CN188428

Overview
NameCN188428
Unique NameCN188428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:554..1014. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDHA_DICDI (Probable malate dehydrogenase 1 OS=Dictyostelium discoideum GN=mdhA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.305e-35
Identity = 77/156 (49.36%), Postives = 91/156 (58.33%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGE---KPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N L     A  +P   F++LTRLD NRA   ISEK+   V +V NVIIWGNHS +Q PDVNH  +         +P+   V DD WLN +FI  VQ RGA +I ARK             H+RDW+LGT +G  VSM VYSDGSYNVP GLI
Sbjct:  189 PANTNALTALMKASDLPTSNFSALTRLDQNRAQSMISEKVGTNVDNVHNVIIWGNHSQTQVPDVNHGYILNYPNRGLIEPIPSSVNDDKWLNEQFIPLVQNRGATVIAARKLSSAASAANAIVGHVRDWLLGTKDGEHVSMAVYSDGSYNVPKGLI 344          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_MYCMM (Malate dehydrogenase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=mdh PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.343e-35
Identity = 77/153 (50.33%), Postives = 93/153 (60.78%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    AP IP + F++LTRLDHNRA+ Q++ K  V V+D+K + IWGNHS++QYPD+ HA V      K   E+V D AW+   FI TV +RGAAII AR             D  R W+LGTP   WVSM V SDGSY VP GLI
Sbjct:  133 PANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGVAVTDIKKMTIWGNHSATQYPDLFHAEVK----GKNAAEVVNDQAWIEEYFIPTVAKRGAAIIDARGASSAASAASATVDAARSWLLGTPADDWVSMAVLSDGSYGVPEGLI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_FRASC (Malate dehydrogenase OS=Frankia sp. (strain CcI3) GN=mdh PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 9.590e-35
Identity = 73/153 (47.71%), Postives = 94/153 (61.44%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI +  AP +PA+ FT++TRLDHNRA+ Q+++KL V  +++K + IWGNHS++QYPD+ HA V   +G     E V D AW+  EFI  V +RGA II+ R             DHI  WV GTP G W S  + SDGSY VP GLI
Sbjct:  133 PANTNALIAQTHAPDVPAERFTAMTRLDHNRAIAQLAKKLGVPSAEIKKITIWGNHSATQYPDIFHAEVGGRSG----AEAVGDQAWIADEFIPRVAKRGAEIIEVRGASSAASAASAAIDHIFTWVNGTPAGDWTSAAIPSDGSYGVPEGLI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_AKKM8 (Malate dehydrogenase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=mdh PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 9.590e-35
Identity = 76/153 (49.67%), Postives = 94/153 (61.44%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    A  +P+  F ++TRLD NRA  Q++EK  V V++V N+ IWGNHSS+QYPD  +A +    G KPV E++KD  WL G+FITTVQQRGAAIIKAR             D +R     TPEG W S+ V SDGSY +  GLI
Sbjct:  132 PCNTNALIAMHNASGVPSDRFFAMTRLDENRAKSQLAEKAGVHVTEVTNMAIWGNHSSTQYPDFTNARI----GGKPVTEVIKDTEWLKGDFITTVQQRGAAIIKARGASSAASAASAAVDTVRSLATQTPEGDWYSVAVCSDGSYGIEKGLI 280          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_BORPD (Malate dehydrogenase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=mdh PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.636e-34
Identity = 72/153 (47.06%), Postives = 97/153 (63.40%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +PAK FT++ RLDHNRAL Q++ K    V+D++ +++WGNHS + YPD   ATV    G + + +L+ DDAW    FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MG+ SDGSY +P G+I
Sbjct:  135 PANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLAAKSGKAVADIEKLVVWGNHSPTMYPDYRFATV----GGQSLAKLINDDAWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGII 282          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_MYCUA (Malate dehydrogenase OS=Mycobacterium ulcerans (strain Agy99) GN=mdh PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.136e-34
Identity = 76/153 (49.67%), Postives = 92/153 (60.13%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    AP IP + F++LTRLDHNRA+ Q++ K  V V+D+K + IWGNHS++QYPD+ HA V      K   E+V D AW+   FI TV +RGA II AR             D  R W+LGTP   WVSM V SDGSY VP GLI
Sbjct:  133 PANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGVAVTDIKKMTIWGNHSATQYPDLFHAEVK----GKNAAEVVNDQAWIEEYFIPTVAKRGATIIDARGASSAASAASASVDAARSWLLGTPADDWVSMAVLSDGSYGVPEGLI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_FRAAA (Malate dehydrogenase OS=Frankia alni (strain ACN14a) GN=mdh PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.136e-34
