CN188554

Overview
NameCN188554
Unique NameCN188554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9880 contig Csv1_Contig9880:590..1338. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_PONAB (Proteasome subunit alpha type-1 OS=Pongo abelii GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.123e-22
Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = -3
Query:  412 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 747
            +RPYGVGLL+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    F E    +L+K  L A+RETL  E  L +   ++ +VG    F I D + V   ++  E
Sbjct:  125 RRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIHDDDDVSPFLEGLE 237          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBR (Proteasome subunit alpha type-1 OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.556e-21
Identity = 53/113 (46.90%), Postives = 72/113 (63.72%), Query Frame = -3
Query:  412 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAI-RETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 747
            KRP+GVGLL+AG D +G  LY   PSG+ F+++A A+G RSQAA+TYLER F  F     ++L+  AL A+   T  G  L     T+A+VG G PF IL +E  +K +D F+
Sbjct:  126 KRPFGVGLLIAGYDRQGPRLYQTVPSGDVFDFKATAMGLRSQAARTYLERHFRGFPACDLDELVMHALRALGAATSGGVELNIKNTTIAIVGKGTPFTILTEEEARKYLDGFK 238          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_CHICK (Proteasome subunit alpha type-1 OS=Gallus gallus GN=PSMA1 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.467e-21
Identity = 48/113 (42.48%), Postives = 71/113 (62.83%), Query Frame = -3
Query:  412 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 747
            +RPYGVGLL+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+ YLER    F++    +L+K  L A+RETL  E  L +   ++ +VG    F I D + V   ++  E
Sbjct:  124 RRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCKAMSIGARSQSARNYLERHMTEFTDCNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDMEFTIYDDDDVAPFLEGLE 236          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_DROME (Proteasome subunit alpha type-1 OS=Drosophila melanogaster GN=Pros35 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.456e-19
Identity = 50/110 (45.45%), Postives = 71/110 (64.55%), Query Frame = -3
Query:  430 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETL----QGETLKSSICTVAVVGAGEPFHILDQETVQK 747
            +RPYGVGLLVAG DE+G H+Y   PS  +F  +A +IGSRSQ+A+TYLE+    F +S+++++I+  + AI  TL    QG+       TVA+VG  +PF IL  +   K
Sbjct:  125 RRPYGVGLLVAGYDERGPHIYQVTPSATFFNCKANSIGSRSQSARTYLEKNLNKFLDSSKDEIIRHGIRAILGTLPTDEQGKDAGQYDITVAIVGKDQPFTILSNKDSAK 234          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_SCHPO (Probable proteasome subunit alpha type-1 OS=Schizosaccharomyces pombe GN=SPAC6G10.04c PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.238e-19
Identity = 48/110 (43.64%), Postives = 71/110 (64.55%), Query Frame = -3
Query:  421 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETL-QGETLKSSICTVAVVGAGEPFHILDQETVQKLID 747
            +RPYGVG LV G DE G HL    PSG   EY   ++GSRSQ+A+TY+ER  + F +S+RE+LI  AL A+R+TL + + L     +++V+G  E + + DQ   ++ +D
Sbjct:  125 RRPYGVGFLVIGYDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPDSSREELILSALRALRDTLSKDQELTEENVSISVIGKDEKYTLYDQNDTKEWLD 234          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_YEAST (Proteasome component PRE5 OS=Saccharomyces cerevisiae GN=PRE5 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.610e-18
Identity = 52/109 (47.71%), Postives = 67/109 (61.47%), Query Frame = -3
Query:  424 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENF--SESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 744
            RPYGVGLL+ G D+ GAHL    PSGN  E    AIG+RSQ AKTYLER  + F   +   ++LIK  + AI ++L+ E+L     ++A+VG   PF I D E V K I
Sbjct:  126 RPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 234          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_CAEEL (Proteasome subunit alpha type-1 OS=Caenorhabditis elegans GN=pas-6 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.610e-18
Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = -3
Query:  436 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQG-ETLKSSICTVAVVGAGEPFHILDQETV 747
            +RP+GVG+L+AG D+ GAH+    PS         +IG+RSQ+A+TYLER  +NF +ST E LI  AL+A+R+TL   E L +   ++ +VG   PF +L+   V
Sbjct:  125 RRPFGVGILIAGYDKDGAHIIQTDPSAEVVSMHGTSIGARSQSARTYLERNVDNFEKSTPEQLIVHALLALRDTLPAEENLNAQNTSIGIVGKDSPFSLLEDAQV 229          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA2_SCHPO (Probable proteasome subunit alpha type-2 OS=Schizosaccharomyces pombe GN=SPCC1442.06 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.666e-15
Identity = 44/89 (49.44%), Postives = 62/89 (69.66%), Query Frame = -3
Query:  478 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 744
            RP+GV LLVAG+DEKG  LY   PSG YF ++A AIG  S AAKT+LE+R+ +  E   +D +  A++A++ET +GE  + +I  +AVV
Sbjct:  128 RPFGVSLLVAGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYND--ELELDDAVHTAILALKETFEGELTEDNI-EIAVV 213          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA2_DICDI (Proteasome subunit alpha type-2 OS=Dictyostelium discoideum GN=psmA2 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.411e-14
Identity = 43/98 (43.88%), Postives = 65/98 (66.33%), Query Frame = -3
Query:  451 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHIL 744
            RP+GV LLVAG DEKG HLY   PSG+YF ++A AIG    ++KT+LE+R+ +  E   ED I+ AL+ I+E  + +  + ++  +A++G  + F IL
Sbjct:  126 RPFGVSLLVAGFDEKGPHLYQVDPSGSYFAWKATAIGKNMVSSKTFLEKRYSDDLEI--EDAIQTALITIKEGFETQLTEFNM-ELAIIGKNQEFKIL 220          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA2_NEUCR (Probable proteasome subunit alpha type-2 OS=Neurospora crassa GN=B14D6.510 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.560e-13
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = -3
Query:  433 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQ 744
            RPYGV LL+AG DE G  LY   PSG+YF ++A AIG  +  AKT+LE+R+    E   ED +  AL+ ++ET++GE +      + +VG     H+L  E V+
Sbjct:  128 RPYGVSLLIAGWDEGGPMLYQVDPSGSYFPWKATAIGKNATTAKTFLEKRYTEGLE--LEDAVHIALLTLKETIEGE-MNGDTIEIGIVGPPAD-HLLGVEGVE 227          
The following BLAST results are available for this feature:
BLAST of CN188554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
PSA1_PONAB9.123e-2244.25Proteasome subunit alpha type-1 OS=Pongo abelii GN... [more]
PSA1_TRYBR1.556e-2146.90Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSA1_CHICK3.467e-2142.48Proteasome subunit alpha type-1 OS=Gallus gallus G... [more]
PSA1_DROME1.456e-1945.45Proteasome subunit alpha type-1 OS=Drosophila mela... [more]
PSA1_SCHPO4.238e-1943.64Probable proteasome subunit alpha type-1 OS=Schizo... [more]
PSA1_YEAST1.610e-1847.71Proteasome component PRE5 OS=Saccharomyces cerevis... [more]
PSA1_CAEEL1.610e-1843.81Proteasome subunit alpha type-1 OS=Caenorhabditis ... [more]
PSA2_SCHPO1.666e-1549.44Probable proteasome subunit alpha type-2 OS=Schizo... [more]
PSA2_DICDI1.411e-1443.88Proteasome subunit alpha type-2 OS=Dictyostelium d... [more]
PSA2_NEUCR1.560e-1342.31Probable proteasome subunit alpha type-2 OS=Neuros... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188554 ID=CN188554; Name=CN188554; organism=Citrus sinensis; type=EST; length=749bp
CTTTTACGAATNAACTAATACACAAGACAAAATGTCATTTTCGGGTTCCC
CTTTTGTATCTAAAGTGTTAAAGCAAGATGTTTGGAGTTCCCTAAAGGAT
ACTATTAAAATGTTTGTACTGATAAGGCAAGATAATTTGCACCATAAGCG
GAAAAATAAATTGTCCAACAGAATGATTTCCCGAAGTGCAACCCATATTC
CGTGGAACCCATCAAACACATGCTTAAACTCCTCATCTAAAGACGAAGAC
GAAGAAGCTGACTTCTGGTCCTTGCATCCTCAAATGTCCATTGGAGCTAC
ACCCTCGCCTGCTGGAGCACCTTGTTCTGAAGCTGCGCCTCCTTCTGCAG
CACTGCCTCCTTCTGCAGCACTATCTGGTGCAGCAGCAGGACCCTCTTCA
GTGCCAGCAATCTCAAATGAATCAATTAACTTTTGTACGGTTTCTTGATC
TAAAATATGAAATGGCTCCCCAGCTCCTACCACAGCAACTGTGCAAATAG
AACTCTTTAGTGTTTCTCCTTGTAAGGTTTCCCTTATTGCCATGAGAGCG
TCCTTGATCAGATCTTCTCTTGTAGATTCTGAAAAGTTCTCAAACCTGCG
TTCCAAGTATGTCTTTGCAGCTTGAGATCGGGACCCAATGGCAAATGCTT
GATACTCAAAATAGTTCCCACTTGGGCAGTTATAATAAAGGTGGGCTCCT
TTTTCATCCAAGCCAGCAACCAGCAGGCCAACACCATATGGCCGTTTCC
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