CN188428

Overview
NameCN188428
Unique NameCN188428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_CHLFF (Malate dehydrogenase OS=Chlamydophila felis (strain Fe/C-56) GN=mdh PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.817e-17
Identity = 51/154 (33.12%), Postives = 75/154 (48.70%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSD-GSYNVPAGLI 460
            P   N  I    AP +  + F S+ RLD NR    ++ +  V + +V NV+IWGNHS+ Q PD   + ++     KP  E++ D  WL    + ++Q RG+A+I+AR             +  R  +    EG W S GV SD   Y +P  LI
Sbjct:  134 PVNTNCWIAMSRAPKLNRRNFHSMLRLDQNRMQAMLAHRAQVPLDEVTNVVIWGNHSAKQVPDFTQSLIS----GKPAVEVISDRDWLENIMLPSIQNRGSAVIEARGKSSAGSAARALAEAARS-IFVPKEGEWFSTGVCSDYNPYGIPEDLI 282          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_CHLMU (Malate dehydrogenase OS=Chlamydia muridarum GN=mdh PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.178e-16
Identity = 50/154 (32.47%), Postives = 75/154 (48.70%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLI 460
            P   N  I    AP +  K F ++ RLD NR    ++ +  V +S V  V++WGNHS+ Q PD   A ++     +P+ E + D  WL    + +VQ RG+A+I+AR             +  R  +    EG W S GV SD + Y +P  +I
Sbjct:  133 PVNTNCWIAMNHAPRLLRKNFHAMLRLDQNRMHSMLAHRAEVPLSAVSQVVVWGNHSAKQVPDFTQALIH----GRPIVETIADRDWLENIMVPSVQSRGSAVIEARGKSSAASAARALAEAARS-IYQPKEGEWFSSGVCSDNNPYGLPEDII 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_CHLCV (Malate dehydrogenase OS=Chlamydophila caviae GN=mdh PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.178e-16
Identity = 51/154 (33.12%), Postives = 74/154 (48.05%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSD-GSYNVPAGLI 460
            P   N  I    AP +  + F S+ RLD NR    ++ +  V + +V NV++WGNHS+ Q PD   A ++     KP  E++ D  WL      ++Q RG+A+I+AR             +  R   L   +G W S GV SD   Y +P  LI
Sbjct:  136 PVNTNCWIAMNKAPKLNRRNFHSMLRLDQNRMHTMLAHRAEVPLDEVTNVVVWGNHSAKQVPDFTQALIS----GKPAVEVISDRDWLENIMFPSIQNRGSAVIEARGKSSAGSAARALAEAARSIFL-PKDGEWFSSGVCSDYNPYGIPDDLI 284          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_CHLAB (Malate dehydrogenase OS=Chlamydophila abortus GN=mdh PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.624e-16
Identity = 51/154 (33.12%), Postives = 75/154 (48.70%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSD-GSYNVPAGLI 460
            P   N  I    AP +  + F S+ RLD NR    ++ +  V + +V +V+IWGNHS+ Q PD   A ++     KP  E++ D  WL    + ++Q RG+A+I+AR             +  R   L   +G W S GV SD   Y +P  LI
Sbjct:  136 PVNTNCWIAMSQAPRLNRRNFHSMLRLDQNRMHTMLAHRAEVPLDEVSHVVIWGNHSAKQVPDFTQALIS----GKPAVEVIGDRDWLENIMLPSIQNRGSAVIEARGKSSAASAARALAEAARSIFL-PKDGEWFSTGVCSDYNPYGIPEDLI 284          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_CHLPN (Malate dehydrogenase OS=Chlamydia pneumoniae GN=mdh PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.476e-16
Identity = 50/154 (32.47%), Postives = 73/154 (47.40%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSD-GSYNVPAGLI 460
            P   N  I  + AP +  K F ++ RLD NR    ++ +  V + +V  V+IWGNHS+ Q PD   A ++     KP  E++ D  WL    + +VQ RG+A+I+AR             +  R  +       W S GV SD   Y +P  LI
