CN188428

Overview
NameCN188428
Unique NameCN188428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:554..1014. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_BORA1 (Malate dehydrogenase OS=Bordetella avium (strain 197N) GN=mdh PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.385e-33
Identity = 71/153 (46.41%), Postives = 97/153 (63.40%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +PAK FT++ RLDHNRAL Q++ K    V+ ++ +I+WGNHS + YPD   ATV+     +P+ +L+ D+AW    FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MG+ SDGSY +P G+I
Sbjct:  135 PANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLAGKSGKAVAGIEKLIVWGNHSPTMYPDYRFATVD----GQPLAKLINDEAWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGII 282          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_POLNS (Malate dehydrogenase OS=Polynucleobacter necessarius (strain STIR1) GN=mdh PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.809e-33
Identity = 72/153 (47.06%), Postives = 96/153 (62.75%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP IPAK FT++ RLDHNRAL Q++ KLN  V+D++ +++WGNHS + YPD   AT++     K V++ + D AW    FI TV +RGAAII+AR             DHI DWVLGT  G WV+MG+ S G Y++PA +I
Sbjct:  135 PANTNAYIAMKSAPDIPAKNFTAMLRLDHNRALSQLANKLNKPVADIEKLVVWGNHSPTMYPDYRFATID----GKSVKDSINDAAWNKDVFIPTVGKRGAAIIEARGLSSAASAANAAIDHIHDWVLGT-NGKWVTMGIPSKGEYDIPAEVI 282          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_POLSQ (Malate dehydrogenase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.362e-33
Identity = 72/153 (47.06%), Postives = 95/153 (62.09%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP IPAK FT++ RLDHNRAL Q++ KLN  V+D++ +++WGNHS + YPD   AT++     K V++ + D AW    FI TV +RGAAII+AR             DHI DWVLGT  G WV+MG+ S G Y +PA +I
Sbjct:  135 PANTNAYIAMKSAPDIPAKNFTAMLRLDHNRALSQLANKLNKPVADIEKLVVWGNHSPTMYPDYRFATID----GKSVKDSINDAAWNKDVFIPTVGKRGAAIIEARGLSSAASAANAAIDHIHDWVLGT-NGKWVTMGIPSKGEYGIPAEVI 282          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_CORJK (Malate dehydrogenase OS=Corynebacterium jeikeium (strain K411) GN=mdh PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.362e-33
Identity = 73/153 (47.71%), Postives = 95/153 (62.09%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I+   A  +  +  T+LTRLDHNR L Q+++KL V V D+KN+ +WGNHS+SQ+PDV   T+N   GEK   +L  D AW+N EFI  V +RGA II+ R             DH+RDWV GT EG WVS+ + SDGSY +P GL+
Sbjct:  135 PANTNAAIVAAHAEGLDPRRVTALTRLDHNRGLAQVADKLGVAVRDLKNMTVWGNHSASQFPDVAELTLN---GEKVADKL--DAAWVNDEFIPRVAKRGAEIIEVRGRSSAASAASAALDHMRDWVNGTAEGDWVSVALPSDGSYGIPEGLV 282          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_NITMU (Malate dehydrogenase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=mdh PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 6.873e-33
Identity = 70/153 (45.75%), Postives = 95/153 (62.09%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + APS+    F+S+ RLDHNRA+ Q++ K+   VS V+ +I+WGNHSS+QYPD++HA V+         +LV D AW+   FI  +Q+RG  +I+AR              H+RDWV GTPEG WVSMG+ SDGSY +P G+I
Sbjct:  132 PANTNAYITMKNAPSLKPTSFSSMMRLDHNRAVFQLAVKVGQPVSSVRKMIVWGNHSSAQYPDLSHAEVD----GHNAADLVNDMAWIETGFIPVIQKRGMEVIEARGSSSAASAANAAICHMRDWVSGTPEGDWVSMGIPSDGSYGIPEGVI 280          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_AQUAR (Malate dehydrogenase OS=Aquaspirillum arcticum GN=mdh PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 1.172e-32
Identity = 70/153 (45.75%), Postives = 94/153 (61.44%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + APS+PAK FT++ RLDHNRAL QI+ K    VS ++ + +WGNHS + Y D  +A ++ A+    V++++ DDAW    F+ TV +RGAAII AR             DHI DWVLGT  G W +MG+ SDGSY +P G+I
Sbjct:  135 PANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGAS----VKDMINDDAWNRDTFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGT-AGKWTTMGIPSDGSYGIPEGVI 282          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_PROAC (Malate dehydrogenase OS=Propionibacterium acnes GN=mdh PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.531e-32
