATAGGTTCTTTA
CTGTCATCCCTTCTATTCATCCACATGTTATACGGGACGAAGACGATTTT
AAGTCAAAGGTAAAAATGCTAGAAGCTCTGCAGGACATTGAAATAGCTTC
AAGATTAGTAGGTTTTGATGTTGATAGTGATGATTCCCTGGATGAGAAAT
ATAAGAAGCTTCGTTGTGATATTGCTCCACTTCCGCATGATAGTGAGGAT
TACCAACTGATTGAAAAGTACCTCCATACTACGCATGCCCCTACTCATAC
TGATTGGTCACTGGAACTGGAAGAAGTTTTTTCACTTGAAAGGGAAGGGG
AATTTGATAAGTTTTCTTCTTATCAAAGAAAGCTTAAAAATAGAATGCTC
CTCTGGCATGGTTCTCGGTTGACAAATTTTGTGGGAATCCTCAGCCAAGG
ACTGAGAATAGCCCCTCCTGAAGCACCGGCAACTGGCTATATGTTTGGTA
AGGGAATTTACTTTGCTGACCTAGTCAGTAAAAGTGCTCAGTATTGCTTT
ACGGATAAGAAAAATCCAGTGGGCTTAATGCTTCTGAGTGAAGTGGGCTT
GGGAGAGGTTTATGAGCTCAAGAAGGCGAAGTATATGGATAAACCACCTG
ATGGGAAGCACTCCACTAAAGGACTTGGCAAGACTGTACCACAGGAATCT
GATTTTGTGAAGTGGAGAGATGATGTCACTGTGCCATGTGGAAAACCAGC
ACCTTCAAATGTCAGGG
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