CN188554
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA2A_ARATH (Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.475e-13 Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = -3 Query: 412 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 744 RP+GV LLVAG D+KG LY PSG+YF ++A A+G AKT+LE+R+ E +D I A++ ++E +GE + S + +GA + F +L + + E Sbjct: 128 RPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDME--LDDAIHTAILTLKEGFEGE-ISSKNIEIGKIGADKVFRVLTPAEIDDYLAEVE 235
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA2B_ARATH (Proteasome subunit alpha type-2-B OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.011e-12 Identity = 40/111 (36.04%), Postives = 62/111 (55.86%), Query Frame = -3 Query: 412 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 744 RP+GV LLVAG D+KG LY PSG+YF ++A A+G AKT+LE+R+ E +D I A++ ++E +GE + S + +G + F +L + + E Sbjct: 128 RPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDME--LDDAIHTAILTLKEGFEGE-ISSKNIEIGKIGTDKVFRVLTPAEIDDYLAEVE 235
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.842e-12 Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = -3 Query: 442 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQE 744 RP+GV LL+AG+DE G LY++ PSG YF Y+A AIGS S+ AK+ L + F + T E+ L +R+ ++ E L S +A V A FHI + E Sbjct: 136 RPFGVALLIAGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFH--KDMTLEEAEVLILKVLRQVME-EKLDSKNVQLAKVTAEGGFHIYNDE 233
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSJ (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. japonica GN=PAB1 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.017e-12 Identity = 36/111 (32.43%), Postives = 64/111 (57.66%), Query Frame = -3 Query: 412 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 744 RP+GV LL+AG D+ G LY PSG+YF ++A A+G AKT+LE+R+ E +D I A++ ++E +G+ ++I + ++ + F +L ++ ++ E Sbjct: 128 RPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDME--LDDAIHTAILTLKEGYEGQISANNI-EIGIIRSDREFKVLSPAEIKDFLEEVE 235
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSI (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. indica GN=PAB1 PE=2 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 5.017e-12 Identity = 36/111 (32.43%), Postives = 64/111 (57.66%), Query Frame = -3 Query: 412 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 744 RP+GV LL+AG D+ G LY PSG+YF ++A A+G AKT+LE+R+ E +D I A++ ++E +G+ ++I + ++ + F +L ++ ++ E Sbjct: 128 RPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDME--LDDAIHTAILTLKEGYEGQISANNI-EIGIIRSDREFKVLSPAEIKDFLEEVE 235
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA2_YEAST (Proteasome component Y7 OS=Saccharomyces cerevisiae GN=PRE8 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.553e-12 Identity = 42/95 (44.21%), Postives = 60/95 (63.16%), Query Frame = -3 Query: 463 RPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEP 744 RP+GV LL+AG DE G LY PSG+YF ++A AIG S AAKT+LE+R+ + E ED I AL+ ++E+++GE +A++G P Sbjct: 128 RPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWND--ELELEDAIHIALLTLKESVEGE-FNGDTIELAIIGDENP 219
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA5_TRYBB (Proteasome subunit alpha type-5 OS=Trypanosoma brucei brucei PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.460e-11 Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = -3 Query: 421 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKT-YLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLID 744 RP+GV LL+AG+DE G L+ PSG Y Y A AIG ++AA+T + ER N + E+L + +R+ ++ + K+S+ V + I DQE +Q++ID Sbjct: 135 RPFGVSLLIAGVDENGPQLWQTDPSGTYTRYDAQAIGGGAEAAQTVFSERYHRNMTVEEAENL---TVQILRQVMEEKLTKTSVEIAIVPVSTGRLQIYDQEQIQRIID 240
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA5_DICDI (Proteasome subunit alpha type-5 OS=Dictyostelium discoideum GN=psmA5 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.460e-11 Identity = 36/111 (32.43%), Postives = 65/111 (58.56%), Query Frame = -3 Query: 412 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 744 RP+GV LL+AG+DEKG LYY+ PSG + ++ A AIG+ S+ A+T L+ ++ T + K AL +++ ++ +++ + A + F I ++E + +I + E Sbjct: 133 RPFGVALLIAGIDEKGPSLYYSDPSGTFTQFHAKAIGAGSEGAQTTLQEKYS--KTLTIAECQKLALTTLKQVMEEAITTTNVELAVITKADQKFKIYNKEELATVIQTLE 241
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA5_RAT (Proteasome subunit alpha type-5 OS=Rattus norvegicus GN=Psma5 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.252e-11 Identity = 36/107 (33.64%), Postives = 67/107 (62.62%), Query Frame = -3 Query: 424 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 744 RP+GV LL G+DEKG L++ PSG + + A AIGS S+ A++ L+ + +T ++ IK +L+ +++ ++ E L ++ +A V G+ FH+ +E ++++I Sbjct: 135 RPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYH--KSTTLKEAIKSSLIILKQVME-EKLNATNIELATVQPGQNFHMFTKEELEEVI 238
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA5_MOUSE (Proteasome subunit alpha type-5 OS=Mus musculus GN=Psma5 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.547e-11 Identity = 36/107 (33.64%), Postives = 66/107 (61.68%), Query Frame = -3 Query: 424 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 744 RP+GV LL G+DEKG L++ PSG + + A AIGS S+ A++ L+ + T ++ IK +L+ +++ ++ E L ++ +A V G+ FH+ +E ++++I Sbjct: 135 RPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYH--KSMTLKEAIKSSLIILKQVME-EKLNATNIELATVQPGQNFHMFTKEELEEVI 238 The following BLAST results are available for this feature:
BLAST of CN188554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188554 ID=CN188554; Name=CN188554; organism=Citrus sinensis; type=EST; length=749bpback to top |