CN188703

Overview
NameCN188703
Unique NameCN188703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length352
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1351 contig Csv1_Contig1351:1..348. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS9_PYRHO (30S ribosomal protein S9P OS=Pyrococcus horikoshii GN=rps9p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.356e-12
Identity = 32/83 (38.55%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:   91 VQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            +Q   ++ TA+A    + GRG ++ING P+E+++P I RF   EP++L G   +N VD+ ++ QGGG   Q  A R +I+++L
Sbjct:    4 IQTTGKRKTAIARAVIREGRGRVRINGKPVEIIEPEIARFTILEPLILAGEEIWNSVDIDVKVQGGGFMGQAEAARIAIARAL 86
[Close]
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS9_PYRAB (30S ribosomal protein S9P OS=Pyrococcus abyssi GN=rps9p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.356e-12
Identity = 33/83 (39.76%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:   91 VQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            +Q   ++ TA+A    + G+G ++ING P+ELV+P I RF   EP++L G   +N VD+ ++ QGGG   Q  A R +I+++L
Sbjct:    4 IQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDIDVKVQGGGFMGQAEAARIAIARAL 86
[Close]
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS9_PYRFU (30S ribosomal protein S9P OS=Pyrococcus furiosus GN=rps9p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.248e-12
Identity = 30/83 (36.14%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:   91 VQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            +Q   ++ TA+A    + G+G ++ING P+E+++P I RF   EP++L G   +N VD+ ++ +GGG   Q  A R +I+++L
Sbjct:    4 IQTTGKRKTAIARAVIREGKGRVRINGKPVEIIEPEIARFTILEPLILAGEEIWNSVDIDVKVEGGGFMGQAEAARMAIARAL 86
The following BLAST results are available for this feature:
BLAST of CN188703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
RS9_PYRHO2.356e-1238.5530S ribosomal protein S9P OS=Pyrococcus horikoshii... [more]
RS9_PYRAB2.356e-1239.7630S ribosomal protein S9P OS=Pyrococcus abyssi GN=... [more]
RS9_PYRFU5.248e-1236.1430S ribosomal protein S9P OS=Pyrococcus furiosus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006J18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188703 ID=CN188703; Name=CN188703; organism=Citrus sinensis; type=EST; length=352bp
ACGTTTTTCAAGCACCCAGGACTCACACAACACAAACACACACTAAGCAC
TGATCCCAACCTGGCTACTGCTGCTCCTAAAACCGAGTCCGTGCAATGCT
TCCGCCGCAAAAATACGGCGGTGGCAGTAACCTACTGCAAGCGCGGCCGC
GGCTTGATCAAGATCAACGGCTGCCCAATCGAGCTTGTGGACCCATAGAT
CCTGCGTTTCAAGGCCTTCGAGCCGATCCTATTGCTCGGACGACACCGTT
TCAACGGAGTAGACATGAAGATCCGCGGCCAGGGCGGAGGCCACACATCT
CAGATCTACGCTATACGCCAGAGCATCTCCAAGAGCCTTGGTCGCGTTTT
AT
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