Identity = 76/153 (49.67%), Postives = 94/153 (61.44%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N LI    A  IP   F +LTRLDHNRA  Q++ K    V+DV+++ IWGNHSS+QYPDV HA V   AG+K     + ++AW+  EFI TV +RGAAII AR             + +RDW+  TPEG WVSM + SDGSY VP GLI
Sbjct:  132 PANTNALIAATNAVDIPNNHFAALTRLDHNRAKTQLARKTGKTVNDVRHMTIWGNHSSTQYPDVFHAEV---AGQKATN--LVNEAWIENEFIPTVAKRGAAIIDARGASSAASAANATVECMRDWMGSTPEGDWVSMAIPSDGSYGVPEGLI 279          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_XYLFM (Malate dehydrogenase OS=Xylella fastidiosa (strain M12) GN=mdh PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.612e-32
Identity = 70/153 (45.75%), Postives = 94/153 (61.44%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +  K FT++ RLDHNRAL Q+S KL+  V++++ +I+WGNHS + YPD   AT    A   P+ E + D AW    FI TV +RGAAII+AR             DH+RDW+LG+  G W++MGV SDGSY +P G+I
Sbjct:  134 PANTNAYIAMKSAPDLNPKHFTAMLRLDHNRALSQLSTKLSKPVANIEKLIVWGNHSPTMYPDYRFAT----ADGTPIIEAINDQAWNANSFIPTVSKRGAAIIEARGLSSAASAANAAIDHMRDWLLGS-NGKWITMGVPSDGSYGIPEGMI 281          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_JANMA (Malate dehydrogenase OS=Janthinobacterium sp. (strain Marseille) GN=mdh PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.612e-32
Identity = 70/153 (45.75%), Postives = 93/153 (60.78%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP++PAK FT++ RLDHNRAL QI+ K++  V+ ++ + +WGNHS + YPD   AT    A  K V+E + D+ W    F+ TV +RGAAII AR             DH+RDWVLGT  G WV+MG+ SDGSY +P   I
Sbjct:  135 PANTNAYIAMKSAPNLPAKNFTAMLRLDHNRALSQIAAKISKPVTSIEKLTVWGNHSPTMYPDYRFAT----ADGKSVKEAINDEVWNKDVFLPTVGKRGAAIIDARGVSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPKDTI 282          
BLAST of CN188428 vs. ExPASy Swiss-Prot
Match: MDH_XYLFT (Malate dehydrogenase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=mdh PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.411e-32
Identity = 70/153 (45.75%), Postives = 93/153 (60.78%), Query Frame = 2
Query:    2 PXIXNXLILKEFAPSIPAKIFTSLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLI 460
            P   N  I  + AP +  K FT++ RLDHNRAL Q+S KL   V++++ +I+WGNHS + YPD   AT    A   P+ E + D AW    FI TV +RGAAII+AR             DH+RDW+LG+  G W++MGV SDGSY +P G+I
Sbjct:  134 PANTNAYIAMKSAPDLNPKHFTAMLRLDHNRALSQLSTKLGKPVANIEKLIVWGNHSPTMYPDYRFAT----ADGTPIIEAINDQAWNANSFIPTVSKRGAAIIEARGLSSAASAANAAIDHMRDWLLGS-NGKWITMGVPSDGSYGIPEGMI 281          
The following BLAST results are available for this feature:
BLAST of CN188428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDH_BORA11.385e-3346.41Malate dehydrogenase OS=Bordetella avium (strain 1... [more]
MDH_POLNS1.809e-3347.06Malate dehydrogenase OS=Polynucleobacter necessari... [more]
MDH_POLSQ2.362e-3347.06Malate dehydrogenase OS=Polynucleobacter sp. (stra... [more]
MDH_CORJK2.362e-3347.71Malate dehydrogenase OS=Corynebacterium jeikeium (... [more]
MDH_NITMU6.873e-3345.75Malate dehydrogenase OS=Nitrosospira multiformis (... [more]
MDH_AQUAR1.172e-3245.75Malate dehydrogenase OS=Aquaspirillum arcticum GN=... [more]
MDH_PROAC1.531e-3249.67Malate dehydrogenase OS=Propionibacterium acnes GN... [more]
MDH_XYLFM2.612e-3245.75Malate dehydrogenase OS=Xylella fastidiosa (strain... [more]
MDH_JANMA2.612e-3245.75Malate dehydrogenase OS=Janthinobacterium sp. (str... [more]
MDH_XYLFT3.411e-3245.75Malate dehydrogenase OS=Xylella fastidiosa (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188428 ID=CN188428; Name=CN188428; organism=Citrus sinensis; type=EST; length=461bp
CCCTGNNATTATNAATGNATTGATTCTGAAAGAATTTGCGCCATCAATCC
CTGCTAAGATCTTCACAAGCTTGACCAGATTGGATCATAACAGGGCATTG
GGACAAATATCTGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGT
GATTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATGTCAACCATG
CAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGCTTGTCAAG
GATGATGCATGGTTGAATGGAGAATTCATAACCACAGTCCAACAACGTGG
TGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTA
GCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGC
ACTTGGGTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGC
TGGGCTCATTT
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