CN188703

Overview
NameCN188703
Unique NameCN188703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length352
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1351 contig Csv1_Contig1351:1..348. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_CANAL (40S ribosomal protein S16 OS=Candida albicans GN=RPS16 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.739e-23
Identity = 50/86 (58.14%), Postives = 66/86 (76.74%), Query Frame = 1
Query:   82 TESVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            T+SVQ F +K TA AV + K G+GLIKING PI LV P ILRFK +EP+ L+G  +F G+D++++  GGGH SQ+YAIRQ+I+K L
Sbjct:    3 TQSVQTFGKKKTATAVAHVKAGKGLIKINGSPITLVQPEILRFKVYEPLTLVGLDKFQGIDIRVKVTGGGHVSQVYAIRQAIAKGL 88          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_YEAST (40S ribosomal protein S16 OS=Saccharomyces cerevisiae GN=RPS16A PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.127e-22
Identity = 48/84 (57.14%), Postives = 66/84 (78.57%), Query Frame = 1
Query:   88 SVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            SVQ F +K +A AV + K G+GLIK+NG PI LV+P ILRFK +EP+LL+G  +F+ +D+++R  GGGH SQ+YAIRQ+I+K L
Sbjct:    6 SVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFSNIDIRVRVTGGGHVSQVYAIRQAIAKGL 89          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_DEBHA (40S ribosomal protein S16 OS=Debaryomyces hansenii GN=RPS16 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.472e-22
Identity = 48/86 (55.81%), Postives = 64/86 (74.42%), Query Frame = 1
Query:   82 TESVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            T SVQ F +K TA AV + K G+GLIK+NG PI LV P ILRFK +EP+ L+G  +F  +D++++  GGGH SQ+YAIRQ+I+K L
Sbjct:    3 TPSVQTFGKKKTATAVAHVKAGKGLIKVNGAPITLVQPEILRFKVYEPLTLVGLDKFQNIDIRVKVSGGGHVSQVYAIRQAIAKGL 88          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_SACEX (40S ribosomal protein S16 OS=Saccharomyces exiguus GN=RPS16 PE=3 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 1.923e-22
Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 1
Query:   88 SVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            SVQ F +K +A AV + K G+GLIK+NG PI LV P ILRFK +EP+LL+G  +F  +D+++R  GGGH SQ+YAIRQ+I+K L
Sbjct:    6 SVQTFGKKKSATAVAHVKAGKGLIKVNGAPITLVQPEILRFKVYEPLLLVGLDKFTNIDIRVRVTGGGHVSQVYAIRQAIAKGL 89          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_LUPPO (40S ribosomal protein S16 OS=Lupinus polyphyllus GN=RPS16 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.923e-22
Identity = 52/63 (82.54%), Postives = 58/63 (92.06%), Query Frame = 1
Query:  151 GLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            GLIKING PIELV+P ILRFKAFEPILLLG+ RF GVDM+IR +GGGHTSQIYAIRQSI+K+L
Sbjct:   29 GLIKINGSPIELVEPEILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKAL 91          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_CANGA (40S ribosomal protein S16 OS=Candida glabrata GN=RPS16 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.511e-22
Identity = 48/84 (57.14%), Postives = 65/84 (77.38%), Query Frame = 1
Query:   88 SVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            SVQ F +K +A AV + K G+GLIK+NG PI LV+P ILRFK +EP+LL+G  +F  +D+++R  GGGH SQ+YAIRQ+I+K L
Sbjct:    6 SVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFANIDIRVRVTGGGHVSQVYAIRQAIAKGL 89          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_ASHGO (40S ribosomal protein S16 OS=Ashbya gossypii GN=RPS16 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.283e-22
Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 1
Query:   88 SVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            SVQ F +K +A AV + K G+GLIK+NG PI LV P ILRFK +EP+LL+G  +F  +D+++R  GGGH SQ+YAIRQ+I+K L
Sbjct:    6 SVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVQPEILRFKVYEPLLLVGLDKFANIDIRVRVTGGGHVSQVYAIRQAIAKGL 89          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_KLULA (40S ribosomal protein S16 OS=Kluyveromyces lactis GN=RPS16 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.542e-22
Identity = 47/84 (55.95%), Postives = 64/84 (76.19%), Query Frame = 1
Query:   88 SVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            SVQ F +K +A AV + K G+GLIK+NG PI LV P ILRFK +EP+LL+G  +F  +D++++  GGGH SQ+YAIRQ+I+K L
Sbjct:    6 SVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVQPEILRFKVYEPLLLVGLDKFANIDIRVKVTGGGHVSQVYAIRQAIAKGL 89          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_NEUCR (40S ribosomal protein S16 OS=Neurospora crassa GN=rps-16 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.055e-20
Identity = 45/86 (52.33%), Postives = 65/86 (75.58%), Query Frame = 1
Query:   82 TESVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            T++VQ F +K  A AV  C +G+GLIK+NG P++L  P ILR K +EPILLLG  +F  VD++++  GGGH SQ+YA+RQ+I+K++
Sbjct:    3 TQAVQVFGKKKNATAVARCVQGKGLIKVNGVPLKLYAPEILRAKLYEPILLLGTDKFAEVDIRLKVSGGGHVSQVYAVRQAIAKAI 88          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_DICDI (40S ribosomal protein S16 OS=Dictyostelium discoideum GN=rps16 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.800e-20
Identity = 44/93 (47.31%), Postives = 67/93 (72.04%), Query Frame = 1
Query:   61 LATAAPKTESVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            ++  AP+   VQ   +K TAVAV Y   G+GLIK+NG P+E + P  L+ K +EP+L++G+  F+ VD+++R +GGG  +QIYAIRQ+I+KS+
Sbjct:    1 MSAVAPQKNVVQTHGKKRTAVAVAYATNGKGLIKVNGVPLEFIQPKNLKLKVYEPVLIVGKDVFSQVDIRVRVRGGGSVAQIYAIRQAIAKSI 93          
The following BLAST results are available for this feature:
BLAST of CN188703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
RS16_CANAL1.739e-2358.1440S ribosomal protein S16 OS=Candida albicans GN=R... [more]
RS16_YEAST1.127e-2257.1440S ribosomal protein S16 OS=Saccharomyces cerevis... [more]
RS16_DEBHA1.472e-2255.8140S ribosomal protein S16 OS=Debaryomyces hansenii... [more]
RS16_SACEX1.923e-2257.1440S ribosomal protein S16 OS=Saccharomyces exiguus... [more]
RS16_LUPPO1.923e-2282.5440S ribosomal protein S16 OS=Lupinus polyphyllus G... [more]
RS16_CANGA2.511e-2257.1440S ribosomal protein S16 OS=Candida glabrata GN=R... [more]
RS16_ASHGO4.283e-2257.1440S ribosomal protein S16 OS=Ashbya gossypii GN=RP... [more]
RS16_KLULA9.542e-2255.9540S ribosomal protein S16 OS=Kluyveromyces lactis ... [more]
RS16_NEUCR1.055e-2052.3340S ribosomal protein S16 OS=Neurospora crassa GN=... [more]
RS16_DICDI1.800e-2047.3140S ribosomal protein S16 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006J18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188703 ID=CN188703; Name=CN188703; organism=Citrus sinensis; type=EST; length=352bp
ACGTTTTTCAAGCACCCAGGACTCACACAACACAAACACACACTAAGCAC
TGATCCCAACCTGGCTACTGCTGCTCCTAAAACCGAGTCCGTGCAATGCT
TCCGCCGCAAAAATACGGCGGTGGCAGTAACCTACTGCAAGCGCGGCCGC
GGCTTGATCAAGATCAACGGCTGCCCAATCGAGCTTGTGGACCCATAGAT
CCTGCGTTTCAAGGCCTTCGAGCCGATCCTATTGCTCGGACGACACCGTT
TCAACGGAGTAGACATGAAGATCCGCGGCCAGGGCGGAGGCCACACATCT
CAGATCTACGCTATACGCCAGAGCATCTCCAAGAGCCTTGGTCGCGTTTT
AT
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