CN188554
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1B_ARATH (Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana GN=PAF2 PE=1 SV=2) HSP 1 Score: 201.06 bits (510), Expect = 5.483e-51 Identity = 94/112 (83.93%), Postives = 106/112 (94.64%), Query Frame = -3 Query: 412 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 747 KRPYGVGLLV GLDE GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLER+FE+F ES++EDLIKDA+MAIRETLQGETLKSS+CTV+V+G EPFH LDQE++QK+ID+FE Sbjct: 125 KRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFESFQESSKEDLIKDAIMAIRETLQGETLKSSLCTVSVLGVDEPFHFLDQESIQKVIDTFE 236
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1A_ARATH (Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana GN=PAF1 PE=1 SV=3) HSP 1 Score: 201.06 bits (510), Expect = 5.483e-51 Identity = 93/112 (83.04%), Postives = 105/112 (93.75%), Query Frame = -3 Query: 412 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 747 KRPYGVGLLV GLDE GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFE+F +S+REDLIKDA++A+RETLQGETLKSS+CTVA++G EPFH LDQE +QK+ID+FE Sbjct: 125 KRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFESFGDSSREDLIKDAILAVRETLQGETLKSSLCTVAILGVDEPFHFLDQEAIQKVIDTFE 236
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica GN=PAF1 PE=2 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 4.653e-42 Identity = 86/119 (72.27%), Postives = 98/119 (82.35%), Query Frame = -3 Query: 406 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV-----GAGEPFHILDQETVQKLIDSFEIA 747 KRPYGVGLLVAGLDE GAHLYYNCPSGNYFEYQAFAIGSRSQAAKT+LERRFE +++ T E LIKDAL AI+ETLQGE L SS CTVA+V G EPF ++D + +Q++IDS E A Sbjct: 125 KRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYNDYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIVGRKDDGTVEPFEMIDVKRIQEIIDSMEAA 243
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_DICDI (Proteasome subunit alpha type-1 OS=Dictyostelium discoideum GN=psmA1 PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.824e-28 Identity = 58/114 (50.88%), Postives = 82/114 (71.93%), Query Frame = -3 Query: 412 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQG--ETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 747 +RPYGVGLLVAG D+ GAH+Y CPSGN+++Y++ +IGSRSQ+AKTYLE+ FE+F E T E LI L A+RET+ +TL S ++ +VG G+PF I+++ Q ++ E Sbjct: 125 RRPYGVGLLVAGYDQLGAHIYQTCPSGNFYDYKSISIGSRSQSAKTYLEKHFESFEECTLEQLITHGLRALRETIPNTDDTLNSKNVSIGIVGEGQPFKIIEEADAQPYLNLLE 238
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_TRYCR (Proteasome subunit alpha type-1 OS=Trypanosoma cruzi PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.663e-23 Identity = 54/114 (47.37%), Postives = 77/114 (67.54%), Query Frame = -3 Query: 409 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAI-RETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFEI 747 KRP+GVGLL+AG D G HLY+ PSG+ F+++A A+G RSQAA+TYLE+ FE+F + ++LI AL A+ T G L T+A+VG G PF +L +E +K +D F++ Sbjct: 126 KRPFGVGLLIAGYDSTGPHLYHTVPSGDVFDFKATAMGLRSQAARTYLEKHFESFPDCGLDELIMHALKALAAATSGGAELNIKNTTIAIVGKGTPFMVLTEEAARKYLDGFKM 239
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_MOUSE (Proteasome subunit alpha type-1 OS=Mus musculus GN=Psma1 PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.078e-22 Identity = 51/113 (45.13%), Postives = 72/113 (63.72%), Query Frame = -3 Query: 412 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 747 +RPYGVGLL+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER F E ++L+K L A+RETL E L + ++ +VG F I D + V +D E Sbjct: 125 RRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLDGLE 237
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_RAT (Proteasome subunit alpha type-1 OS=Rattus norvegicus GN=Psma1 PE=1 SV=2) HSP 1 Score: 105.531 bits (262), Expect = 3.135e-22 Identity = 50/113 (44.25%), Postives = 72/113 (63.72%), Query Frame = -3 Query: 412 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 747 +RPYGVGLL+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER F + ++L+K L A+RETL E L + ++ +VG F I D + V +D E Sbjct: 125 RRPYGVGLLIAGYDDMGPHVFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMQCNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLDGLE 237
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_MACFA (Proteasome subunit alpha type-1 OS=Macaca fascicularis GN=PSMA1 PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.348e-22 Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = -3 Query: 412 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 747 +RPYGVGLL+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER F E +L+K L A+RETL E L + ++ +VG F I D + V ++ E Sbjct: 125 RRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLE 237
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_HUMAN (Proteasome subunit alpha type-1 OS=Homo sapiens GN=PSMA1 PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.348e-22 Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = -3 Query: 412 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 747 +RPYGVGLL+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER F E +L+K L A+RETL E L + ++ +VG F I D + V ++ E Sbjct: 125 RRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLE 237
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_BOVIN (Proteasome subunit alpha type-1 OS=Bos taurus GN=PSMA1 PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.348e-22 Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = -3 Query: 412 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 747 +RPYGVGLL+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER F E +L+K L A+RETL E L + ++ +VG F I D + V ++ E Sbjct: 125 RRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLE 237 The following BLAST results are available for this feature:
BLAST of CN188554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188554 ID=CN188554; Name=CN188554; organism=Citrus sinensis; type=EST; length=749bpback to top |