Identity = 71/153 (46.41%), Postives = 94/153 (61.44%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI +  AP +PA+ FT++TRLDHNRA+ Q+++KL V  ++++ + IWGNHS++QYPD+ HA V   +G     E V D  W+  EFI  V +RGA II+ R             DH+  WV GTPEG W S  + SDGSY VP GLI
Sbjct:  133 PANTNALIAQTHAPDVPAERFTAMTRLDHNRAIAQLAKKLGVPSAEIRKITIWGNHSATQYPDIFHAQVGGRSG----AEAVGDQKWIAEEFIPRVAKRGAEIIEVRGASSAASAASAAIDHVYTWVNGTPEGDWTSAAIPSDGSYGVPEGLI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_PSYA2 (Malate dehydrogenase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.790e-34
Identity = 77/153 (50.33%), Postives = 96/153 (62.75%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI +  AP +  + FT++TRLDHNRA+ Q++ K +  V+DVK +IIWGNHSS+QYPD+  +TVN     K   +LV D  W  G +I  VQQRGAAIIKAR              H+R WVLGT E  WVSMGVYS+G Y +  GLI
Sbjct:  134 PANTNALIAQRNAPDLDPRNFTAMTRLDHNRAMAQLAGKTDSTVNDVKKMIIWGNHSSTQYPDLTASTVN----GKLALDLV-DRTWYEGTYIPEVQQRGAAIIKARGASSAASAANAAIAHMRTWVLGTDENDWVSMGVYSNGEYGIAKGLI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_PSYWF (Malate dehydrogenase OS=Psychrobacter sp. (strain PRwf-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.060e-33
Identity = 74/153 (48.37%), Postives = 93/153 (60.78%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI +  AP +  + FT++TRLDHNR + Q++E+ N  V+DVK +IIWGNHSS+QYPD+   TVN     KP  E V  D W    +I +VQ+RGAAII+AR              H+R W LGT E  WVSMGVYS G Y +  GLI
Sbjct:  132 PANTNALIAQRNAPDLDPRNFTAMTRLDHNRGMAQLAEETNSTVNDVKKMIIWGNHSSTQYPDLTECTVN----GKPALEQVDRD-WYENSYIPSVQKRGAAIIEARGASSAASAANAAIAHMRTWALGTDENDWVSMGVYSQGEYGIAKGLI 279          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_NOCSJ (Malate dehydrogenase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=mdh PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.060e-33
Identity = 73/153 (47.71%), Postives = 92/153 (60.13%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    AP IP   F++LTRLDHNRA+ Q++ K    V+D+K + IWGNHS++QYPDV HA +    G +   E+V D  W+   FI TV +RGAAII+AR             D  RDW+ G+ +  WVSM V SDGSY VP GLI
Sbjct:  132 PANTNALIAMTNAPDIPQARFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDVFHAEI----GGRNAAEVVGDQDWIESTFIPTVAKRGAAIIEARGSSSAASAASATIDAARDWLFGSADADWVSMAVVSDGSYGVPEGLI 280          
The following BLAST results are available for this feature:
BLAST of CN188428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDHA_DICDI4.305e-3549.36Probable malate dehydrogenase 1 OS=Dictyostelium d... [more]
MDH_MYCMM7.343e-3550.33Malate dehydrogenase OS=Mycobacterium marinum (str... [more]
MDH_FRASC9.590e-3547.71Malate dehydrogenase OS=Frankia sp. (strain CcI3) ... [more]
MDH_AKKM89.590e-3549.67Malate dehydrogenase OS=Akkermansia muciniphila (s... [more]
MDH_BORPD1.636e-3447.06Malate dehydrogenase OS=Bordetella petrii (strain ... [more]
MDH_MYCUA2.136e-3449.67Malate dehydrogenase OS=Mycobacterium ulcerans (st... [more]
MDH_FRAAA2.136e-3446.41Malate dehydrogenase OS=Frankia alni (strain ACN14... [more]
MDH_PSYA22.790e-3450.33Malate dehydrogenase OS=Psychrobacter arcticus (st... [more]
MDH_PSYWF1.060e-3348.37Malate dehydrogenase OS=Psychrobacter sp. (strain ... [more]
MDH_NOCSJ1.060e-3347.71Malate dehydrogenase OS=Nocardioides sp. (strain B... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188428 ID=CN188428; Name=CN188428; organism=Citrus sinensis; type=EST; length=461bp
CCCTGNNATTATNAATGNATTGATTCTGAAAGAATTTGCGCCATCAATCC
CTGCTAAGATCTTCACAAGCTTGACCAGATTGGATCATAACAGGGCATTG
GGACAAATATCTGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGT
GATTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATGTCAACCATG
CAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGCTTGTCAAG
GATGATGCATGGTTGAATGGAGAATTCATAACCACAGTCCAACAACGTGG
TGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTA
GCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGC
ACTTGGGTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGC
TGGGCTCATTT
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