CN188190

Overview
NameCN188190
Unique NameCN188190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2646 contig Csv1_Contig2646:1..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_TRYCO (V-type proton ATPase subunit B OS=Trypanosoma congolense PE=2 SV=1)

HSP 1 Score: 388.652 bits (997), Expect = 1.882e-107
Identity = 193/246 (78.46%), Postives = 215/246 (87.40%), Query Frame = 1
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS DMLGR+FNGSG PID+GPP+L E Y DI G  INP  R YPEEMIQTGIS+IDVM SI+RGQKIPLFS AGLPHNEIAAQI RQAGLV++         +G++++F IVFAAMGVN ETA+FF+ +FEENGSME+  LF+NLANDPTIERI+TPR+ALTTAEYLAY+CGKHVLVILTDMSSYADALREVSAAREEVPGRRG+PGYMYTDLA IYERAGR+ GR GSITQIPILTMPNDDITHP
Sbjct:  103 VSEDMLGRVFNGSGIPIDDGPPVLAEQYRDIQGIPINPRARVYPEEMIQTGISSIDVMTSISRGQKIPLFSGAGLPHNEIAAQIVRQAGLVRK---------EGKQEDFCIVFAAMGVNQETARFFRTEFEENGSMEKTVLFMNLANDPTIERIVTPRLALTTAEYLAYDCGKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLACIYERAGRVLGRAGSITQIPILTMPNDDITHP 339          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_PYRHO (V-type ATP synthase beta chain OS=Pyrococcus horikoshii GN=atpB PE=3 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 4.808e-95
Identity = 169/250 (67.60%), Postives = 202/250 (80.80%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K PVS+DMLGRIFNG GKPID GP I+PE   D+ G+ +NP  R YP + IQTGIS ID MN++ RGQK+P+FS +GLPHN++AAQI RQA ++            GEE++FA+VFAAMG+  E A FFK+ FEE G++ER  LFLNLA+DP IERIITPR+ALT AEYLA++   HVLVILTDM++Y +ALRE+SAAREEVPGRRGYPGYMYTDLA IYERAGRI GRKGSITQ+PILTMP+DDITHP
Sbjct:   80 LKVPVSMDMLGRIFNGIGKPIDGGPEIIPEDRRDVHGAPLNPVARAYPRDFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNQLAAQIARQAKVL------------GEEESFAVVFAAMGITYEEANFFKKSFEETGAIERAVLFLNLADDPAIERIITPRMALTVAEYLAFDYDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIRGRKGSITQMPILTMPDDDITHP 317          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_PYRFU (V-type ATP synthase beta chain OS=Pyrococcus furiosus GN=atpB PE=3 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 1.827e-94
Identity = 167/250 (66.80%), Postives = 202/250 (80.80%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K PVS+DMLGRIFNG GKPID GP I+PE   D+ G+ +NP  R YP + IQTGIS ID MN++ RGQK+P+FS +GLPHN++AAQI RQA ++            GEE++FA+VFAAMG+  E A FFK+ FEE G++ER  LFLNLA+DP IERIITPR+ALT AEYLA++   HVLVILTDM++Y +ALRE+SAAREEVPGRRGYPGYMYTDLA IYERAGR+ G+KGSITQ+PILTMP+DDITHP
Sbjct:   77 LKVPVSMDMLGRIFNGIGKPIDGGPEIIPEDRRDVHGAPLNPVARAYPRDFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNKLAAQIARQAKVL------------GEEESFAVVFAAMGITYEEANFFKKSFEETGAIERAVLFLNLADDPAIERIITPRMALTVAEYLAFDYDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVRGKKGSITQMPILTMPDDDITHP 314          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_PYRAB (V-type ATP synthase beta chain OS=Pyrococcus abyssi GN=atpB PE=3 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 9.067e-94
Identity = 167/250 (66.80%), Postives = 201/250 (80.40%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K PVS+DMLGRIFNG GKPID GP I+PE   D+ G+ +NP  R YP + IQTGIS ID MN++ RGQK+P+FS +GLPHN++AAQI RQA ++            GEE++FA+VFAAMG+  E A FFK+ FEE G++ER  LFLNLA+DP IERIITPR+ALT AEYLA++    VLVILTDM++Y +ALRE+SAAREEVPGRRGYPGYMYTDLA IYERAGRI G+KGSITQ+PILTMP+DDITHP
Sbjct:   80 LKVPVSMDMLGRIFNGIGKPIDGGPEIIPEDRRDVHGAPLNPVARAYPRDFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNQLAAQIARQAKVL------------GEEESFAVVFAAMGITYEEANFFKKSFEETGAIERAVLFLNLADDPAIERIITPRMALTVAEYLAFDYDMQVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIRGKKGSITQMPILTMPDDDITHP 317          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_THESI (V-type ATP synthase beta chain OS=Thermococcus sp. (strain KI) GN=atpB PE=3 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.547e-93