Sbjct:  134 PVNTNCWIAMKHAPRLHRKNFHAMLRLDQNRMHSMLAHRAEVPLEEVSRVVIWGNHSAKQVPDFTQARIS----GKPAAEVIGDRDWLENILVHSVQNRGSAVIEARGKSSAASASRALAEAARS-IFCPKSDEWFSSGVCSDHNPYGIPEDLI 282          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH1B_BRAFL (Putative malate dehydrogenase 1B OS=Branchiostoma floridae GN=MDH1B PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.948e-15
Identity = 46/154 (29.87%), Postives = 76/154 (49.35%), Query Frame = 2
Query:   23 ILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAG--------EKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            IL +  PSIP +   ++ ++   +A   ++++L V  + V +VI+WGN   + Y DV+ A V+   G           V E+V D+ WL GEF+  +Q R   I  + +              +  W  G+PEG   S+ V S+G YN+P G++
Sbjct:  266 ILIDHTPSIPRQNIAAVAQVKERQAKSLLAKRLTVNSAGVCDVIVWGNVGGTTYTDVSRARVHGYDGAIWGPPSYSCSVSEMVHDNKWLEGEFLEQLQSRSHTIQDSLQHSADLSMAAAISSTLSYWWNGSPEGQLFSLAVCSEGFYNIPEGVV 419          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH1B_DANRE (Putative malate dehydrogenase 1B OS=Danio rerio GN=mdh1b PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.490e-11
Identity = 45/154 (29.22%), Postives = 72/154 (46.75%), Query Frame = 2
Query:   23 ILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAG--------EKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            +L E APSI ++ F ++T      A  Q+++KL+V+ SD+ NVI+WGN S S + D+  A V    G         + V E++ D  WL  +F + + +  A I                   ++ W          S+GV S G + +PAGL+
Sbjct:  244 LLIENAPSIDSRNFVAMTTQLEYEARTQLAQKLSVKTSDITNVIVWGNISGSFHIDLQRAKVFRYDGAIRGPDGFSQHVMEMIYDWKWLKTDFRSLLHKHRATISSKTNKATAISTTNAILAILKAWNNAESPEEVFSLGVLSTGQFGIPAGLV 397          
The following BLAST results are available for this feature:
BLAST of CN188428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDH_CHLFF1.817e-1733.12Malate dehydrogenase OS=Chlamydophila felis (strai... [more]
MDH_CHLMU1.178e-1632.47Malate dehydrogenase OS=Chlamydia muridarum GN=mdh... [more]
MDH_CHLCV1.178e-1633.12Malate dehydrogenase OS=Chlamydophila caviae GN=md... [more]
MDH_CHLAB2.624e-1633.12Malate dehydrogenase OS=Chlamydophila abortus GN=m... [more]
MDH_CHLPN4.476e-1632.47Malate dehydrogenase OS=Chlamydia pneumoniae GN=md... [more]
MDH1B_BRAFL4.948e-1529.87Putative malate dehydrogenase 1B OS=Branchiostoma ... [more]
MDH1B_DANRE1.490e-1129.22Putative malate dehydrogenase 1B OS=Danio rerio GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188428 ID=CN188428; Name=CN188428; organism=Citrus sinensis; type=EST; length=461bp
CCCTGNNATTATNAATGNATTGATTCTGAAAGAATTTGCGCCATCAATCC
CTGCTAAGATCTTCACAAGCTTGACCAGATTGGATCATAACAGGGCATTG
GGACAAATATCTGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGT
GATTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATGTCAACCATG
CAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGCTTGTCAAG
GATGATGCATGGTTGAATGGAGAATTCATAACCACAGTCCAACAACGTGG
TGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTA
GCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGC
ACTTGGGTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGC
TGGGCTCATTT
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