CN188714

Overview
NameCN188714
Unique NameCN188714
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2682 contig Csv1_Contig2682:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188714 vs. ExPASy Swiss-Prot
Match: YY46_ANASP (Uncharacterized WD repeat-containing protein alr3466 OS=Anabaena sp. (strain PCC 7120) GN=alr3466 PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 51/181 (28.18%), Postives = 86/181 (47.51%), Query Frame = 3
Query:    3 LRIHGLKSGKLLNYFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTPQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 545
            +R+  + S K L   +GH+S+VN  +F  DGS + + SSD TV++W++ S+ CL TF      +G  + VNSV     NPD  ++ + +S   +        K   + +       +   +P G  +     D+ +  +   S K  H  + H   V  VT  P   +LA+  +D T++LW
Sbjct: 1182 VRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTF------QGHTSWVNSVVF---NPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLW 1353          

HSP 2 Score: 74.7146 bits (182), Expect = 4.850e-13
Identity = 52/181 (28.73%), Postives = 86/181 (47.51%), Query Frame = 3
Query:    3 LRIHGLKSGKLLNYFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTPQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 545
            +R+  + S K L  F+GH+S+VN  +F  DGS + + SSD TV++WD+ S+ CL TF      +G    VNSV     NPD  ++ + +    +   +    K   + +       +   SP G  +    +D+ +  +S  SG+  +    H   V  V   P   +LA+   D T++LW
Sbjct: 1224 VRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTF------QGHTNWVNSVAF---NPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLW 1395          

HSP 3 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 50/184 (27.17%), Postives = 90/184 (48.91%), Query Frame = 3
Query:    3 LRIHGLKSGKLLNYFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMT---PQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 545
            +R+  + S K L+ F+GH+++VN   F  DGS + + S D TV++W++ S+ CL TF+      G  + V+SV     +PD  ++ + +    +       G+ + +F       G  +    SP G  +     D+ +  +S  SGK  + ++ H   V  +   P   LLA+  +D T++LW
Sbjct: 1266 VRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQ------GHTSWVSSVTF---SPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVI---FSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLW 1437          

HSP 4 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 47/182 (25.82%), Postives = 85/182 (46.70%), Query Frame = 3
Query:    3 LRIHGLKSGKLLNYFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTPQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 548
            +R+  + S K L   +GH+++VN   F+ DG+ + + S D TV++WD+ S+ CL        L+G  + VNSV     NPD   + + +S   +   +    K   + +       +   +P G  +     D+ +  +   S K  H  + H   V  V  +P  ++LA+   D T++LW+
Sbjct: 1140 VRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYI------LQGHTSWVNSVVF---NPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWE 1312          
BLAST of CN188714 vs. ExPASy Swiss-Prot
Match: WDR5_RAT (WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.713e-13
Identity = 53/185 (28.65%), Postives = 88/185 (47.57%), Query Frame = 3
Query:    3 LRIHGLKSGKLLNYFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMT-PQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYG--EDCTMKLWK 548
            +RI  +K+GK L     HS  V+   F  DGS +V++S D   ++WD  S  CL+T      L   D    S   F  N  +I+     +++ +    +G+ +K+++  K E     A      G+WI    ED  +Y ++ Q+ ++   ++ H   VI    HP  N++A+     D T+KLWK
Sbjct:  153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT------LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331          
BLAST of CN188714 vs. ExPASy Swiss-Prot
Match: WDR5_MOUSE (WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.713e-13
Identity = 53/185 (28.65%), Postives = 88/185 (47.57%), Query Frame = 3
Query:    3 LRIHGLKSGKLLNYFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMT-PQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYG--EDCTMKLWK 548
            +RI  +K+GK L     HS  V+   F  DGS +V++S D   ++WD  S  CL+T      L   D    S   F  N  +I+     +++ +    +G+ +K+++  K E     A      G+WI    ED  +Y ++ Q+ ++   ++ H   VI    HP  N++A+     D T+KLWK
Sbjct:  153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT------LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331          
BLAST of CN188714 vs. ExPASy Swiss-Prot
Match: WDR5_HUMAN (WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.713e-13
Identity = 53/185 (28.65%), Postives = 88/185 (47.57%), Query Frame = 3
Query:    3 LRIHGLKSGKLLNYFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMT-PQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYG--EDCTMKLWK 548
            +RI  +K+GK L     HS  V+   F  DGS +V++S D   ++WD  S  CL+T      L   D    S   F  N  +I+     +++ +    +G+ +K+++  K E     A      G+WI    ED  +Y ++ Q+ ++   ++ H   VI    HP  N++A+     D T+KLWK
Sbjct:  153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT------LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331          
BLAST of CN188714 vs. ExPASy Swiss-Prot
Match: WDR5_BOVIN (WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.713e-13
Identity = 53/185 (28.65%), Postives = 88/185 (47.57%), Query Frame = 3
Query:    3 LRIHGLKSGKLLNYFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMT-PQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYG--EDCTMKLWK 548
            +RI  +K+GK L     HS  V+   F  DGS +V++S D   ++WD  S  CL+T      L   D    S   F  N  +I+     +++ +    +G+ +K+++  K E     A      G+WI    ED  +Y ++ Q+ ++   ++ H   VI    HP  N++A+     D T+KLWK
Sbjct:  153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT------LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331          
BLAST of CN188714 vs. ExPASy Swiss-Prot
Match: WDR5_XENTR (WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.334e-13
Identity = 53/185 (28.65%), Postives = 88/185 (47.57%), Query Frame = 3
Query:    3 LRIHGLKSGKLLNYFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMT-PQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYG--EDCTMKLWK 548
            +RI  +K+GK L     HS  V+   F  DGS +V++S D   ++WD  S  CL+T      L   D    S   F  N  +I+     +++ +    +G+ +K+++  K E     A      G+WI    ED  +Y ++ Q+ ++   ++ H   VI    HP  N++A+     D T+KLWK
Sbjct:  153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT------LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTCHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEVVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331          
BLAST of CN188714 vs. ExPASy Swiss-Prot
Match: WDS_DROME (Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.272e-13
Identity = 52/185 (28.11%), Postives = 88/185 (47.57%), Query Frame = 3
Query:    3 LRIHGLKSGKLLNYFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMT-PQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYG--EDCTMKLWK 548
            +RI  +++GK L     HS  V+   F  DGS +V++S D   ++WD  S  CL+T      L   D    S   F  N  +I+     +++ +    +G+ +K+++  K E     A      G+WI    ED  +Y ++ QS ++   ++ H   V+    HP  N++A+     D T+KLWK
Sbjct:  180 VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT------LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPTENIIASAALENDKTIKLWK 358          
BLAST of CN188714 vs. ExPASy Swiss-Prot
Match: Y163_SYNY3 (Uncharacterized WD repeat-containing protein sll0163 OS=Synechocystis sp. (strain PCC 6803) GN=sll0163 PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.195e-11
Identity = 50/178 (28.09%), Postives = 79/178 (44.38%), Query Frame = 3
Query:   21 KSGKLLNYFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTPQGQVVKSFSSGK---REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 545