Identity = 167/250 (66.80%), Postives = 200/250 (80.00%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K PVS+DMLGRIFNG GKPID GP I+PE   D+ G+ +NP  R YP + IQTGIS ID MN++ RGQK+P+FS +GLPHN +AAQI RQA ++            GEE+ FA+VFAAMG+  E A FFK+ FEE G++ER  LFLNLA+DP IERIITPR+ALT AEYLA++    VLVILTDM++YA+ALRE+SAAREEVPGRRGYPGYMYTDLA IYERAGR+ G+KGSITQ+PILTMP+DDITHP
Sbjct:   78 LKVPVSMDMLGRIFNGIGKPIDGGPEIIPEDRRDVHGAPLNPVARAYPRDFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNMLAAQIARQAKVL------------GEEEQFAVVFAAMGITYEEANFFKKSFEETGAIERAVLFLNLADDPAIERIITPRMALTVAEYLAFDYDMQVLVILTDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVRGKKGSITQMPILTMPDDDITHP 315          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_THEGJ (V-type ATP synthase beta chain OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=atpB PE=3 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.547e-93
Identity = 167/250 (66.80%), Postives = 200/250 (80.00%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K PVS+DMLGRIFNG GKPID GP I+PE   D+ G+ +NP  R YP + IQTGIS ID MN++ RGQK+P+FS +GLPHN +AAQI RQA ++            GEE+ FA+VFAAMG+  E A FFK+ FEE G++ER  LFLNLA+DP IERIITPR+ALT AEYLA++    VLVILTDM++YA+ALRE+SAAREEVPGRRGYPGYMYTDLA IYERAGR+ G+KGSITQ+PILTMP+DDITHP
Sbjct:   78 LKVPVSMDMLGRIFNGIGKPIDGGPEIIPEDRRDVHGAPLNPVARAYPRDFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNMLAAQIARQAKVL------------GEEEQFAVVFAAMGITYEEANFFKKSFEETGAIERAVLFLNLADDPAIERIITPRMALTVAEYLAFDYDMQVLVILTDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVRGKKGSITQMPILTMPDDDITHP 315          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_PYRKO (V-type ATP synthase beta chain OS=Pyrococcus kodakaraensis GN=atpB PE=3 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.547e-93
Identity = 167/250 (66.80%), Postives = 200/250 (80.00%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K PVS+DMLGRIFNG GKPID GP I+PE   D+ G+ +NP  R YP + IQTGIS ID MN++ RGQK+P+FS +GLPHN +AAQI RQA ++            GEE+ FA+VFAAMG+  E A FFK+ FEE G++ER  LFLNLA+DP IERIITPR+ALT AEYLA++    VLVILTDM++YA+ALRE+SAAREEVPGRRGYPGYMYTDLA IYERAGR+ G+KGSITQ+PILTMP+DDITHP
Sbjct:   80 LKVPVSMDMLGRIFNGIGKPIDGGPEIIPEDRRDVHGAPLNPVARAYPRDFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNMLAAQIARQAKVL------------GEEEQFAVVFAAMGITYEEANFFKKSFEETGAIERAVLFLNLADDPAIERIITPRMALTVAEYLAFDYDMQVLVILTDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVRGKKGSITQMPILTMPDDDITHP 317          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_THEON (V-type ATP synthase beta chain OS=Thermococcus onnurineus (strain NA1) GN=atpB PE=3 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 2.638e-93
Identity = 165/250 (66.00%), Postives = 200/250 (80.00%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K PVS+DMLGR+FNG GKPID GP I+PE   D+ G+ +NP  R YP + IQTG+S ID MN++ RGQK+P+FS +GLPHN +AAQI RQA ++            GEE+ FA+VFAAMG+  E A FFK+ FEE G++ER  LFLNLA+DP IERIITPR+ALT AEYLA++    VLVILTDM++YA+ALRE+SAAREEVPGRRGYPGYMYTDLA IYERAGR+ G+KGSITQ+PILTMP+DDITHP
Sbjct:   80 LKVPVSMDMLGRVFNGIGKPIDGGPEIIPEDRRDVHGAPLNPVARAYPRDFIQTGVSAIDGMNTLVRGQKLPIFSGSGLPHNMLAAQIARQAKVL------------GEEEQFAVVFAAMGITYEEANFFKKSFEETGAIERAVLFLNLADDPAIERIITPRMALTVAEYLAFDYDMQVLVILTDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVRGKKGSITQMPILTMPDDDITHP 317          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_DESSY (V-type ATP synthase beta chain OS=Desulfurococcus sp. (strain SY) GN=atpB PE=3 SV=2)

HSP 1 Score: 340.887 bits (873), Expect = 4.500e-93
