CN181596

Overview
NameCN181596
Unique NameCN181596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181596 vs. ExPASy Swiss-Prot
Match: RL35_PIG (60S ribosomal protein L35 OS=Sus scrofa GN=RPL35 PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 4.504e-26
Identity = 55/88 (62.50%), Postives = 76/88 (86.36%), Query Frame = -1
Query:  220 RVTGGAPNKLSKIKVVRLSLAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 483
            +VTGGA +KLSKI+VVR S+A+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E  +P+RK+A+K
Sbjct:   35 KVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKFAVK 122          
BLAST of CN181596 vs. ExPASy Swiss-Prot
Match: RL35_OPHHA (60S ribosomal protein L35 OS=Ophiophagus hannah GN=RPL35 PE=2 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 5.883e-26
Identity = 56/88 (63.64%), Postives = 74/88 (84.09%), Query Frame = -1
Query:  220 RVTGGAPNKLSKIKVVRLSLAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 483
            +VTGGA +KLSKI+VVR S+A+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+  LKT++++++E  +P RKYA+K
Sbjct:   35 KVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEEGLKTKKQQRKERLYPPRKYAVK 122          
BLAST of CN181596 vs. ExPASy Swiss-Prot
Match: RL35_HIPCM (60S ribosomal protein L35 OS=Hippocampus comes GN=rpl35 PE=2 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 3.813e-25
Identity = 53/88 (60.23%), Postives = 76/88 (86.36%), Query Frame = -1
Query:  220 RVTGGAPNKLSKIKVVRLSLAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 483
            +VTGGA +KLSKI+VVR S+A+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ SL+T++++++++ + +RK+A+K
Sbjct:   35 KVTGGAASKLSKIRVVRKSIARVLTVITQTQKENLRKFYKGKKYKPLDLRPKKTRALRRRLNKHEESLRTKKQQRKDLLYSIRKFAVK 122          
BLAST of CN181596 vs. ExPASy Swiss-Prot
Match: RL35_XENTR (60S ribosomal protein L35 OS=Xenopus tropicalis GN=rpl35 PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 1.892e-24
Identity = 53/88 (60.23%), Postives = 73/88 (82.95%), Query Frame = -1
Query:  220 RVTGGAPNKLSKIKVVRLSLAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 483
            +VTGGA +KLSKI+VVR S+A+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+  L+T+++++++  F  RK+A+K
Sbjct:   35 KVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRALRRRLNKHEEGLRTKKQQRKDRLFSARKFAVK 122          
BLAST of CN181596 vs. ExPASy Swiss-Prot
Match: RL35_ICTPU (60S ribosomal protein L35 OS=Ictalurus punctatus GN=rpl35 PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 4.216e-24
Identity = 54/88 (61.36%), Postives = 72/88 (81.82%), Query Frame = -1
Query:  220 RVTGGAPNKLSKIKVVRLSLAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 483
            +VTGGA +KLSKI+VVR S+A+VLTVI+Q QK  LR+ YK KK+ PLDLRP+KTRAIRR+LTKH+  L T++ ++R   + MRK+A+K
Sbjct:   35 KVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPRKTRAIRRQLTKHEQGLMTKKMQRRSRLYSMRKFAVK 122          
BLAST of CN181596 vs. ExPASy Swiss-Prot
Match: RL35_SCHPO (60S ribosomal protein L35 OS=Schizosaccharomyces pombe GN=rpl35 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.191e-24
Identity = 52/93 (55.91%), Postives = 72/93 (77.42%), Query Frame = -1
Query:  220 SFALLRVTGGAPNKLSKIKVVRLSLAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 498
            S  + ++ GG+ +KLSKIK  R  +A++LTVI++  + A REAYKNKK++PLDLR KKTRAIRR LT ++ S KT ++ K+E YFP+RKYA+K
Sbjct:   29 SLRVQKIAGGSGSKLSKIKTTRKDIARILTVINESNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIKKERYFPLRKYALK 121          
BLAST of CN181596 vs. ExPASy Swiss-Prot
Match: RL35_PLAFE (60S ribosomal protein L35 OS=Platichthys flesus GN=rpl35 PE=2 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 7.191e-24
Identity = 51/88 (57.95%), Postives = 75/88 (85.23%), Query Frame = -1
Query:  220 RVTGGAPNKLSKIKVVRLSLAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 483
            +VTGGA +KL+KI VVR S+A+VLTVI+Q QK  LR+ YK KK+ PLDLRP+KTRA+RRRL KH+ SL+T++++++++ + +RK+A+K
Sbjct:   35 KVTGGAASKLTKICVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPRKTRALRRRLNKHEESLRTKKQQRKDLLYSIRKFAVK 122          
BLAST of CN181596 vs. ExPASy Swiss-Prot
Match: RL35_DANRE (60S ribosomal protein L35 OS=Danio rerio GN=rpl35 PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24
Identity = 53/88 (60.23%), Postives = 73/88 (82.95%), Query Frame = -1
Query:  220 RVTGGAPNKLSKIKVVRLSLAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 483
            +VTGGA +KLSKI+VVR S+A+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRAIRR+LTKH+ +L T++ +++   + +RK+A+K
Sbjct:   35 KVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAIRRQLTKHEENLMTKKMQRKSRLYSIRKFAVK 122          
BLAST of CN181596 vs. ExPASy Swiss-Prot
Match: RL35_YEAST (60S ribosomal protein L35 OS=Saccharomyces cerevisiae GN=RPL35A PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.670e-20
Identity = 50/95 (52.63%), Postives = 69/95 (72.63%), Query Frame = -1
Query:  220 RPSFALLRVTGGAPNKLSKIKVVRLSLAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 504
            +   A L+V   +   L KIK VR S+A VLTVI+++Q+ A+R+ YK KK+ P DLR KKTRA+RR LTK +AS  TE+++K+++ FP RKYAIK
Sbjct:   25 KKELAELKVQKLSRPSLPKIKTVRKSIACVLTVINEQQREAVRQLYKGKKYQPKDLRAKKTRALRRALTKFEASQVTEKQRKKQIAFPQRKYAIK 119          

