CN188190

Overview
NameCN188190
Unique NameCN188190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2646 contig Csv1_Contig2646:1..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_HALMA (V-type ATP synthase beta chain OS=Haloarcula marismortui GN=atpB PE=3 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 1.147e-88
Identity = 158/253 (62.45%), Postives = 198/253 (78.26%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDN---FAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K PV+ D+LGR+ +G+G+PID GP I+P+   DI G +INP  R YPEE IQTG+S ID MN++ RGQK+P+FSA+GLPHN++A QI RQA + +         EDGE+D    FA++F AMG+  E A  F  DFE  G++ER  +F+NLA+DP +ER ITPR+ALTTAEYLA+E   HVLVILTDM++Y +ALRE+ AAREEVPGRRGYPGYMYTDLAQ+YERAGRIEGR+GS+TQ+PILTMP DD THP
Sbjct:   75 MKMPVTEDLLGRVMDGTGQPIDGGPEIVPDERRDIVGEAINPFSREYPEEFIQTGVSAIDGMNTLVRGQKLPIFSASGLPHNDLALQIARQATVPEE--------EDGEDDEGSEFAVIFGAMGITAEEANEFMDDFERTGALERSVVFMNLADDPAVERTITPRLALTTAEYLAFEKDYHVLVILTDMTNYCEALREIGAAREEVPGRRGYPGYMYTDLAQLYERAGRIEGREGSVTQLPILTMPGDDDTHP 319          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_HALVO (V-type ATP synthase beta chain OS=Halobacterium volcanii GN=atpB PE=1 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.498e-88
Identity = 157/250 (62.80%), Postives = 195/250 (78.00%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K PV+ D+LGR+ +GSG+PID GP I+P+   DI G++INP  R YPEE IQTG+S ID MN++ RGQK+P+FSA+GLPHN++A QI RQA + +  E        GEE  FA+VF AMG+  E A  F  DFE  G++ER  +F NLA+DP +ER +TPR+ALTTAEYLA++   HVLVILTDM++Y +ALRE+ AAREEVPGRRGYPGYMYTDLAQ+YERAGRI+GR GS+TQIPILTMP DD THP
Sbjct:   75 LKMPVTEDLLGRVLDGSGQPIDGGPEIVPDERRDIVGAAINPYSREYPEEFIQTGVSAIDGMNTLVRGQKLPIFSASGLPHNDLALQIARQATVPEDEES-------GEESEFAVVFGAMGITQEEANEFMEDFERTGALERSVVFTNLADDPAVERTVTPRLALTTAEYLAFDKDYHVLVILTDMTNYCEALREIGAAREEVPGRRGYPGYMYTDLAQLYERAGRIQGRDGSVTQIPILTMPGDDDTHP 317          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_METBF (V-type ATP synthase beta chain OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=atpB PE=3 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 4.358e-88
Identity = 155/250 (62.00%), Postives = 198/250 (79.20%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K P S+D+LGRI +GSG+P+D GP I+P+  LDI+G+++NP  R  P++ IQTGISTID  N++ RGQK+P+FSA+GLPHNEIA QI RQA +             G E  FA+VFAAMG+  E AQ+F  DFE+ G++ER  +FLNLA+DP +ERI+TPR+ALT AEYLAYE G HVLVILTD+++YA+ALR++ AAR E+PGRRGYPGYMYTDLA +YERAG ++G KGS+TQIPIL+MP DDITHP
Sbjct:   76 LKLPASIDLLGRILSGSGEPLDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQAAV------------PGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEIPGRRGYPGYMYTDLATLYERAGIVKGAKGSVTQIPILSMPGDDITHP 313          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_METBA (V-type ATP synthase beta chain OS=Methanosarcina barkeri GN=atpB PE=3 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 4.358e-88
Identity = 155/250 (62.00%), Postives = 198/250 (79.20%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K P S+D+LGRI +GSG+P+D GP I+P+  LDI+G+++NP  R  P++ IQTGISTID  N++ RGQK+P+FSA+GLPHNEIA QI RQA +             G E  FA+VFAAMG+  E AQ+F  DFE+ G++ER  +FLNLA+DP +ERI+TPR+ALT AEYLAYE G HVLVILTD+++YA+ALR++ AAR E+PGRRGYPGYMYTDLA +YERAG ++G KGS+TQIPIL+MP DDITHP
Sbjct:   76 LKLPASIDLLGRILSGSGEPLDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQAAV------------PGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEIPGRRGYPGYMYTDLATLYERAGIVKGAKGSVTQIPILSMPGDDITHP 313          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_HALSA (V-type ATP synthase beta chain OS=Halobacterium salinarium GN=atpB PE=1 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 5.692e-88
