CN188554

Overview
NameCN188554
Unique NameCN188554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9880 contig Csv1_Contig9880:590..1338. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA5_HUMAN (Proteasome subunit alpha type-5 OS=Homo sapiens GN=PSMA5 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.547e-11
Identity = 36/107 (33.64%), Postives = 66/107 (61.68%), Query Frame = -3 
Query:  424 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 744
            RP+GV LL  G+DEKG  L++  PSG + +  A AIGS S+ A++ L+  +      T ++ IK +L+ +++ ++ E L ++   +A V  G+ FH+  +E ++++I
Sbjct:  135 RPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYH--KSMTLKEAIKSSLIILKQVME-EKLNATNIELATVQPGQNFHMFTKEELEEVI 238
[Close]
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA5_BOVIN (Proteasome subunit alpha type-5 OS=Bos taurus GN=PSMA5 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.547e-11
Identity = 36/107 (33.64%), Postives = 66/107 (61.68%), Query Frame = -3 
Query:  424 RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 744
            RP+GV LL  G+DEKG  L++  PSG + +  A AIGS S+ A++ L+  +      T ++ IK +L+ +++ ++ E L ++   +A V  G+ FH+  +E ++++I
Sbjct:  135 RPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYH--KSMTLKEAIKSSLIILKQVME-EKLNATNIELATVQPGQNFHMFTKEELEEVI 238
The following BLAST results are available for this feature:
BLAST of CN188554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
PSA5_HUMAN5.547e-1133.64Proteasome subunit alpha type-5 OS=Homo sapiens GN... [more]
PSA5_BOVIN5.547e-1133.64Proteasome subunit alpha type-5 OS=Bos taurus GN=P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006E17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188554 ID=CN188554; Name=CN188554; organism=Citrus sinensis; type=EST; length=749bp
CTTTTACGAATNAACTAATACACAAGACAAAATGTCATTTTCGGGTTCCC
CTTTTGTATCTAAAGTGTTAAAGCAAGATGTTTGGAGTTCCCTAAAGGAT
ACTATTAAAATGTTTGTACTGATAAGGCAAGATAATTTGCACCATAAGCG
GAAAAATAAATTGTCCAACAGAATGATTTCCCGAAGTGCAACCCATATTC
CGTGGAACCCATCAAACACATGCTTAAACTCCTCATCTAAAGACGAAGAC
GAAGAAGCTGACTTCTGGTCCTTGCATCCTCAAATGTCCATTGGAGCTAC
ACCCTCGCCTGCTGGAGCACCTTGTTCTGAAGCTGCGCCTCCTTCTGCAG
CACTGCCTCCTTCTGCAGCACTATCTGGTGCAGCAGCAGGACCCTCTTCA
GTGCCAGCAATCTCAAATGAATCAATTAACTTTTGTACGGTTTCTTGATC
TAAAATATGAAATGGCTCCCCAGCTCCTACCACAGCAACTGTGCAAATAG
AACTCTTTAGTGTTTCTCCTTGTAAGGTTTCCCTTATTGCCATGAGAGCG
TCCTTGATCAGATCTTCTCTTGTAGATTCTGAAAAGTTCTCAAACCTGCG
TTCCAAGTATGTCTTTGCAGCTTGAGATCGGGACCCAATGGCAAATGCTT
GATACTCAAAATAGTTCCCACTTGGGCAGTTATAATAAAGGTGGGCTCCT
TTTTCATCCAAGCCAGCAACCAGCAGGCCAACACCATATGGCCGTTTCC
back to top