CN188428

Overview
NameCN188428
Unique NameCN188428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_NITEC (Malate dehydrogenase OS=Nitrosomonas eutropha (strain C91) GN=mdh PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.025e-36
Identity = 71/153 (46.41%), Postives = 99/153 (64.71%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI  + AP +PA+ F+ + RLDHNRAL Q++ KLN  VS++K +I+WGNHSS+Q+PD+ HA +    G+  V  L+KD  W+   FI TVQ+RGA +I+AR             DH+R+W  GT +G W +MG+ SDGSY +P G+I
Sbjct:  132 PANTNTLITMKNAPDLPAENFSGMLRLDHNRALSQVAMKLNQPVSNIKKMIVWGNHSSTQFPDLYHAEI----GDTKVINLIKDPIWIENYFIPTVQKRGAVVIEARGLSSAASAANAIIDHLRNWFFGTADGDWTTMGILSDGSYEIPEGVI 280          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_MYCPA (Malate dehydrogenase OS=Mycobacterium paratuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.748e-36
Identity = 77/153 (50.33%), Postives = 96/153 (62.75%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    AP IP + F++LTRLDHNRA+ Q+++K   +V+D+K + IWGNHS++QYPD+ HA V      K   E+V D  W+  +FI TV +RGAAII AR             D  RDW+LGTP G WVSM V SDGSY VP GLI
Sbjct:  133 PANTNALIAMSNAPDIPRERFSALTRLDHNRAISQLAKKTGAKVTDIKKMTIWGNHSATQYPDIFHAEVK----GKNAAEVVGDQNWIENDFIPTVAKRGAAIIDARGASSAASAASATTDAARDWLLGTPAGDWVSMAVISDGSYGVPEGLI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_HALHL (Malate dehydrogenase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=mdh PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.283e-36
Identity = 74/153 (48.37%), Postives = 98/153 (64.05%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI +  AP +  + FT++TRLDHNRAL Q+S K+    ++++ + +WGNHS++QYPD++H T+      +P  + V + AW+   FI TVQQRGAAIIKAR             DH+RDW LGTPEG W SM V SDGSY + AGLI
Sbjct:  132 PANTNALITQRNAPDLDPRNFTAMTRLDHNRALAQLSNKVGCHSTEIRGLAVWGNHSATQYPDISHCTIQG----RPAADQV-EHAWVKDTFIPTVQQRGAAIIKARGASSAASAASAAIDHMRDWALGTPEGEWTSMAVPSDGSYGIEAGLI 279          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_CELJU (Malate dehydrogenase OS=Cellvibrio japonicus (strain Ueda107) GN=mdh PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.283e-36
Identity = 77/153 (50.33%), Postives = 95/153 (62.09%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI +  AP I  + FT++TRLDHNRAL Q++ K    ++++   +IWGNHSS+QYPD++    NT    KP   LV D AW   ++I TVQQRGAAII AR             +HIRDW LGTP   WVSMGVYSDGSY +  GLI
Sbjct:  132 PANTNALIAQRNAPDISPRQFTAMTRLDHNRALSQLATKTGTSINNITKALIWGNHSSTQYPDLH----NTLVDGKPALSLV-DQAWYESDYIPTVQQRGAAIIAARGASSAASAANAAINHIRDWALGTPANDWVSMGVYSDGSYGIEKGLI 279          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_MYCTU (Malate dehydrogenase OS=Mycobacterium tuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.894e-36
Identity = 80/153 (52.29%), Postives = 96/153 (62.75%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    AP IP + F++LTRLDHNRA+ Q++ K    V+D+K + IWGNHS++QYPD+ HA V   AG K   E+V D AW+  EFI TV +RGAAII AR             D  RDW+LGTP   WVSM V SDGSY VP GLI
Sbjct:  133 PANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDLFHAEV---AG-KNAAEVVNDQAWIEDEFIPTVAKRGAAIIDARGASSAASAASATIDAARDWLLGTPADDWVSMAVVSDGSYGVPEGLI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_MYCTA (Malate dehydrogenase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=mdh PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.894e-36
Identity = 80/153 (52.29%), Postives = 96/153 (62.75%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    AP IP + F++LTRLDHNRA+ Q++ K    V+D+K + IWGNHS++QYPD+ HA V   AG K   E+V D AW+  EFI TV +RGAAII AR             D  RDW+LGTP   WVSM V SDGSY VP GLI
Sbjct:  133 PANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDLFHAEV---AG-KNAAEVVNDQAWIEDEFIPTVAKRGAAIIDARGASSAASAASATIDAARDWLLGTPADDWVSMAVVSDGSYGVPEGLI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_MYCBT (Malate dehydrogenase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=mdh PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.894e-36