Identity = 155/250 (62.00%), Postives = 196/250 (78.40%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K PV+ D+LGR+ +GSG PID GP I+P+  +DI G +INP  R YPEE IQTG+S ID MN++ RGQK+P+FS +GLPH+++A QI RQA + +   +TD    D E   FA+VF AMG+  E A  F  DFE  G++ER  +F+NLA+DP +ER +TPR+ALTTAEYLA+E   HVLVILTDM++Y +ALR++ AAREEVPGRRGYPGYMYTDLAQ+YERAGRIEG++GS+TQIPILTMP DD THP
Sbjct:   75 LKMPVTEDLLGRVLDGSGNPIDGGPDIVPDDRVDIVGEAINPHAREYPEEFIQTGVSGIDGMNTLVRGQKLPIFSGSGLPHSDLALQIARQASVPEEEAETD----DDEGSEFAVVFGAMGITAEEANEFMDDFERTGALERSVVFMNLADDPAVERTVTPRMALTTAEYLAFEKDYHVLVILTDMTNYCEALRQIGAAREEVPGRRGYPGYMYTDLAQLYERAGRIEGKEGSVTQIPILTMPGDDDTHP 320          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_HALS3 (V-type ATP synthase beta chain OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=atpB PE=3 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 5.692e-88
Identity = 155/250 (62.00%), Postives = 196/250 (78.40%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K PV+ D+LGR+ +GSG PID GP I+P+  +DI G +INP  R YPEE IQTG+S ID MN++ RGQK+P+FS +GLPH+++A QI RQA + +   +TD    D E   FA+VF AMG+  E A  F  DFE  G++ER  +F+NLA+DP +ER +TPR+ALTTAEYLA+E   HVLVILTDM++Y +ALR++ AAREEVPGRRGYPGYMYTDLAQ+YERAGRIEG++GS+TQIPILTMP DD THP
Sbjct:   75 LKMPVTEDLLGRVLDGSGNPIDGGPDIVPDDRVDIVGEAINPHAREYPEEFIQTGVSGIDGMNTLVRGQKLPIFSGSGLPHSDLALQIARQASVPEEEAETD----DDEGSEFAVVFGAMGITAEEANEFMDDFERTGALERSVVFMNLADDPAVERTVTPRMALTTAEYLAFEKDYHVLVILTDMTNYCEALRQIGAAREEVPGRRGYPGYMYTDLAQLYERAGRIEGKEGSVTQIPILTMPGDDDTHP 320          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_STAMF (V-type ATP synthase beta chain OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=atpB PE=3 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 7.434e-88
Identity = 159/250 (63.60%), Postives = 195/250 (78.00%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K PVS+DMLGRIF+G G+PID GPPI+PE YLDI+GS INP+ R  P E I+TGIS ID +NSI RGQK+P+FS +GLPHN IAAQI RQA +             G+E+ FA+VFAA+GV+ + A FF  +F+  G++E    F+N A+ P IERI  PRIALT AE+LA++   HVL ILTDM++Y +ALRE+SAAREEVP RRGYPGYMYTDLA IYERAGR+EG+KGS+TQ+PILTMPNDDITHP
Sbjct:   83 LKLPVSIDMLGRIFDGLGRPIDGGPPIVPEDYLDINGSPINPASRLPPSEFIETGISAIDGLNSIVRGQKLPIFSGSGLPHNRIAAQIVRQARV------------RGKEEKFAVVFAAIGVSYDDAMFFIENFKNYGALENAVAFINTADSPVIERIAIPRIALTAAEFLAWKHDMHVLAILTDMTNYCEALRELSAAREEVPSRRGYPGYMYTDLATIYERAGRVEGKKGSVTQMPILTMPNDDITHP 320          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: NTPB_ENTHR (V-type sodium ATPase subunit B OS=Enterococcus hirae GN=ntpB PE=1 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 7.434e-88
Identity = 156/246 (63.41%), Postives = 193/246 (78.46%), Query Frame = 1
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS DM+GR+F+G G+P DNGP ILPE YLDI+G  INP  R YP+E IQTGIS ID +N++ RGQK+P+FS +GLPH E+AAQI RQA ++               D+FA+VFAA+G+  E A+FF  DF + G+++R  +F+NLANDP IERI TPR+ALT AEYLAYE G HVLVI+TDM++YA+ALRE+SAAR EVPGRRGYPGY+YT+LA ++ERAGRI G KGS+TQIPILTMP DD THP
Sbjct:   81 VSEDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLD------------SSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERAGRIRGLKGSVTQIPILTMPEDDKTHP 314          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_ARCFU (V-type ATP synthase beta chain OS=Archaeoglobus fulgidus GN=atpB PE=3 SV=2)

HSP 1 Score: 322.783 bits (826), Expect = 1.268e-87