            K G LL   RGH   V DA F+ DG  V T S+D T + WD+   D +        L G    V + H  PK  D ++  ++  +  + T +G+ V   +  +   REG        SP G+WI     D+    ++    KL  +++ H+  V+ V   P    + T  +D T ++W
Sbjct: 1289 KEGTLLTILRGHQKEVYDADFSADGRFVFTVSADQTARQWDISQKDTI-------TLTGHSHWVRNAHFNPKG-DRLLTVSRDKTARLWTTEGECVAVLADHQGWVREGQ------FSPDGQWIVTGSADKTAQLWNVLGKKLT-VLRGHQDAVLNVRFSPDSQYIVTASKDGTARVW 1451          
BLAST of CN188714 vs. ExPASy Swiss-Prot
Match: WDR5B_PONAB (WD repeat-containing protein 5B OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 51/184 (27.72%), Postives = 85/184 (46.20%), Query Frame = 3
Query:    3 LRIHGLKSGKLLNYFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMT-PQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYG--EDCTMKLW 545
            ++I  +K+GK L     HS  V+   F   GS +V+ S D   ++WD  S  CL+T      L   D    S   F  N  +I+     +++ +    +G+ +K+++  K E     A      G+WI    ED  +Y ++ Q+ ++   ++ H   VI    HP  NL+A+     D T+KLW
Sbjct:  149 VKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKT------LVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENLIASAALENDKTIKLW 326          
BLAST of CN188714 vs. ExPASy Swiss-Prot
Match: WDR5B_HUMAN (WD repeat-containing protein 5B OS=Homo sapiens GN=WDR5B PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 51/184 (27.72%), Postives = 85/184 (46.20%), Query Frame = 3
Query:    3 LRIHGLKSGKLLNYFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMT-PQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYG--EDCTMKLW 545
            ++I  +K+GK L     HS  V+   F   GS +V+ S D   ++WD  S  CL+T      L   D    S   F  N  +I+     +++ +    +G+ +K+++  K E     A      G+WI    ED  +Y ++ Q+ ++   ++ H   VI    HP  NL+A+     D T+KLW
Sbjct:  149 VKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKT------LVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENLIASAALENDKTIKLW 326          
The following BLAST results are available for this feature:
BLAST of CN188714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
YY46_ANASP1.276e-1328.18Uncharacterized WD repeat-containing protein alr34... [more]
WDR5_RAT3.713e-1328.65WD repeat-containing protein 5 OS=Rattus norvegicu... [more]
WDR5_MOUSE3.713e-1328.65WD repeat-containing protein 5 OS=Mus musculus GN=... [more]
WDR5_HUMAN3.713e-1328.65WD repeat-containing protein 5 OS=Homo sapiens GN=... [more]
WDR5_BOVIN3.713e-1328.65WD repeat-containing protein 5 OS=Bos taurus GN=WD... [more]
WDR5_XENTR6.334e-1328.65WD repeat-containing protein 5 OS=Xenopus tropical... [more]
WDS_DROME8.272e-1328.11Protein will die slowly OS=Drosophila melanogaster... [more]
Y163_SYNY31.195e-1128.09Uncharacterized WD repeat-containing protein sll01... [more]
WDR5B_PONAB2.661e-1127.72WD repeat-containing protein 5B OS=Pongo abelii PE... [more]
WDR5B_HUMAN2.661e-1127.72WD repeat-containing protein 5B OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006K05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006K05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188714 ID=CN188714; Name=CN188714; organism=Citrus sinensis; type=EST; length=671bp
CTTTAAGAATTCATGGACTAAAATCTGGGAAATTGTTGAACTATTTCCGA
GGTCATTCGTCTTACGTAAATGATGCCATATTCACAAATGATGGCAGCCG
TGTCGTTACTGCCTCAAGTGATTGTACAGTAAAGGTCTGGGACCTGAAGA
GTACTGATTGCCTCCAGACATTTAAGCCACCACCTCCTTTGAGGGGAGGT
GATGCTTCAGTGAACTCTGTCCATTTATTCCCAAAGAATCCTGATCACAT
AGTCGTATGTAATAAGACATCCTCAATATACATAATGACTCCTCAAGGAC
AGGTTGTGAAGAGTTTTTCTTCTGGTAAAAGAGAAGGTGGAGATTTTGTT
GCTGCTTGTGTTTCACCGAAAGGTGAATGGATCTATTGTGTTGGTGAAGA
CAGGAACTTGTACTGCTTCAGCCATCAGTCTGGTAAACTAGAGCATCTAA
TGAAGGTCCATGAAAAGGATGTAATTGGTGTGACTCATCATCCCCATAGA
AACCTTCTGGCAACATATGGTGAAGATTGCACAATGAAATTATGGAAGCC
TTGATTCCCTGTATTTGCTTCCGTTGAAATGAAAAATGTTTCTGTAATTT
CTTGGAATGTTGTCTTCATTCATTAGACCCATTATTCACTGGGGGAGCAT
GGGTTGGAAGAACCAAATTTC
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