CN188703

Overview
NameCN188703
Unique NameCN188703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length352
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1351 contig Csv1_Contig1351:1..348. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_MOUSE (40S ribosomal protein S16 OS=Mus musculus GN=Rps16 PE=2 SV=4)

HSP 1 Score: 116.316 bits (290), Expect = 4.890e-26
Identity = 53/85 (62.35%), Postives = 70/85 (82.35%), Query Frame = 1
Query:   85 ESVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            +SVQ F RK TA AV +CKRG GLIK+NG P+E+++P  L++K  EP+LLLG+ RF GVD+++R +GGGH +QIYAIRQSISK+L
Sbjct:    8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKAL 92          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_HUMAN (40S ribosomal protein S16 OS=Homo sapiens GN=RPS16 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 4.890e-26
Identity = 53/85 (62.35%), Postives = 70/85 (82.35%), Query Frame = 1
Query:   85 ESVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            +SVQ F RK TA AV +CKRG GLIK+NG P+E+++P  L++K  EP+LLLG+ RF GVD+++R +GGGH +QIYAIRQSISK+L
Sbjct:    8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKAL 92          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_BOVIN (40S ribosomal protein S16 OS=Bos taurus GN=RPS16 PE=2 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.890e-26
Identity = 53/85 (62.35%), Postives = 70/85 (82.35%), Query Frame = 1
Query:   85 ESVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            +SVQ F RK TA AV +CKRG GLIK+NG P+E+++P  L++K  EP+LLLG+ RF GVD+++R +GGGH +QIYAIRQSISK+L
Sbjct:    8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKAL 92          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_ICTPU (40S ribosomal protein S16 OS=Ictalurus punctatus GN=rps16 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.423e-25
Identity = 52/85 (61.18%), Postives = 69/85 (81.18%), Query Frame = 1
Query:   85 ESVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            +SVQ F RK TA AV +CKRG GLIK+NG P+E ++P  L++K  EP+LLLG+ RF GVD+++R +GGGH +Q+YAIRQSISK+L
Sbjct:    8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQVYAIRQSISKAL 92          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_HETFO (40S ribosomal protein S16 OS=Heteropneustes fossilis GN=rps16 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.169e-25
Identity = 51/85 (60.00%), Postives = 69/85 (81.18%), Query Frame = 1
Query:   85 ESVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            +SVQ F RK TA AV +CKRG GLIK+NG P+E ++P  L++K  EP+LLLG+ RF GVD+++R +GGGH +Q+YAIRQ+ISK+L
Sbjct:    8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQVYAIRQAISKAL 92          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_DROME (40S ribosomal protein S16 OS=Drosophila melanogaster GN=RpS16 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.221e-25
Identity = 50/85 (58.82%), Postives = 69/85 (81.18%), Query Frame = 1
Query:   85 ESVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            ++VQ F RK TA AV YCKRG GL+K+NG P+E ++P +L++K  EP+LLLG+ +F GVD+++R  GGGH +QIYAIRQ+ISK+L
Sbjct:   10 QAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLLGKEKFAGVDIRVRVSGGGHVAQIYAIRQAISKAL 94          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_SCHPO (40S ribosomal protein S16 OS=Schizosaccharomyces pombe GN=rps16a PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.204e-24
Identity = 51/85 (60.00%), Postives = 66/85 (77.65%), Query Frame = 1
Query:   85 ESVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            +SVQCF +K  A AV +CK G+GLIK+NG P+ LV P ILR K +EPIL+ G  +F GVD+++R  GGGH SQIYAIRQ+ISK++
Sbjct:    2 QSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISKAI 86          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_SPOFR (40S ribosomal protein S16 OS=Spodoptera frugiperda GN=RpS16 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.683e-24
Identity = 48/85 (56.47%), Postives = 71/85 (83.53%), Query Frame = 1
Query:   85 ESVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            ++VQ F RK TA AV YCKRG G++++NG P++LV+P +L++K  EPILLLG+ +F+GVD+++  +GGGH +Q+YAIRQ+ISK+L
Sbjct:   13 QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKAL 97          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_AEDAE (40S ribosomal protein S16 OS=Aedes aegypti GN=RpS16 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.504e-24
Identity = 49/84 (58.33%), Postives = 69/84 (82.14%), Query Frame = 1
Query:   88 SVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            +VQ F RK TA AV YCKRG+GL+++NG P++ ++P +L++K  EP+LLLG+ +F GVD++IR  GGGH +QIYAIRQ+ISK+L
Sbjct:   11 AVQVFGRKKTATAVAYCKRGKGLLRVNGRPLDQIEPKVLQYKLQEPLLLLGKEKFAGVDIRIRVSGGGHVAQIYAIRQAISKAL 94          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_CAEEL (40S ribosomal protein S16 OS=Caenorhabditis elegans GN=rps-16 PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 1.332e-23
Identity = 49/85 (57.65%), Postives = 68/85 (80.00%), Query Frame = 1
Query:   85 ESVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            +SVQ F RK TA AV +CK+G+GLIK+NG P+E ++P ILR K  EP+LL+G+ RF  VD++IR  GGGH +QIYA+RQ+++K+L
Sbjct:    6 QSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDVDIRIRVSGGGHVAQIYAVRQALAKAL 90          
The following BLAST results are available for this feature:
BLAST of CN188703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
RS16_MOUSE4.890e-2662.3540S ribosomal protein S16 OS=Mus musculus GN=Rps16... [more]
RS16_HUMAN4.890e-2662.3540S ribosomal protein S16 OS=Homo sapiens GN=RPS16... [more]
RS16_BOVIN4.890e-2662.3540S ribosomal protein S16 OS=Bos taurus GN=RPS16 P... [more]
RS16_ICTPU1.423e-2561.1840S ribosomal protein S16 OS=Ictalurus punctatus G... [more]
RS16_HETFO3.169e-2560.0040S ribosomal protein S16 OS=Heteropneustes fossil... [more]
RS16_DROME9.221e-2558.8240S ribosomal protein S16 OS=Drosophila melanogast... [more]
RS16_SCHPO1.204e-2460.0040S ribosomal protein S16 OS=Schizosaccharomyces p... [more]
RS16_SPOFR2.683e-2456.4740S ribosomal protein S16 OS=Spodoptera frugiperda... [more]
RS16_AEDAE3.504e-2458.3340S ribosomal protein S16 OS=Aedes aegypti GN=RpS1... [more]
RS16_CAEEL1.332e-2357.6540S ribosomal protein S16 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006J18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188703 ID=CN188703; Name=CN188703; organism=Citrus sinensis; type=EST; length=352bp
ACGTTTTTCAAGCACCCAGGACTCACACAACACAAACACACACTAAGCAC
TGATCCCAACCTGGCTACTGCTGCTCCTAAAACCGAGTCCGTGCAATGCT
TCCGCCGCAAAAATACGGCGGTGGCAGTAACCTACTGCAAGCGCGGCCGC
GGCTTGATCAAGATCAACGGCTGCCCAATCGAGCTTGTGGACCCATAGAT
CCTGCGTTTCAAGGCCTTCGAGCCGATCCTATTGCTCGGACGACACCGTT
TCAACGGAGTAGACATGAAGATCCGCGGCCAGGGCGGAGGCCACACATCT
CAGATCTACGCTATACGCCAGAGCATCTCCAAGAGCCTTGGTCGCGTTTT
AT
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