CN188428

Overview
NameCN188428
Unique NameCN188428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDHC_BOVIN (Malate dehydrogenase, cytoplasmic OS=Bos taurus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 3.885e-44
Identity = 92/154 (59.74%), Postives = 105/154 (68.18%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLI 460
            P   N L   + APSIP + F+ LTRLDHNRA  QI+ KL V   DVKNVIIWGNHSS+QYPDVNHA V     E  V E +KDD+WL GEFITTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMG+ SDG SY +P  L+
Sbjct:  132 PANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGIPDDLL 285          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDHC_XENTR (Malate dehydrogenase, cytoplasmic OS=Xenopus tropicalis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 5.073e-44
Identity = 92/154 (59.74%), Postives = 106/154 (68.83%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLI 460
            P   N L   + APSIP + F+ LTRLDHNRA GQI+ KLNV   DVKNVIIWGNHSS+QYPD +HATVN    +    E VK+D WL GEFITTVQQRGAA+IKARK           CDH+RD   GTP+G +VSMGV SDG SY +P  L+
Sbjct:  132 PANTNCLTAMKSAPSIPKENFSCLTRLDHNRAKGQIALKLNVASDDVKNVIIWGNHSSTQYPDASHATVNLQGKDVGAFEAVKNDDWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPDGQFVSMGVISDGNSYGIPEDLM 285          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDHC_MOUSE (Malate dehydrogenase, cytoplasmic OS=Mus musculus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 1.130e-43
Identity = 94/154 (61.04%), Postives = 104/154 (67.53%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLI 460
            P   N L   + APSIP + F+ LTRLDHNRA  QI+ KL V   DVKNVIIWGNHSS+QYPDVNHA V     E  V E +KDD+WL GEFITTVQQRGAA+IKARK            DHIRD   GTPEG +VSMGV SDG SY VP  L+
Sbjct:  132 PANTNCLTASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTADDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAIADHIRDIWFGTPEGEFVSMGVISDGNSYGVPDDLL 285          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDHC_RAT (Malate dehydrogenase, cytoplasmic OS=Rattus norvegicus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 1.476e-43
Identity = 94/154 (61.04%), Postives = 104/154 (67.53%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLI 460
            P   N L   + APSIP + F+ LTRLDHNRA  QI+ KL V   DVKNVIIWGNHSS+QYPDVNHA V     E  V E +KDD+WL GEFITTVQQRGAA+IKARK            DHIRD   GTPEG +VSMGV SDG SY VP  L+
Sbjct:  132 PANTNCLTASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTADDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAISDHIRDIWFGTPEGEFVSMGVISDGNSYGVPDDLL 285          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDHC_FELCA (Malate dehydrogenase, cytoplasmic OS=Felis catus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 1.632e-42
Identity = 90/154 (58.44%), Postives = 105/154 (68.18%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLI 460
            P   N L   + APSIP + F+ LTRLDHNRA  QI+ KL V   DVKNVIIWGNHSS+QYPDV+HA V     E  V + +KDD+WL GEFITTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMG+ SDG+ Y VP  L+
Sbjct:  132 PANTNCLTACKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVSHAKVKLHGKEVGVYDALKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNPYGVPDDLL 285          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDHC_DICDI (Probable malate dehydrogenase 3 OS=Dictyostelium discoideum GN=mdhC PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.132e-42
Identity = 86/153 (56.21%), Postives = 101/153 (66.01%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI +  A  IP + FT LTRLD NRA  QI+ K  V V DV NVIIWGNHSS+QYPD     +N + G+ P+   +KD+ WL GEFI+TVQ+RGAA+I ARK            DH+ DWVLGT EG +VSMGVYSDGSY VP GLI
Sbjct:  133 PANTNALIAQVSANGIPKENFTCLTRLDQNRAKSQIALKAGVNVKDVHNVIIWGNHSSTQYPDYRCGYINLSTGKTPISTAIKDEKWLQGEFISTVQKRGAAVIAARKLSSAASAAKAITDHMHDWVLGTAEGEYVSMGVYSDGSYGVPEGLI 285          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDHC_XENLA (Malate dehydrogenase, cytoplasmic OS=Xenopus laevis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.058e-41