Identity = 80/153 (52.29%), Postives = 96/153 (62.75%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    AP IP + F++LTRLDHNRA+ Q++ K    V+D+K + IWGNHS++QYPD+ HA V   AG K   E+V D AW+  EFI TV +RGAAII AR             D  RDW+LGTP   WVSM V SDGSY VP GLI
Sbjct:  133 PANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDLFHAEV---AG-KNAAEVVNDQAWIEDEFIPTVAKRGAAIIDARGASSAASAASATIDAARDWLLGTPADDWVSMAVVSDGSYGVPEGLI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_MYCBP (Malate dehydrogenase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=mdh PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.894e-36
Identity = 80/153 (52.29%), Postives = 96/153 (62.75%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    AP IP + F++LTRLDHNRA+ Q++ K    V+D+K + IWGNHS++QYPD+ HA V   AG K   E+V D AW+  EFI TV +RGAAII AR             D  RDW+LGTP   WVSM V SDGSY VP GLI
Sbjct:  133 PANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDLFHAEV---AG-KNAAEVVNDQAWIEDEFIPTVAKRGAAIIDARGASSAASAASATIDAARDWLLGTPADDWVSMAVVSDGSYGVPEGLI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_MYCBO (Malate dehydrogenase OS=Mycobacterium bovis GN=mdh PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.894e-36
Identity = 80/153 (52.29%), Postives = 96/153 (62.75%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    AP IP + F++LTRLDHNRA+ Q++ K    V+D+K + IWGNHS++QYPD+ HA V   AG K   E+V D AW+  EFI TV +RGAAII AR             D  RDW+LGTP   WVSM V SDGSY VP GLI
Sbjct:  133 PANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDLFHAEV---AG-KNAAEVVNDQAWIEDEFIPTVAKRGAAIIDARGASSAASAASATIDAARDWLLGTPADDWVSMAVVSDGSYGVPEGLI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_SACD2 (Malate dehydrogenase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=mdh PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 6.641e-36
Identity = 77/153 (50.33%), Postives = 96/153 (62.75%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI +  AP I  + FT++ RLDHNR L Q++ KL+V + D+  + IWGNHS++QYPD+ H  V    G+  V ++ KD  W   +FI TVQQRGAAIIKAR              H+RDW LGTPE  WVSMGVYSDGSY +  GLI
Sbjct:  132 PANTNALIAQRNAPDINPRQFTAMMRLDHNRGLSQLAAKLDVTLEDITKMTIWGNHSATQYPDLFHTLVK---GDVAVEQVEKD--WYENDFIPTVQQRGAAIIKARGASSAASAANAAIFHMRDWALGTPENDWVSMGVYSDGSYGIEEGLI 279          
The following BLAST results are available for this feature:
BLAST of CN188428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDH_NITEC1.025e-3646.41Malate dehydrogenase OS=Nitrosomonas eutropha (str... [more]
MDH_MYCPA1.748e-3650.33Malate dehydrogenase OS=Mycobacterium paratubercul... [more]
MDH_HALHL2.283e-3648.37Malate dehydrogenase OS=Halorhodospira halophila (... [more]
MDH_CELJU2.283e-3650.33Malate dehydrogenase OS=Cellvibrio japonicus (stra... [more]
MDH_MYCTU3.894e-3652.29Malate dehydrogenase OS=Mycobacterium tuberculosis... [more]
MDH_MYCTA3.894e-3652.29Malate dehydrogenase OS=Mycobacterium tuberculosis... [more]
MDH_MYCBT3.894e-3652.29Malate dehydrogenase OS=Mycobacterium bovis (strai... [more]
MDH_MYCBP3.894e-3652.29Malate dehydrogenase OS=Mycobacterium bovis (strai... [more]
MDH_MYCBO3.894e-3652.29Malate dehydrogenase OS=Mycobacterium bovis GN=mdh... [more]
MDH_SACD26.641e-3650.33Malate dehydrogenase OS=Saccharophagus degradans (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188428 ID=CN188428; Name=CN188428; organism=Citrus sinensis; type=EST; length=461bp
CCCTGNNATTATNAATGNATTGATTCTGAAAGAATTTGCGCCATCAATCC
CTGCTAAGATCTTCACAAGCTTGACCAGATTGGATCATAACAGGGCATTG
GGACAAATATCTGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGT
GATTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATGTCAACCATG
CAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGCTTGTCAAG
GATGATGCATGGTTGAATGGAGAATTCATAACCACAGTCCAACAACGTGG
TGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTA
GCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGC
ACTTGGGTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGC
TGGGCTCATTT
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