CN188554
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_PONAB (Proteasome subunit alpha type-1 OS=Pongo abelii GN=PSMA1 PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 9.123e-22 Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = -3 Query: 412 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 747 +RPYGVGLL+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER F E +L+K L A+RETL E L + ++ +VG F I D + V ++ E Sbjct: 125 RRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIHDDDDVSPFLEGLE 237
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBR (Proteasome subunit alpha type-1 OS=Trypanosoma brucei rhodesiense PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.556e-21 Identity = 53/113 (46.90%), Postives = 72/113 (63.72%), Query Frame = -3 Query: 412 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAI-RETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 747 KRP+GVGLL+AG D +G LY PSG+ F+++A A+G RSQAA+TYLER F F ++L+ AL A+ T G L T+A+VG G PF IL +E +K +D F+ Sbjct: 126 KRPFGVGLLIAGYDRQGPRLYQTVPSGDVFDFKATAMGLRSQAARTYLERHFRGFPACDLDELVMHALRALGAATSGGVELNIKNTTIAIVGKGTPFTILTEEEARKYLDGFK 238
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_CHICK (Proteasome subunit alpha type-1 OS=Gallus gallus GN=PSMA1 PE=2 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 3.467e-21 Identity = 48/113 (42.48%), Postives = 71/113 (62.83%), Query Frame = -3 Query: 412 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 747 +RPYGVGLL+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+ YLER F++ +L+K L A+RETL E L + ++ +VG F I D + V ++ E Sbjct: 124 RRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCKAMSIGARSQSARNYLERHMTEFTDCNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDMEFTIYDDDDVAPFLEGLE 236
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_DROME (Proteasome subunit alpha type-1 OS=Drosophila melanogaster GN=Pros35 PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.456e-19 Identity = 50/110 (45.45%), Postives = 71/110 (64.55%), Query Frame = -3 Query: 430 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETL----QGETLKSSICTVAVVGAGEPFHILDQETVQK 747 +RPYGVGLLVAG DE+G H+Y PS +F +A +IGSRSQ+A+TYLE+ F +S+++++I+ + AI TL QG+ TVA+VG +PF IL + K Sbjct: 125 RRPYGVGLLVAGYDERGPHIYQVTPSATFFNCKANSIGSRSQSARTYLEKNLNKFLDSSKDEIIRHGIRAILGTLPTDEQGKDAGQYDITVAIVGKDQPFTILSNKDSAK 234
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_SCHPO (Probable proteasome subunit alpha type-1 OS=Schizosaccharomyces pombe GN=SPAC6G10.04c PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.238e-19 Identity = 48/110 (43.64%), Postives = 71/110 (64.55%), Query Frame = -3 Query: 421 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETL-QGETLKSSICTVAVVGAGEPFHILDQETVQKLID 747 +RPYGVG LV G DE G HL PSG EY ++GSRSQ+A+TY+ER + F +S+RE+LI AL A+R+TL + + L +++V+G E + + DQ ++ +D Sbjct: 125 RRPYGVGFLVIGYDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPDSSREELILSALRALRDTLSKDQELTEENVSISVIGKDEKYTLYDQNDTKEWLD 234
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_YEAST (Proteasome component PRE5 OS=Saccharomyces cerevisiae GN=PRE5 PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.610e-18 Identity = 52/109 (47.71%), Postives = 67/109 (61.47%), Query Frame = -3 Query: 424 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENF--SESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 744 RPYGVGLL+ G D+ GAHL PSGN E AIG+RSQ AKTYLER + F + ++LIK + AI ++L+ E+L ++A+VG PF I D E V K I Sbjct: 126 RPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 234
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_CAEEL (Proteasome subunit alpha type-1 OS=Caenorhabditis elegans GN=pas-6 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.610e-18 Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = -3 Query: 436 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQG-ETLKSSICTVAVVGAGEPFHILDQETV 747 +RP+GVG+L+AG D+ GAH+ PS +IG+RSQ+A+TYLER +NF +ST E LI AL+A+R+TL E L + ++ +VG PF +L+ V Sbjct: 125 RRPFGVGILIAGYDKDGAHIIQTDPSAEVVSMHGTSIGARSQSARTYLERNVDNFEKSTPEQLIVHALLALRDTLPAEENLNAQNTSIGIVGKDSPFSLLEDAQV 229
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA2_SCHPO (Probable proteasome subunit alpha type-2 OS=Schizosaccharomyces pombe GN=SPCC1442.06 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.666e-15 Identity = 44/89 (49.44%), Postives = 62/89 (69.66%), Query Frame = -3 Query: 478 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 744 RP+GV LLVAG+DEKG LY PSG YF ++A AIG S AAKT+LE+R+ + E +D + A++A++ET +GE + +I +AVV Sbjct: 128 RPFGVSLLVAGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYND--ELELDDAVHTAILALKETFEGELTEDNI-EIAVV 213
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA2_DICDI (Proteasome subunit alpha type-2 OS=Dictyostelium discoideum GN=psmA2 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.411e-14 Identity = 43/98 (43.88%), Postives = 65/98 (66.33%), Query Frame = -3 Query: 451 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHIL 744 RP+GV LLVAG DEKG HLY PSG+YF ++A AIG ++KT+LE+R+ + E ED I+ AL+ I+E + + + ++ +A++G + F IL Sbjct: 126 RPFGVSLLVAGFDEKGPHLYQVDPSGSYFAWKATAIGKNMVSSKTFLEKRYSDDLEI--EDAIQTALITIKEGFETQLTEFNM-ELAIIGKNQEFKIL 220
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA2_NEUCR (Probable proteasome subunit alpha type-2 OS=Neurospora crassa GN=B14D6.510 PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.560e-13 Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = -3 Query: 433 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQ 744 RPYGV LL+AG DE G LY PSG+YF ++A AIG + AKT+LE+R+ E ED + AL+ ++ET++GE + + +VG H+L E V+ Sbjct: 128 RPYGVSLLIAGWDEGGPMLYQVDPSGSYFPWKATAIGKNATTAKTFLEKRYTEGLE--LEDAVHIALLTLKETIEGE-MNGDTIEIGIVGPPAD-HLLGVEGVE 227 The following BLAST results are available for this feature:
BLAST of CN188554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188554 ID=CN188554; Name=CN188554; organism=Citrus sinensis; type=EST; length=749bpback to top |