CN188554

Overview
NameCN188554
Unique NameCN188554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA2A_ARATH (Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.475e-13
Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = -3
Query:  412 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 744
            RP+GV LLVAG D+KG  LY   PSG+YF ++A A+G     AKT+LE+R+    E   +D I  A++ ++E  +GE + S    +  +GA + F +L    +   +   E
Sbjct:  128 RPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDME--LDDAIHTAILTLKEGFEGE-ISSKNIEIGKIGADKVFRVLTPAEIDDYLAEVE 235          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA2B_ARATH (Proteasome subunit alpha type-2-B OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.011e-12
Identity = 40/111 (36.04%), Postives = 62/111 (55.86%), Query Frame = -3
Query:  412 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 744
            RP+GV LLVAG D+KG  LY   PSG+YF ++A A+G     AKT+LE+R+    E   +D I  A++ ++E  +GE + S    +  +G  + F +L    +   +   E
Sbjct:  128 RPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDME--LDDAIHTAILTLKEGFEGE-ISSKNIEIGKIGTDKVFRVLTPAEIDDYLAEVE 235          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.842e-12
Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = -3
Query:  442 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQE 744
            RP+GV LL+AG+DE G  LY++ PSG YF Y+A AIGS S+ AK+ L + F    + T E+     L  +R+ ++ E L S    +A V A   FHI + E
Sbjct:  136 RPFGVALLIAGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFH--KDMTLEEAEVLILKVLRQVME-EKLDSKNVQLAKVTAEGGFHIYNDE 233          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSJ (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. japonica GN=PAB1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.017e-12
Identity = 36/111 (32.43%), Postives = 64/111 (57.66%), Query Frame = -3
Query:  412 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 744
            RP+GV LL+AG D+ G  LY   PSG+YF ++A A+G     AKT+LE+R+    E   +D I  A++ ++E  +G+   ++I  + ++ +   F +L    ++  ++  E
Sbjct:  128 RPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDME--LDDAIHTAILTLKEGYEGQISANNI-EIGIIRSDREFKVLSPAEIKDFLEEVE 235          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSI (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. indica GN=PAB1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.017e-12
Identity = 36/111 (32.43%), Postives = 64/111 (57.66%), Query Frame = -3
Query:  412 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 744
            RP+GV LL+AG D+ G  LY   PSG+YF ++A A+G     AKT+LE+R+    E   +D I  A++ ++E  +G+   ++I  + ++ +   F +L    ++  ++  E
Sbjct:  128 RPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDME--LDDAIHTAILTLKEGYEGQISANNI-EIGIIRSDREFKVLSPAEIKDFLEEVE 235          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA2_YEAST (Proteasome component Y7 OS=Saccharomyces cerevisiae GN=PRE8 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.553e-12
Identity = 42/95 (44.21%), Postives = 60/95 (63.16%), Query Frame = -3
Query:  463 RPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEP 744
            RP+GV LL+AG DE  G  LY   PSG+YF ++A AIG  S AAKT+LE+R+ +  E   ED I  AL+ ++E+++GE        +A++G   P
Sbjct:  128 RPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWND--ELELEDAIHIALLTLKESVEGE-FNGDTIELAIIGDENP 219          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA5_TRYBB (Proteasome subunit alpha type-5 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.460e-11
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = -3
Query:  421 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKT-YLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLID 744
            RP+GV LL+AG+DE G  L+   PSG Y  Y A AIG  ++AA+T + ER   N +    E+L    +  +R+ ++ +  K+S+    V  +     I DQE +Q++ID