Identity = 90/154 (58.44%), Postives = 103/154 (66.88%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLI 460
            P   N L   + APSIP + F+ LTRLDHNRA  QI+ KLNV   DVKNVIIWGNHSS+QYPD +HA+V     +    E VK+D WL G FITTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMGV SDG SY VP  L+
Sbjct:  132 PANTNCLTALKSAPSIPKENFSCLTRLDHNRAKAQIALKLNVASDDVKNVIIWGNHSSTQYPDASHASVTLQGKDVGAFEAVKNDDWLKGGFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGQFVSMGVISDGNSYGVPEDLM 285          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_THEFY (Malate dehydrogenase OS=Thermobifida fusca (strain YX) GN=mdh PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.293e-39
Identity = 83/153 (54.25%), Postives = 100/153 (65.36%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI +  AP IPA  FT++TRLDHNRAL Q++ KLNV VSD+K + IWGNHS++QYPD+ HA VN   G   V E V D+ WL   FI TV +RGAAII+AR             DH+ DWV GTPEG W S+ + SDGSY VP GL+
Sbjct:  133 PANTNALIAQAHAPDIPADRFTAMTRLDHNRALSQLAAKLNVSVSDIKKLTIWGNHSATQYPDIFHAEVN---GRSAV-EAVNDEEWLRDTFIPTVAKRGAAIIEARGASSAASAANAAIDHVYDWVNGTPEGDWTSVALPSDGSYGVPEGLV 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_NOCFA (Malate dehydrogenase OS=Nocardia farcinica GN=mdh PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.867e-38
Identity = 80/153 (52.29%), Postives = 100/153 (65.36%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I    AP +PA+ FT++TRLDHNRA+ Q+++K     +++  + +WGNHS++QYPD+ HATV   AG +P RELV D+ WL  +FI TVQQRG AII+AR             DHI DWVLGTP G W SM V SDGSY VP GLI
Sbjct:  137 PANTNAFIAMSNAPDVPAERFTAMTRLDHNRAIAQLAKKTGAPATEIHRIAVWGNHSATQYPDLTHATV---AG-RPARELV-DEQWLREDFIPTVQQRGTAIIQARGASSAASAASAAIDHIHDWVLGTPAGEWTSMAVPSDGSYGVPDGLI 284          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_DEIRA (Malate dehydrogenase OS=Deinococcus radiodurans GN=mdh PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.439e-38
Identity = 80/153 (52.29%), Postives = 99/153 (64.71%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI ++ AP +  K FT++ RLDHNRAL Q++EK    VSD+KNV IWGNHSS+QYPD++ ATVN     KP  E V D  W   ++I TV +RGAAII+AR             DH+ DW LGT +G WVSMG+ SDGSY +P GLI
Sbjct:  134 PANTNALIAQQNAPDLDPKCFTAMVRLDHNRALSQLAEKTGAAVSDIKNVTIWGNHSSTQYPDLSQATVN----GKPALEQV-DRTWYENDYIPTVAKRGAAIIEARGASSAASAASAAIDHMHDWALGTKDGEWVSMGIPSDGSYGIPEGLI 281          
The following BLAST results are available for this feature:
BLAST of CN188428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDHC_BOVIN3.885e-4459.74Malate dehydrogenase, cytoplasmic OS=Bos taurus GN... [more]
MDHC_XENTR5.073e-4459.74Malate dehydrogenase, cytoplasmic OS=Xenopus tropi... [more]
MDHC_MOUSE1.130e-4361.04Malate dehydrogenase, cytoplasmic OS=Mus musculus ... [more]
MDHC_RAT1.476e-4361.04Malate dehydrogenase, cytoplasmic OS=Rattus norveg... [more]
MDHC_FELCA1.632e-4258.44Malate dehydrogenase, cytoplasmic OS=Felis catus G... [more]
MDHC_DICDI2.132e-4256.21Probable malate dehydrogenase 3 OS=Dictyostelium d... [more]
MDHC_XENLA1.058e-4158.44Malate dehydrogenase, cytoplasmic OS=Xenopus laevi... [more]
MDH_THEFY1.293e-3954.25Malate dehydrogenase OS=Thermobifida fusca (strain... [more]
MDH_NOCFA1.867e-3852.29Malate dehydrogenase OS=Nocardia farcinica GN=mdh ... [more]
MDH_DEIRA2.439e-3852.29Malate dehydrogenase OS=Deinococcus radiodurans GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188428 ID=CN188428; Name=CN188428; organism=Citrus sinensis; type=EST; length=461bp
CCCTGNNATTATNAATGNATTGATTCTGAAAGAATTTGCGCCATCAATCC
CTGCTAAGATCTTCACAAGCTTGACCAGATTGGATCATAACAGGGCATTG
GGACAAATATCTGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGT
GATTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATGTCAACCATG
CAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGCTTGTCAAG
GATGATGCATGGTTGAATGGAGAATTCATAACCACAGTCCAACAACGTGG
TGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTA
GCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGC
ACTTGGGTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGC
TGGGCTCATTT
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