CN181596

Overview
NameCN181596
Unique NameCN181596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181596 vs. ExPASy Swiss-Prot
Match: RL35_CAEEL (60S ribosomal protein L35 OS=Caenorhabditis elegans GN=rpl-35 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.403e-19
Identity = 47/88 (53.41%), Postives = 69/88 (78.41%), Query Frame = -1
Query:  220 RVTGGAPNKLSKIKVVRLSLAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 483
            +VTGGA +KLSKI+VVR ++A++LTVI+Q QK  LR+ Y + K+ P+DLR KKTRAIRRRLT H+ SL++ +++ +     +RK+A+K
Sbjct:   35 KVTGGAASKLSKIRVVRKNIARLLTVINQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELSLRSAKQQAKSRNQAVRKFAVK 122          
BLAST of CN181596 vs. ExPASy Swiss-Prot
Match: RL35_THEPA (60S ribosomal protein L35 OS=Theileria parva GN=RPL35 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.606e-15
Identity = 44/94 (46.81%), Postives = 63/94 (67.02%), Query Frame = -1
Query:  217 SFALLRVTGGAPNKLSKIKVVRLSLAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 498
            +F + +VT    +KLSKI +VR ++A+VLTV +Q++K   R+ YK     PL+LRPK TRA R+ LT  Q ++KT +E+KR    P RKYA+ V
Sbjct:   30 TFRVSKVTATGTSKLSKITLVRKAVAKVLTVYNQRKKEEARKKYKKLSKTPLNLRPKLTRAKRKALTTKQLTMKTIKERKRAENLPKRKYALLV 123          
BLAST of CN181596 vs. ExPASy Swiss-Prot
Match: RL36_THELE (60S ribosomal protein L35 OS=Theileria lestoquardi GN=RPL35 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.739e-15
Identity = 43/92 (46.74%), Postives = 62/92 (67.39%), Query Frame = -1
Query:  223 SFALLRVTGGAPNKLSKIKVVRLSLAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAI 498
            +F + +VT    +KLSKI +VR ++A+VLTV +Q++K   R+ YK     PL+LRPK TRA R+ LT  Q ++KT +E+KR    P RKYA+
Sbjct:   30 TFRVSKVTATGTSKLSKITLVRKAVAKVLTVYNQRKKEEARKKYKKLSKTPLNLRPKLTRAKRKALTTKQLTMKTIKERKRAENLPKRKYAL 121          
BLAST of CN181596 vs. ExPASy Swiss-Prot
Match: RL35_THEAN (60S ribosomal protein L35 OS=Theileria annulata GN=RPL35 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.577e-15
Identity = 43/92 (46.74%), Postives = 62/92 (67.39%), Query Frame = -1
Query:  223 SFALLRVTGGAPNKLSKIKVVRLSLAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAI 498
            +F + +VT    +KLSKI +VR ++A+VLTV +Q++K   R+ YK     PL+LRPK TRA R+ LT  Q ++KT +E+KR    P RKYA+
Sbjct:   49 TFRVSKVTATGTSKLSKITLVRKAVAKVLTVYNQRKKEEARKKYKKLSKTPLNLRPKLTRAKRKGLTTKQLTMKTIKERKRAENLPKRKYAL 140          
BLAST of CN181596 vs. ExPASy Swiss-Prot
Match: RL35_DICDI (60S ribosomal protein L35 OS=Dictyostelium discoideum GN=rpl35 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 45/95 (47.37%), Postives = 58/95 (61.05%), Query Frame = -1
Query:  220 SFALLRVTGGAPNKLSKIKVVRLSLAQVLTVISQKQKAALREAYKNKKF--LPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 498
            S  + +V    P+KL+KI  VR ++A+VLTV +Q QK  LR  Y  K    +P DLR KKTRAIRRRLT  Q+ + T R  K    FP R +A+K
Sbjct:   31 SLRVAQVKSPNPSKLAKIGTVRKAIARVLTVFNQTQKNHLRAVYSKKSSSKIPTDLRYKKTRAIRRRLTNKQSKVVTLRVSKTATNFPQRVFAVK 125          
BLAST of CN181596 vs. ExPASy Swiss-Prot
Match: RL35_BABBO (60S ribosomal protein L35 OS=Babesia bovis GN=RPL35 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.151e-13
Identity = 41/94 (43.62%), Postives = 63/94 (67.02%), Query Frame = -1
Query:  217 SFALLRVTGGAPNKLSKIKVVRLSLAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 498
            S  + +VT  + +KLS+I V+R ++A+VLTV +Q+++   R+ Y     +PL++RPK TRA RR LT  Q  LKT +++K+   FP RKYA+ V
Sbjct:   30 SMRVQKVTVTSTSKLSQIGVIRKAIAKVLTVYNQRKREEARKQYTKISEMPLNMRPKLTRAKRRALTPKQLHLKTIKQRKKCENFPKRKYALLV 123          
The following BLAST results are available for this feature:
BLAST of CN181596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL35_CAEEL1.403e-1953.4160S ribosomal protein L35 OS=Caenorhabditis elegan... [more]
RL35_THEPA1.606e-1546.8160S ribosomal protein L35 OS=Theileria parva GN=RP... [more]
RL36_THELE2.739e-1546.7460S ribosomal protein L35 OS=Theileria lestoquardi... [more]
RL35_THEAN3.577e-1546.7460S ribosomal protein L35 OS=Theileria annulata GN... [more]
RL35_DICDI6.746e-1447.3760S ribosomal protein L35 OS=Dictyostelium discoid... [more]
RL35_BABBO1.151e-1343.6260S ribosomal protein L35 OS=Babesia bovis GN=RPL3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D02_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181596 ID=CN181596; Name=CN181596; organism=Citrus sinensis; type=EST; length=555bp
CCCCTTTTTTTTTTTTTTTGACAGAAATCCTATCTTGACTGCTATTCCAT
CACAACCTTTCACATCTTGTTTAGGGTGAGATGCACCCTTCAAGTTTTAC
ACACATAAGATTGAACAAAAATGATATTTGAAAAGGTAACAAAGTAAAAA
TTTGTCAACAAAATAGGTTCGTCACTGCAAGATACCAAGATACTCCTAGA
AAAAGATTCTAGCCTACACCTTAATAGCGTACTTCCTCATGGGAAAGTAC
ATCTCCCTCTTCTTCTCCCGCTCGGTCTTCAGTGAAGCCTGGTGCTTGGT
AAGCCTTCTCCTGATAGCCCGGGTCTTCTTGGGACGCAGATCAAGGGGCA
AGAACTTCTTATTCTTGTATGCCTCCCTCAATGCAGCCTTCTGCTTTTGT
GAAATGACAGTCAACACTTGTGCGAGCGACAACCTCACCACCTTGATCTT
GGATAGCTTGTTAGGGGCACCGCCGGTGACCCTTAGCAACGCGAAGGAGG
GGCGAGCTCAGCCTTGAGTTCCTTCAACTGGTTCAAAAGATCCACCTTCG
ATTTC
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