EY666016

Overview
NameEY666016
Unique NameEY666016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666016 vs. ExPASy Swiss-Prot
Match: PILB_PSEAE (Type 4 fimbrial assembly protein pilB OS=Pseudomonas aeruginosa GN=pilB PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.424e-16
Identity = 49/146 (33.56%), Postives = 78/146 (53.42%), Query Frame = 2
Query:    2 LHTNDAPGAISRLQELGIPHYLINATLLGVMAQRLVRLLCPHCKRPNG-------------------QVYQAVGCGDCRESGYRGRAGIYEIMLMNDRLKALVTPGTDLQVLRHAALDQGMCSLRSAGTRKVMAGLTTLEEVLRVT 382
            LHTN A   ++RL  +G+P + +  ++  ++AQRL R LC HCK+ +                    ++Y  VGC  C+ +GY+GR GIYE++     L+ ++    +   +   A  +G   LR++G  K M G+T+LEEV RVT
Sbjct:  420 LHTNSAAETLTRLLNMGVPAFNLATSVNLIIAQRLARKLCSHCKKEHEVPRETLLHEGFPEDKIGTFKLYSPVGCDHCK-NGYKGRVGIYEVVKNTPALQRIIMEEGNSIEIAEQARKEGFNDLRTSGLLKAMQGITSLEEVNRVT 564          
BLAST of EY666016 vs. ExPASy Swiss-Prot
Match: GSPE_XANCP (General secretion pathway protein E OS=Xanthomonas campestris pv. campestris GN=xpsE PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 5.065e-14
Identity = 50/146 (34.25%), Postives = 76/146 (52.05%), Query Frame = 2
Query:    2 LHTNDAPGAISRLQELGIPHYLINATLLGVMAQRLVRLL-CPHCKR-----------------PNGQVY-QAVGCGDCRESGYRGRAGIYEIMLMNDRLKALVTPGTDLQVLRHAALDQGMCSLRSAGTRKVMAGLTTLEEVLRVT 382
            LHTN+A G I+RL ++G+  YL+ +T+ G++AQRLVR L   + +R                 P+G+++           +GY GR  I E ++MND L+  V     +  +   A   GM ++   G  K + G TT+EEVLRVT
Sbjct:  419 LHTNNAAGGITRLLDMGVEDYLLTSTINGILAQRLVRKLDLANAERYAASPEEIERFDLRRLQPDGEIFLYRPRATAAAPTGYLGRTTIVEFLVMNDELRRAVMRRAGMGEIEQLARKSGMRTMYEDGLSKALRGETTIEEVLRVT 564          
BLAST of EY666016 vs. ExPASy Swiss-Prot
Match: HOFB_HAEIN (Protein transport protein hofB homolog OS=Haemophilus influenzae GN=hofB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.630e-12
Identity = 52/128 (40.62%), Postives = 67/128 (52.34%), Query Frame = 2
Query:    2 LHTNDAPGAISRLQELGIPHYLINATLLGVMAQRLVRLLCPHCKRPNGQVYQAVGCGDCRESGYRGRAGIYEIM--LMNDRLKALVTPGTDLQVLRHAALDQGMCSLRSAGTRKVMAGLTTLEEVLRV 379
            LHTNDA  AISRLQ+LGI  Y I  +LL V+AQRLVR LC  C    G +  +  C      GYRGR G+Y+ +    ND         TD +            +LR++G  KV  G+T  +E+ RV
Sbjct:  358 LHTNDAISAISRLQQLGIQQYEIKNSLLLVIAQRLVRKLCSKC---GGNLANSCDC----HQGYRGRIGVYQFLHWQQNDY-------QTDFK------------NLRASGLEKVSQGITDEKEIERV 459          
The following BLAST results are available for this feature:
BLAST of EY666016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PILB_PSEAE1.424e-1633.56Type 4 fimbrial assembly protein pilB OS=Pseudomon... [more]
GSPE_XANCP5.065e-1434.25General secretion pathway protein E OS=Xanthomonas... [more]
HOFB_HAEIN3.630e-1240.63Protein transport protein hofB homolog OS=Haemophi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-011-G09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666016 ID=EY666016; Name=EY666016; organism=Citrus sinensis; type=EST; length=855bp
ACTCCACACCAACGACGCACCCGGCGCCATCAGCCGCCTGCAGGAACTGG
GTATTCCCCATTACCTGATCAATGCGACGTTGCTGGGGGTGATGGCCCAG
CGCCTGGTGCGGCTGTTGTGCCCGCACTGCAAGCGACCCAACGGGCAGGT
CTATCAGGCAGTGGGTTGCGGGGACTGTAGGGAAAGTGGTTACCGAGGGC
GAGCCGGGATCTACGAGATCATGCTGATGAACGACCGCCTCAAGGCGCTG
GTCACCCCGGGCACCGACCTTCAGGTCCTGCGTCACGCGGCCCTTGACCA
AGGAATGTGCAGCTTGCGGTCTGCCGGTACGCGCAAGGTAATGGCAGGGC
TGACGACCCTGGAAGAAGTACTGCGAGTGACGCCTGGGGATTCAGAAACA
AATCCCTTTGATTGATGGGCCGGTAAACCGTCCTTATCCCTGACAACACC
GTTACAATCGGTTAAACCTCGCGTTACCGCCAACACCAGATAGGGAATCG
TTATGCAGATCGGAACCGTACTGCTTCTTTTCGTAGGCTTGGCCGTCGCC
ATCCTCTTCATGGGTTTCAAAGTGGTCCCCCAGGGTTACCAGTGGACGGT
CGAGCGCTTCGGCCGCTACACAACACCCTCAAGCCGGGCCTCAACATCAT
TATTCCGGTCATGGACCGCATCCGTCCCAAAATCAACGTGATGGAAAGCG
TGGTGCATTTCCACCCCAGAAAGTCTCACCGGCCAAATGCCCAGGTTGAA
AATCGACACCGAGTGCTTCTTCCCCGAGGTAATGCGCGCCAGTCGGCAAC
CGAGGGAAACAAGTTGAGCCTCCATCCGAGACCTGTGCATAACAACTCCT
GTACG
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