Identity = 160/250 (64.00%), Postives = 192/250 (76.80%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VK   S DMLGRI +GSG+PID GP I+PE    I G++INP  R YP E IQTGIS ID MN++ RGQK+P+FS +GLPHN+IA QI RQA +             GE + FA++FAAMG+  E A  F ++FE  G++ER  +FLNLANDP IER++TPR+ALT AE+LAYE   H+LVILTDM++Y +ALRE+SAAREEVPGRRGYPGYMYTDLA IYERAGRI GRKG+ITQ+PILTMP DDITHP
Sbjct:   75 VKLNCSQDMLGRILSGSGEPIDGGPKIVPEERRPIVGAAINPYARQYPREFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNDIALQIARQAKV------------RGEGEEFAVIFAAMGITYEEAYQFMKEFERTGALERAVVFLNLANDPAIERLLTPRMALTAAEFLAYEYDLHILVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIRGRKGTITQMPILTMPGDDITHP 312          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_METMA (V-type ATP synthase beta chain OS=Methanosarcina mazei GN=atpB PE=1 SV=2)

HSP 1 Score: 322.398 bits (825), Expect = 1.656e-87
Identity = 156/250 (62.40%), Postives = 197/250 (78.80%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K P S+D+LGRI +GSG+P D GP I+P+  LDI+G+++NP  R  P++ IQTGISTID  N++ RGQK+P+FSA+GLPHNEIA QI RQA +             G E  FA+VFAAMG+  E AQ+F  DFE+ G++ER  +FLNLA+DP +ERI+TPR+ALT AEYLAYE G HVLVILTD+++YA+ALR++ AAR EVPGRRGYPGYMYTDLA +YERAG ++G KGS+TQIPIL+MP DDITHP
Sbjct:   76 LKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASV------------PGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGAKGSVTQIPILSMPGDDITHP 313          
The following BLAST results are available for this feature:
BLAST of CN188190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
VATB_HALMA1.147e-8862.45V-type ATP synthase beta chain OS=Haloarcula maris... [more]
VATB_HALVO1.498e-8862.80V-type ATP synthase beta chain OS=Halobacterium vo... [more]
VATB_METBF4.358e-8862.00V-type ATP synthase beta chain OS=Methanosarcina b... [more]
VATB_METBA4.358e-8862.00V-type ATP synthase beta chain OS=Methanosarcina b... [more]
VATB_HALSA5.692e-8862.00V-type ATP synthase beta chain OS=Halobacterium sa... [more]
VATB_HALS35.692e-8862.00V-type ATP synthase beta chain OS=Halobacterium sa... [more]
VATB_STAMF7.434e-8863.60V-type ATP synthase beta chain OS=Staphylothermus ... [more]
NTPB_ENTHR7.434e-8863.41V-type sodium ATPase subunit B OS=Enterococcus hir... [more]
VATB_ARCFU1.268e-8764.00V-type ATP synthase beta chain OS=Archaeoglobus fu... [more]
VATB_METMA1.656e-8762.40V-type ATP synthase beta chain OS=Methanosarcina m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005K08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188190 ID=CN188190; Name=CN188190; organism=Citrus sinensis; type=EST; length=753bp
GAGGTGAAGACTCCTGTCTCATTGGATATGCTTGGGCGCATTTTTAATGG
TTCTGGGAAACCCATTGATAATGGTCCCCCAATTTTGCCAGAGGCTTACT
TGGATATATCCGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGAA
GAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAACTCCATTGC
TAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTCCCCATAATG
AAATTGCTGCTCAGATTTGTCGCCAGGCTGGTTTAGTCAAGCGATTGGAG
AAGACTGATAATCTTCTTGAGGATGGGGAAGAGGACAACTTTGCAATTGT
GTTTGCAGCTATGGGTGTAAATATGGAGACTGCACAGTTTTTCAAACGTG
ATTTTGAGGAAAATGGATCAATGGAGCGAGTGACTCTTTTTCTGAATCTG
GCTAACGACCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTAC
TACTGCAGAGTATCTGGCATATGAATGTGGGAAGCATGTTCTTGTCATAC
TGACGGACATGAGTTCTTATGCTGATGCTCTTCGTGAGGTGTCTGCTGCC
CGAGAGGAAGTGCCTGGAAGAAGAGGGTATCCTGGGTATATGTATACTGA
TTTGGCTCAAATTTATGAGCGTGCTGGACGAATTGAAGGTCGAAAAGGTT
CCATCACCCAAATTCCAATATTGACTATGCCAAATGACGATATTACACAT
CCC
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