HSP 2 Score: 22.3274 bits (46), Expect = 1.670e-20
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = -2
Query:  501 KSKVDLLNQLKELKAELA 554
            KSK  L +QL +LK ELA
Sbjct:   12 KSKEQLASQLVDLKKELA 29          
BLAST of CN181596 vs. ExPASy Swiss-Prot
Match: RL35_WHEAT (60S ribosomal protein L35 OS=Triticum aestivum GN=RPL35 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.777e-20
Identity = 47/81 (58.02%), Postives = 63/81 (77.78%), Query Frame = -1
Query:  220 NKLSKIKVVRLSLAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 462
            +KL++I  +R S+A+VLTVI+ KQ+A LR  YKNKK+ PLDLR K+TRAIRRRL+  + S   E+ KKR ++FP RK+AIK
Sbjct:   43 SKLNRIHDIRKSIARVLTVINAKQRAQLRLFYKNKKYAPLDLRAKQTRAIRRRLSPDEKSRVLEKTKKRTVHFPQRKFAIK 123          

HSP 2 Score: 24.2534 bits (51), Expect = 4.777e-20
Identity = 12/17 (70.59%), Postives = 12/17 (70.59%), Query Frame = -2
Query:  504 KSKVDLLNQLKELKAEL 554
            KSK DL  QL ELK EL
Sbjct:   14 KSKDDLTKQLAELKTEL 30          
The following BLAST results are available for this feature:
BLAST of CN181596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL35_PIG4.504e-2662.5060S ribosomal protein L35 OS=Sus scrofa GN=RPL35 P... [more]
RL35_OPHHA5.883e-2663.6460S ribosomal protein L35 OS=Ophiophagus hannah GN... [more]
RL35_HIPCM3.813e-2560.2360S ribosomal protein L35 OS=Hippocampus comes GN=... [more]
RL35_XENTR1.892e-2460.2360S ribosomal protein L35 OS=Xenopus tropicalis GN... [more]
RL35_ICTPU4.216e-2461.3660S ribosomal protein L35 OS=Ictalurus punctatus G... [more]
RL35_SCHPO7.191e-2455.9160S ribosomal protein L35 OS=Schizosaccharomyces p... [more]
RL35_PLAFE7.191e-2457.9560S ribosomal protein L35 OS=Platichthys flesus GN... [more]
RL35_DANRE9.392e-2460.2360S ribosomal protein L35 OS=Danio rerio GN=rpl35 ... [more]
RL35_YEAST1.670e-2052.6360S ribosomal protein L35 OS=Saccharomyces cerevis... [more]
RL35_WHEAT4.777e-2058.0260S ribosomal protein L35 OS=Triticum aestivum GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001D02_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181596 ID=CN181596; Name=CN181596; organism=Citrus sinensis; type=EST; length=555bp
CCCCTTTTTTTTTTTTTTTGACAGAAATCCTATCTTGACTGCTATTCCAT
CACAACCTTTCACATCTTGTTTAGGGTGAGATGCACCCTTCAAGTTTTAC
ACACATAAGATTGAACAAAAATGATATTTGAAAAGGTAACAAAGTAAAAA
TTTGTCAACAAAATAGGTTCGTCACTGCAAGATACCAAGATACTCCTAGA
AAAAGATTCTAGCCTACACCTTAATAGCGTACTTCCTCATGGGAAAGTAC
ATCTCCCTCTTCTTCTCCCGCTCGGTCTTCAGTGAAGCCTGGTGCTTGGT
AAGCCTTCTCCTGATAGCCCGGGTCTTCTTGGGACGCAGATCAAGGGGCA
AGAACTTCTTATTCTTGTATGCCTCCCTCAATGCAGCCTTCTGCTTTTGT
GAAATGACAGTCAACACTTGTGCGAGCGACAACCTCACCACCTTGATCTT
GGATAGCTTGTTAGGGGCACCGCCGGTGACCCTTAGCAACGCGAAGGAGG
GGCGAGCTCAGCCTTGAGTTCCTTCAACTGGTTCAAAAGATCCACCTTCG
ATTTC
back to top