Sbjct:  135 RPFGVSLLIAGVDENGPQLWQTDPSGTYTRYDAQAIGGGAEAAQTVFSERYHRNMTVEEAENL---TVQILRQVMEEKLTKTSVEIAIVPVSTGRLQIYDQEQIQRIID 240          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA5_DICDI (Proteasome subunit alpha type-5 OS=Dictyostelium discoideum GN=psmA5 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.460e-11
Identity = 36/111 (32.43%), Postives = 65/111 (58.56%), Query Frame = -3
Query:  412 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 744
            RP+GV LL+AG+DEKG  LYY+ PSG + ++ A AIG+ S+ A+T L+ ++      T  +  K AL  +++ ++     +++    +  A + F I ++E +  +I + E
Sbjct:  133 RPFGVALLIAGIDEKGPSLYYSDPSGTFTQFHAKAIGAGSEGAQTTLQEKYS--KTLTIAECQKLALTTLKQVMEEAITTTNVELAVITKADQKFKIYNKEELATVIQTLE 241          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA5_RAT (Proteasome subunit alpha type-5 OS=Rattus norvegicus GN=Psma5 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.252e-11
Identity = 36/107 (33.64%), Postives = 67/107 (62.62%), Query Frame = -3
Query:  424 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 744
            RP+GV LL  G+DEKG  L++  PSG + +  A AIGS S+ A++ L+  +     +T ++ IK +L+ +++ ++ E L ++   +A V  G+ FH+  +E ++++I
Sbjct:  135 RPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYH--KSTTLKEAIKSSLIILKQVME-EKLNATNIELATVQPGQNFHMFTKEELEEVI 238          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA5_MOUSE (Proteasome subunit alpha type-5 OS=Mus musculus GN=Psma5 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.547e-11
Identity = 36/107 (33.64%), Postives = 66/107 (61.68%), Query Frame = -3
Query:  424 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 744
            RP+GV LL  G+DEKG  L++  PSG + +  A AIGS S+ A++ L+  +      T ++ IK +L+ +++ ++ E L ++   +A V  G+ FH+  +E ++++I
Sbjct:  135 RPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYH--KSMTLKEAIKSSLIILKQVME-EKLNATNIELATVQPGQNFHMFTKEELEEVI 238          
The following BLAST results are available for this feature:
BLAST of CN188554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
PSA2A_ARATH3.475e-1336.94Proteasome subunit alpha type-2-A OS=Arabidopsis t... [more]
PSA2B_ARATH1.011e-1236.04Proteasome subunit alpha type-2-B OS=Arabidopsis t... [more]
PSA5_SCHPO3.842e-1242.57Probable proteasome subunit alpha type-5 OS=Schizo... [more]
PSA2_ORYSJ5.017e-1232.43Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA2_ORYSI5.017e-1232.43Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA2_YEAST6.553e-1244.21Proteasome component Y7 OS=Saccharomyces cerevisia... [more]
PSA5_TRYBB1.460e-1136.70Proteasome subunit alpha type-5 OS=Trypanosoma bru... [more]
PSA5_DICDI1.460e-1132.43Proteasome subunit alpha type-5 OS=Dictyostelium d... [more]
PSA5_RAT3.252e-1133.64Proteasome subunit alpha type-5 OS=Rattus norvegic... [more]
PSA5_MOUSE5.547e-1133.64Proteasome subunit alpha type-5 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188554 ID=CN188554; Name=CN188554; organism=Citrus sinensis; type=EST; length=749bp
CTTTTACGAATNAACTAATACACAAGACAAAATGTCATTTTCGGGTTCCC
CTTTTGTATCTAAAGTGTTAAAGCAAGATGTTTGGAGTTCCCTAAAGGAT
ACTATTAAAATGTTTGTACTGATAAGGCAAGATAATTTGCACCATAAGCG
GAAAAATAAATTGTCCAACAGAATGATTTCCCGAAGTGCAACCCATATTC
CGTGGAACCCATCAAACACATGCTTAAACTCCTCATCTAAAGACGAAGAC
GAAGAAGCTGACTTCTGGTCCTTGCATCCTCAAATGTCCATTGGAGCTAC
ACCCTCGCCTGCTGGAGCACCTTGTTCTGAAGCTGCGCCTCCTTCTGCAG
CACTGCCTCCTTCTGCAGCACTATCTGGTGCAGCAGCAGGACCCTCTTCA
GTGCCAGCAATCTCAAATGAATCAATTAACTTTTGTACGGTTTCTTGATC
TAAAATATGAAATGGCTCCCCAGCTCCTACCACAGCAACTGTGCAAATAG
AACTCTTTAGTGTTTCTCCTTGTAAGGTTTCCCTTATTGCCATGAGAGCG
TCCTTGATCAGATCTTCTCTTGTAGATTCTGAAAAGTTCTCAAACCTGCG
TTCCAAGTATGTCTTTGCAGCTTGAGATCGGGACCCAATGGCAAATGCTT
GATACTCAAAATAGTTCCCACTTGGGCAGTTATAATAAAGGTGGGCTCCT
TTTTCATCCAAGCCAGCAACCAGCAGGCCAACACCATATGGCCGTTTCC
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