CN188923

Overview
NameCN188923
Unique NameCN188923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6751 contig Csv1_Contig6751:495..1059. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188923 vs. ExPASy Swiss-Prot
Match: ILVG_ECOLI (Acetolactate synthase isozyme 2 large subunit OS=Escherichia coli (strain K12) GN=ilvG PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 5.125e-17
Identity = 45/110 (40.91%), Postives = 68/110 (61.82%), Query Frame = -3
Query:  234 KVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGILGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 563
            K ++LP+KI+LL+NQ LGMV QW+  F++   + T L D        P+ L  A A GI G  +TRK  + AA+ TML++ GPYLL V +   E+V P++P G +  +++
Sbjct:  442 KRKQLPLKIVLLDNQRLGMVRQWQQLFFQERYSETTLTDN-------PDFLMLASAFGIHGQHITRKDQVEAALDTMLNSDGPYLLHVSIDELENVWPLVPPGASNSEML 544          
BLAST of CN188923 vs. ExPASy Swiss-Prot
Match: ILVB_SCHPO (Acetolactate synthase, mitochondrial OS=Schizosaccharomyces pombe GN=ilv1 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.947e-16
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = -3
Query:  234 LPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGILGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 551
            +P+KIL+LNN+  GMV QW++ FY+   +HT+  +P        N +K A+A GI   +V ++ DL   ++  L T GP L++V+V  +EHV P +P G A    I
Sbjct:  566 IPVKILILNNEEQGMVTQWQNLFYEKRYSHTHQKNP--------NFVKLADAMGIKALRVEKREDLAKKMKEFLSTKGPVLMEVLVAQKEHVYPFVPGGKALHQFI 663          
BLAST of CN188923 vs. ExPASy Swiss-Prot
Match: ILVB_YEAST (Acetolactate synthase catalytic subunit, mitochondrial OS=Saccharomyces cerevisiae GN=ILV2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.109e-14
Identity = 39/105 (37.14%), Postives = 62/105 (59.05%), Query Frame = -3
Query:  234 PIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGILGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 548
            P+KIL+LNN+  GMV QW+  FY+   +HT+        ++ P+ +K AEA G+ G +V ++ +L A ++  + T GP LL+V V  +  VLPM+  G    + I
Sbjct:  569 PVKILILNNEEQGMVTQWQSLFYEHRYSHTH--------QLNPDFIKLAEAMGLKGLRVKKQEELDAKLKEFVSTKGPVLLEVEVDKKVPVLPMVAGGSGLDEFI 665          
BLAST of CN188923 vs. ExPASy Swiss-Prot
Match: ILVB_CYACA (Acetolactate synthase large subunit OS=Cyanidium caldarium GN=ilvB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.543e-13
Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = -3
Query:  255 KLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGILGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSG 554
            +L IKI ++NNQ  GMV QW+  FY    AH+ +          P+ ++ A + GI G +VT   DL++ I+ ++ TPGP L+D IV   E+  PMI  G
Sbjct:  474 ELDIKIFIINNQWQGMVRQWQQAFYDQRYAHSNMAKGQ------PDFVQLANSYGIRGIRVTTSKDLKSKIERIISTPGPLLIDCIVATSENCYPMIAPG 567          
BLAST of CN188923 vs. ExPASy Swiss-Prot
Match: ILVB_PORYE (Acetolactate synthase large subunit OS=Porphyra yezoensis GN=ilvB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.015e-13
Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = -3
Query:  255 KLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGILGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSG 554
            +LP+KI+++NN+  GMV QW+  FY    +H      SR +E  P+  K AEA GI    +  + ++++A+Q  +D PGP LLD  V   E+  PM+  G
Sbjct:  472 QLPVKIIIINNRWQGMVRQWQQAFYGERYSH------SRMTEGAPDFQKLAEAFGIKAFTINNRQNMQSALQVAIDYPGPVLLDCQVTENENCYPMVAPG 565          
BLAST of CN188923 vs. ExPASy Swiss-Prot
Match: ILVB_PORUM (Acetolactate synthase large subunit OS=Porphyra umbilicalis GN=ilvB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.000e-12
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = -3
Query:  255 KLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGILGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSG 554
            KLPIKI+++NN+  GMV QW+  FY    +H      SR +E  PN  K AEA GI    V  + ++ ++++  +  PGP LLD  V   E+  PM+  G
Sbjct:  472 KLPIKIVIINNRWQGMVRQWQQAFYGERYSH------SRMTEGAPNFQKLAEAFGIKAFTVNNRQNMESSLKDAMKYPGPVLLDCQVTENENCYPMVAPG 565          
BLAST of CN188923 vs. ExPASy Swiss-Prot
Match: ILVB_PORPU (Acetolactate synthase large subunit OS=Porphyra purpurea GN=ilvB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.000e-12