Identity = 166/250 (66.40%), Postives = 199/250 (79.60%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K PVS+DMLGRIFNG GKPID GP I+PE   D+ G+ +NP  R YP + IQTGIS ID MN++ RGQK+P+FS +GLPHN +AAQI RQA ++            GEE+ FA+VFAAMG+  E A FFK+ FEE G++ER  LFLNLA+DP IERIITPR+ALT AEYLA++    VLVILTDM++YA+ALRE+SAAREEVPGRRGYPGYMYTDLA IYER GR+ G+KGSITQ+PILTMP+DDITHP
Sbjct:   78 LKVPVSMDMLGRIFNGIGKPIDGGPEIIPEDRRDVHGAPLNPVARAYPRDFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNMLAAQIARQAKVL------------GEEEQFAVVFAAMGITYEEANFFKKSFEETGAIERAVLFLNLADDPAIERIITPRMALTVAEYLAFDYDMQVLVILTDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERGGRVRGKKGSITQMPILTMPDDDITHP 315          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_METTH (V-type ATP synthase beta chain OS=Methanobacterium thermoautotrophicum GN=atpB PE=3 SV=2)

HSP 1 Score: 339.732 bits (870), Expect = 1.002e-92
Identity = 165/249 (66.27%), Postives = 201/249 (80.72%), Query Frame = 1
Query:    7 KTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            K  VSLDM+GRIF+G+GKPID GP I+PE  LDI+GS +NP+ R +P E IQTGISTID MN++ RGQK+P+FS +GLPHNE+AAQI RQA ++             EE  FA++FAAMG+  E A +F RDFE  G++ERVT+F+NLA+DP IERIITPR+ALTTAEY A+E   HVLVILTD+++Y +ALRE+SAAREEVPGRRGYPGYMYTDLA +YERAGRI G++GSITQ+PIL MP DDITHP
Sbjct:   83 KIGVSLDMMGRIFDGTGKPIDGGPEIIPEKELDINGSPMNPAAREFPAEFIQTGISTIDGMNTLVRGQKLPIFSGSGLPHNELAAQIARQAKVL------------AEESEFAVIFAAMGITHEEANYFMRDFERTGALERVTVFMNLADDPAIERIITPRMALTTAEYFAFEHDMHVLVILTDLTNYCEALREISAAREEVPGRRGYPGYMYTDLASLYERAGRIVGKEGSITQMPILVMPQDDITHP 319          
The following BLAST results are available for this feature:
BLAST of CN188190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
VATB_TRYCO1.882e-10778.46V-type proton ATPase subunit B OS=Trypanosoma cong... [more]
VATB_PYRHO4.808e-9567.60V-type ATP synthase beta chain OS=Pyrococcus horik... [more]
VATB_PYRFU1.827e-9466.80V-type ATP synthase beta chain OS=Pyrococcus furio... [more]
VATB_PYRAB9.067e-9466.80V-type ATP synthase beta chain OS=Pyrococcus abyss... [more]
VATB_THESI1.547e-9366.80V-type ATP synthase beta chain OS=Thermococcus sp.... [more]
VATB_THEGJ1.547e-9366.80V-type ATP synthase beta chain OS=Thermococcus gam... [more]
VATB_PYRKO1.547e-9366.80V-type ATP synthase beta chain OS=Pyrococcus kodak... [more]
VATB_THEON2.638e-9366.00V-type ATP synthase beta chain OS=Thermococcus onn... [more]
VATB_DESSY4.500e-9366.40V-type ATP synthase beta chain OS=Desulfurococcus ... [more]
VATB_METTH1.002e-9266.27V-type ATP synthase beta chain OS=Methanobacterium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005K08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188190 ID=CN188190; Name=CN188190; organism=Citrus sinensis; type=EST; length=753bp
GAGGTGAAGACTCCTGTCTCATTGGATATGCTTGGGCGCATTTTTAATGG
TTCTGGGAAACCCATTGATAATGGTCCCCCAATTTTGCCAGAGGCTTACT
TGGATATATCCGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGAA
GAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAACTCCATTGC
TAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTCCCCATAATG
AAATTGCTGCTCAGATTTGTCGCCAGGCTGGTTTAGTCAAGCGATTGGAG
AAGACTGATAATCTTCTTGAGGATGGGGAAGAGGACAACTTTGCAATTGT
GTTTGCAGCTATGGGTGTAAATATGGAGACTGCACAGTTTTTCAAACGTG
ATTTTGAGGAAAATGGATCAATGGAGCGAGTGACTCTTTTTCTGAATCTG
GCTAACGACCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTAC
TACTGCAGAGTATCTGGCATATGAATGTGGGAAGCATGTTCTTGTCATAC
TGACGGACATGAGTTCTTATGCTGATGCTCTTCGTGAGGTGTCTGCTGCC
CGAGAGGAAGTGCCTGGAAGAAGAGGGTATCCTGGGTATATGTATACTGA
TTTGGCTCAAATTTATGAGCGTGCTGGACGAATTGAAGGTCGAAAAGGTT
CCATCACCCAAATTCCAATATTGACTATGCCAAATGACGATATTACACAT
CCC
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