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = -3
Query:  255 KLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGILGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSG 554
            KLPIKI+++NN+  GMV QW+  FY    +H      SR +E  PN  K AEA GI    V  + ++ ++++  +  PGP LLD  V   E+  PM+  G
Sbjct:  472 KLPIKIVIINNRWQGMVRQWQQAFYGERYSH------SRMTEGAPNFQKLAEAFGIKAFTVNNRQNMESSLKDAMKYPGPVLLDCQVTENENCYPMVAPG 565          
BLAST of CN188923 vs. ExPASy Swiss-Prot
Match: ILVB_GUITH (Acetolactate synthase large subunit OS=Guillardia theta GN=ilvB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.202e-11
Identity = 36/99 (36.36%), Postives = 54/99 (54.55%), Query Frame = -3
Query:  255 LPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGILGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSG 551
            LPIKI ++NN+  GMV QW+  FY    +H+ +   +      PN  K AEA G+   ++  + DL+  I+  LD  GP L+D+ V   E+  PM+  G
Sbjct:  472 LPIKIFIINNKWQGMVRQWQQAFYGERYSHSNMEKGA------PNFTKVAEAFGLRSLKIKSRNDLKLRIKEALDYDGPILVDIQVIADENCYPMVAPG 564          
BLAST of CN188923 vs. ExPASy Swiss-Prot
Match: ILVB_CORGL (Acetolactate synthase large subunit OS=Corynebacterium glutamicum GN=ilvB PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11
Identity = 37/109 (33.94%), Postives = 59/109 (54.13%), Query Frame = -3
Query:  237 VEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGILGAQVTRKADLRAAIQTMLD-TPGPYLLDVIVPHQEHVLPMIPSGGAFKDV 560
            VE  PIKI L+NN +LGMV QW+  FY+   ++T L     + E  P+ +  +E  G +  +VT+  ++  AIQ   +    P ++D IV     V PM+ +G +  D+
Sbjct:  482 VEGFPIKIALINNGNLGMVRQWQTLFYEGRYSNTKL---RNQGEYMPDFVTLSEGLGCVAIRVTKAEEVLPAIQKAREINDRPVVIDFIVGEDAQVWPMVSAGSSNSDI 587          
BLAST of CN188923 vs. ExPASy Swiss-Prot
Match: ILVB_BACSU (Acetolactate synthase large subunit OS=Bacillus subtilis GN=ilvB PE=1 SV=4)

HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11
Identity = 32/106 (30.19%), Postives = 60/106 (56.60%), Query Frame = -3
Query:  234 LPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGILGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 551
            LP+K+++LNN  LGMV QW++ FY+   + +            P+ +K +EA GI G +++ +A+ +  ++  L +  P ++DV V  +E V PM+  G    +++
Sbjct:  472 LPVKVVILNNACLGMVRQWQEIFYEERYSESKFASQ-------PDFVKLSEAYGIKGIRISSEAEAKEKLEEALTSREPVVIDVRVASEEKVFPMVAPGKGLHEMV 570          
The following BLAST results are available for this feature:
BLAST of CN188923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
ILVG_ECOLI5.125e-1740.91Acetolactate synthase isozyme 2 large subunit OS=E... [more]
ILVB_SCHPO1.947e-1638.68Acetolactate synthase, mitochondrial OS=Schizosacc... [more]
ILVB_YEAST3.109e-1437.14Acetolactate synthase catalytic subunit, mitochond... [more]
ILVB_CYACA1.543e-1339.00Acetolactate synthase large subunit OS=Cyanidium c... [more]
ILVB_PORYE2.015e-1338.00Acetolactate synthase large subunit OS=Porphyra ye... [more]
ILVB_PORUM1.000e-1239.00Acetolactate synthase large subunit OS=Porphyra um... [more]
ILVB_PORPU1.000e-1239.00Acetolactate synthase large subunit OS=Porphyra pu... [more]
ILVB_GUITH4.202e-1136.36Acetolactate synthase large subunit OS=Guillardia ... [more]
ILVB_CORGL9.361e-1133.94Acetolactate synthase large subunit OS=Corynebacte... [more]
ILVB_BACSU9.361e-1130.19Acetolactate synthase large subunit OS=Bacillus su... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001A19_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188923 ID=CN188923; Name=CN188923; organism=Citrus sinensis; type=EST; length=565bp
TTTTTTTTTTTTTTACTCAGACACAAACAAATTATAATAACATTGTAACT
CATAGAGTTTGTTTGTTAAACAAACACTAGTTCCATTAAAACTGACACCT
GAACTAAAAACACTGCCACACACTCATAGGTAAGTTAAGCCTGCAACTCA
AAAGGAACATAAATACATAGCCAAGAAGGCATCTATGCTGCTTCAGCTTG
TCGTTAATACTGCGTTCTTCCATCACCTTCAGTGATCACATCTTTAAAAG
CTCCACCACTGGGGATCATAGGCAGGACATGCTCTTGATGAGGAACGATG
ACGTCCAGAAGGTATGGTCCAGGAGTGTCCAACATAGTCTGAATTGCGGC
TCTCAAATCTGCCTTCCTTGTTACTTGTGCTCCAAGTATTCCACAGGCTT
CTGCAAACTTCAACATATTCGGAAATATTTCAGACTCTCTTGATGGATCT
CCCAAATACGTGTGAGCCCTATTTGCCTTGTAAAACCGATCCTCCCATTG
CATCACCATGCCCAAGTGCTGATTATTCAACAGCAATATCTTGATGGGGA
GTTTCTCTACCTTAA
back to top